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PDGF-and VEGF-related factor 1, isoform B (PDGF/VEGF factor-1) (VEGF2-B ligand short isoform)

 Q9BLX1_DROME            Unreviewed;       314 AA.
Q9BLX1;
01-JUN-2001, integrated into UniProtKB/TrEMBL.
01-JUN-2001, sequence version 1.
05-DEC-2018, entry version 140.
SubName: Full=PDGF-and VEGF-related factor 1, isoform B {ECO:0000313|EMBL:ACZ95326.1};
SubName: Full=PDGF/VEGF factor-1 {ECO:0000313|EMBL:CAC24699.1};
SubName: Full=VEGF2-B ligand short isoform {ECO:0000313|EMBL:AAL91091.1};
Name=Pvf1 {ECO:0000313|EMBL:CAC24699.1,
ECO:0000313|FlyBase:FBgn0030964};
Synonyms=Dmel\CG7103 {ECO:0000313|EMBL:ACZ95326.1},
DmVEGF-1 {ECO:0000313|EMBL:ACZ95326.1},
EP1624 {ECO:0000313|EMBL:ACZ95326.1},
l(1)G0146 {ECO:0000313|EMBL:ACZ95326.1},
PVF {ECO:0000313|EMBL:ACZ95326.1}, Pvf {ECO:0000313|EMBL:ACZ95326.1},
Pvf-1 {ECO:0000313|EMBL:ACZ95326.1},
PVF1 {ECO:0000313|EMBL:ACZ95326.1},
pvf1 {ECO:0000313|EMBL:ACZ95326.1},
PVFs {ECO:0000313|EMBL:ACZ95326.1},
VEGF {ECO:0000313|EMBL:ACZ95326.1},
vegf1 {ECO:0000313|EMBL:ACZ95326.1},
Vegf17E {ECO:0000313|EMBL:ACZ95326.1},
Vegf17e-a {ECO:0000313|EMBL:ACZ95326.1},
Vegf17e-b {ECO:0000313|EMBL:AAL91091.1},
VEGF2-B {ECO:0000313|EMBL:ACZ95326.1};
ORFNames=CG7103 {ECO:0000313|EMBL:ACZ95326.1,
ECO:0000313|FlyBase:FBgn0030964},
Dmel_CG7103 {ECO:0000313|EMBL:ACZ95326.1};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:CAC24699.1};
[1] {ECO:0000313|EMBL:ACZ95326.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:CAC24699.1}
NUCLEOTIDE SEQUENCE.
PubMed=11677054; DOI=10.1016/S0925-4773(01)00510-X;
Heino T.I., Karpanen T., Wahlstrom G., Pulkkinen M., Eriksson U.,
Alitalo K., Roos C.;
"The Drosophila VEGF receptor homolog is expressed in hemocytes.";
Mech. Dev. 109:69-77(2001).
[3] {ECO:0000313|EMBL:AAL91091.1}
NUCLEOTIDE SEQUENCE.
PubMed=11955438; DOI=10.1016/S0092-8674(02)00676-1;
Cho N.K., Keyes L., Johnson E., Heller J., Ryner L., Karim F.,
Krasnow M.A.;
"Developmental control of blood cell migration by the Drosophila VEGF
pathway.";
Cell 108:865-876(2002).
[4] {ECO:0000313|EMBL:ACZ95326.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[5] {ECO:0000313|EMBL:ACZ95326.1, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[6] {ECO:0000313|EMBL:ACZ95326.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
[7] {ECO:0000313|EMBL:ACZ95326.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[8] {ECO:0000313|EMBL:ACZ95326.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[9] {ECO:0000313|EMBL:ACZ95326.1}
NUCLEOTIDE SEQUENCE.
Berkeley Drosophila Genome Project;
Celniker S., Carlson J., Wan K., Pfeiffer B., Frise E., George R.,
Hoskins R., Stapleton M., Pacleb J., Park S., Svirskas R., Smith E.,
Yu C., Rubin G.;
"Drosophila melanogaster release 4 sequence.";
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[10] {ECO:0000313|EMBL:ACZ95326.1}
NUCLEOTIDE SEQUENCE.
Celniker S., Carlson J., Wan K., Frise E., Hoskins R., Park S.,
Svirskas R., Rubin G.;
Submitted (AUG-2006) to the EMBL/GenBank/DDBJ databases.
[11] {ECO:0000313|EMBL:ACZ95326.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[12] {ECO:0000313|EMBL:ACZ95326.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
[13] {ECO:0000313|EMBL:ACZ95326.1}
NUCLEOTIDE SEQUENCE.
PubMed=26109357; DOI=.1534/g3.115.018929;
FlyBase Consortium;
Matthews B.B., Dos Santos G., Crosby M.A., Emmert D.B.,
St Pierre S.E., Gramates L.S., Zhou P., Schroeder A.J., Falls K.,
Strelets V., Russo S.M., Gelbart W.M.;
"Gene Model Annotations for Drosophila melanogaster: Impact of High-
Throughput Data.";
G3 (Bethesda) 5:1721-1736(2015).
