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PDGF-and VEGF-related factor 1, isoform C

 X2JCH3_DROME            Unreviewed;       300 AA.
X2JCH3;
11-JUN-2014, integrated into UniProtKB/TrEMBL.
11-JUN-2014, sequence version 1.
12-SEP-2018, entry version 41.
SubName: Full=PDGF-and VEGF-related factor 1, isoform C {ECO:0000313|EMBL:AHN59885.1};
Name=Pvf1 {ECO:0000313|EMBL:AHN59885.1,
ECO:0000313|FlyBase:FBgn0030964};
Synonyms=CG7103 {ECO:0000313|EMBL:AHN59885.1},
Dmel\CG7103 {ECO:0000313|EMBL:AHN59885.1},
DmVEGF-1 {ECO:0000313|EMBL:AHN59885.1},
EP1624 {ECO:0000313|EMBL:AHN59885.1},
l(1)G0146 {ECO:0000313|EMBL:AHN59885.1},
PVF {ECO:0000313|EMBL:AHN59885.1}, Pvf {ECO:0000313|EMBL:AHN59885.1},
Pvf-1 {ECO:0000313|EMBL:AHN59885.1},
PVF1 {ECO:0000313|EMBL:AHN59885.1},
pvf1 {ECO:0000313|EMBL:AHN59885.1},
PVFs {ECO:0000313|EMBL:AHN59885.1},
VEGF {ECO:0000313|EMBL:AHN59885.1},
vegf1 {ECO:0000313|EMBL:AHN59885.1},
Vegf17E {ECO:0000313|EMBL:AHN59885.1},
Vegf17e-a {ECO:0000313|EMBL:AHN59885.1},
Vegf17e-b {ECO:0000313|EMBL:AHN59885.1},
VEGF2-B {ECO:0000313|EMBL:AHN59885.1};
ORFNames=CG7103 {ECO:0000313|FlyBase:FBgn0030964},
Dmel_CG7103 {ECO:0000313|EMBL:AHN59885.1};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AHN59885.1, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AHN59885.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AHN59885.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AHN59885.1, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AHN59885.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084-RESEARCH0084(2002).
[5] {ECO:0000313|EMBL:AHN59885.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:AHN59885.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[7] {ECO:0000313|EMBL:AHN59885.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[8] {ECO:0000313|EMBL:AHN59885.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
-!- SIMILARITY: Belongs to the PDGF/VEGF growth factor family.
{ECO:0000256|RuleBase:RU003818}.
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EMBL; AE014298; AHN59885.1; -; Genomic_DNA.
RefSeq; NP_001285415.1; NM_001298486.1.
UniGene; Dm.4697; -.
ProteinModelPortal; X2JCH3; -.
SMR; X2JCH3; -.
PRIDE; X2JCH3; -.
EnsemblMetazoa; FBtr0343604; FBpp0310199; FBgn0030964.
GeneID; 32876; -.
CTD; 32876; -.
FlyBase; FBgn0030964; Pvf1.
eggNOG; ENOG410IZ3Q; Eukaryota.
eggNOG; ENOG4111RWK; LUCA.
OrthoDB; EOG091G0ZSH; -.
GenomeRNAi; 32876; -.
Proteomes; UP000000803; Chromosome X.
Bgee; FBgn0030964; Expressed in 35 organ(s), highest expression level in spermathecum.
ExpressionAtlas; X2JCH3; baseline and differential.
GO; GO:0005737; C:cytoplasm; IDA:FlyBase.
GO; GO:0005576; C:extracellular region; ISS:FlyBase.
GO; GO:0016020; C:membrane; IEA:InterPro.
GO; GO:0008083; F:growth factor activity; IEA:UniProtKB-KW.
GO; GO:0008201; F:heparin binding; IDA:FlyBase.
GO; GO:0005102; F:signaling receptor binding; IPI:FlyBase.
GO; GO:0005172; F:vascular endothelial growth factor receptor binding; ISS:FlyBase.
GO; GO:0061327; P:anterior Malpighian tubule development; IMP:FlyBase.
GO; GO:0007298; P:border follicle cell migration; IMP:FlyBase.
GO; GO:0030031; P:cell projection assembly; IMP:FlyBase.
GO; GO:0035099; P:hemocyte migration; IGI:FlyBase.
GO; GO:0007443; P:Malpighian tubule morphogenesis; IMP:FlyBase.
GO; GO:0060548; P:negative regulation of cell death; IMP:FlyBase.
GO; GO:2000683; P:regulation of cellular response to X-ray; IMP:FlyBase.
GO; GO:0007435; P:salivary gland morphogenesis; IMP:FlyBase.
GO; GO:0048010; P:vascular endothelial growth factor receptor signaling pathway; ISS:FlyBase.
CDD; cd00135; PDGF; 1.
Gene3D; 2.10.90.10; -; 1.
InterPro; IPR029034; Cystine-knot_cytokine.
InterPro; IPR000072; PDGF/VEGF_dom.
Pfam; PF00341; PDGF; 1.
SMART; SM00141; PDGF; 1.
SUPFAM; SSF57501; SSF57501; 1.
PROSITE; PS50278; PDGF_2; 1.
3: Inferred from homology;
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Growth factor {ECO:0000256|RuleBase:RU003818};
Reference proteome {ECO:0000313|Proteomes:UP000000803};
Signal {ECO:0000256|SAM:SignalP}.
SIGNAL 1 33 {ECO:0000256|SAM:SignalP}.
CHAIN 34 300 {ECO:0000256|SAM:SignalP}.
/FTId=PRO_5004950271.
DOMAIN 127 228 PDGF_2. {ECO:0000259|PROSITE:PS50278}.
SEQUENCE 300 AA; 32942 MW; 1A5B4F632394CEC5 CRC64;
MAMSRIRILK PMQHPLLILP VLLLVLIVSE AAAGSLVSPN NRQPSQRFFY AAATSSSSTQ
TKVRLLRQAD DPSAAPGALE GSCCQGAAAE AGTPLTLPLS VSAELTNVTA DYDVSGEMPS
SKENFKRSIM KSTVRNATPA SCSPQPTIVE LKPPAEDEAN YYYMPACTRI SRCNGCCGST
LISCQPTEVE QVQLRVRKVD RAATSGRRPF TIITVEQHTQ CRCDCRTKAE DCNVYQSYRK
DLCRCECHNT DARDKCLEQA ENKYWVDDNC TCVCRYNQSC TTGTVFDETQ CKCTDVSGSR


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