[14] {ECO:0000313|EMBL:ACZ95326.1}
NUCLEOTIDE SEQUENCE.
PubMed=26109356; DOI=.1534/g3.115.018937;
FlyBase Consortium;
Crosby M.A., Gramates L.S., Dos Santos G., Matthews B.B.,
St Pierre S.E., Zhou P., Schroeder A.J., Falls K., Emmert D.B.,
Russo S.M., Gelbart W.M.;
"Gene Model Annotations for Drosophila melanogaster: The Rule-
Benders.";
G3 (Bethesda) 5:1737-1749(2015).
[15] {ECO:0000313|EMBL:ACZ95326.1}
NUCLEOTIDE SEQUENCE.
FlyBase;
Submitted (MAY-2018) to the EMBL/GenBank/DDBJ databases.
-!- SIMILARITY: Belongs to the PDGF/VEGF growth factor family.
{ECO:0000256|RuleBase:RU003818}.
-----------------------------------------------------------------------
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EMBL; AY079186; AAL91091.1; -; mRNA.
EMBL; AE014298; ACZ95326.1; -; Genomic_DNA.
EMBL; AJ401391; CAC24699.1; -; mRNA.
RefSeq; NP_001162792.1; NM_001169321.2.
UniGene; Dm.4697; -.
EnsemblMetazoa; FBtr0301667; FBpp0290881; FBgn0030964.
GeneID; 32876; -.
KEGG; dme:Dmel_CG7103; -.
CTD; 32876; -.
FlyBase; FBgn0030964; Pvf1.
eggNOG; ENOG410IZ3Q; Eukaryota.
eggNOG; ENOG4111RWK; LUCA.
GeneTree; ENSGT00940000176407; -.
OMA; ANCTCAC; -.
OrthoDB; EOG091G0ZSH; -.
GenomeRNAi; 32876; -.
Proteomes; UP000000803; Chromosome X.
Bgee; FBgn0030964; Expressed in 35 organ(s), highest expression level in spermathecum.
GO; GO:0005615; C:extracellular space; IBA:GO_Central.
GO; GO:0016020; C:membrane; IEA:InterPro.
GO; GO:0008083; F:growth factor activity; IEA:UniProtKB-KW.
GO; GO:0008201; F:heparin binding; IDA:FlyBase.
GO; GO:0005172; F:vascular endothelial growth factor receptor binding; ISS:FlyBase.
GO; GO:0061327; P:anterior Malpighian tubule development; IMP:FlyBase.
GO; GO:0030031; P:cell projection assembly; IMP:FlyBase.
GO; GO:0035099; P:hemocyte migration; IGI:FlyBase.
GO; GO:0007443; P:Malpighian tubule morphogenesis; IMP:FlyBase.
GO; GO:0060548; P:negative regulation of cell death; IMP:FlyBase.
GO; GO:1903688; P:positive regulation of border follicle cell migration; IMP:FlyBase.
GO; GO:0008284; P:positive regulation of cell proliferation; IBA:GO_Central.
GO; GO:0031954; P:positive regulation of protein autophosphorylation; IBA:GO_Central.
GO; GO:2000683; P:regulation of cellular response to X-ray; IMP:FlyBase.
GO; GO:0048010; P:vascular endothelial growth factor receptor signaling pathway; ISS:FlyBase.
CDD; cd00135; PDGF; 1.
Gene3D; 2.10.90.10; -; 1.
InterPro; IPR029034; Cystine-knot_cytokine.
InterPro; IPR000072; PDGF/VEGF_dom.
Pfam; PF00341; PDGF; 1.
SMART; SM00141; PDGF; 1.
SUPFAM; SSF57501; SSF57501; 1.
PROSITE; PS50278; PDGF_2; 1.
2: Evidence at transcript level;
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Growth factor {ECO:0000256|RuleBase:RU003818};
Reference proteome {ECO:0000313|Proteomes:UP000000803};
Signal {ECO:0000256|SAM:SignalP}.
SIGNAL 1 22 {ECO:0000256|SAM:SignalP}.
CHAIN 23 314 {ECO:0000256|SAM:SignalP}.
/FTId=PRO_5015099653.
DOMAIN 116 217 PDGF_2. {ECO:0000259|PROSITE:PS50278}.
SEQUENCE 314 AA; 34482 MW; DE7771E7B2BD5EDD CRC64;
MQHPLLILPV LLLVLIVSEA AAGSLVSPNN RQPSQRFFYA AATSSSSTQT KVRLLRQADD
PSAAPGALEG SCCQGAAAEA GTPLTLPLSV SAELTNVTAD YDVSGEMPSS KENFKRSIMK
STVRNATPAS CSPQPTIVEL KPPAEDEANY YYMPACTRIS RCNGCCGSTL ISCQPTEVEQ
VQLRVRKVDR AATSGRRPFT IITVEQHTQC RCDCRTKAED CNVYQSYRKD LCRCECHNTD
ARDKCLEQAE NKYWVDDNCT CVCRYNQSCT TGTVFDETQC KCTDPAAPID VLDRKRFIVQ
AVQVDPDNTT LYSV


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