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PKHD1, fibrocystin/polyductin

 A0A096NJ34_PAPAN        Unreviewed;      4072 AA.
A0A096NJ34;
26-NOV-2014, integrated into UniProtKB/TrEMBL.
28-FEB-2018, sequence version 2.
05-DEC-2018, entry version 29.
SubName: Full=PKHD1, fibrocystin/polyductin {ECO:0000313|Ensembl:ENSPANP00000012983};
Name=PKHD1 {ECO:0000313|Ensembl:ENSPANP00000012983};
Papio anubis (Olive baboon).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Cercopithecidae; Cercopithecinae; Papio.
NCBI_TaxID=9555 {ECO:0000313|Ensembl:ENSPANP00000012983, ECO:0000313|Proteomes:UP000028761};
[1] {ECO:0000313|Ensembl:ENSPANP00000012983, ECO:0000313|Proteomes:UP000028761}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Liu Y.L., Abraham K.A., Akbar H.A., Ali S.A., Anosike U.A.,
Aqrawi P.A., Arias F.A., Attaway T.A., Awwad R.A., Babu C.B.,
Bandaranaike D.B., Battles P.B., Bell A.B., Beltran B.B.,
Berhane-Mersha D.B., Bess C.B., Bickham C.B., Bolden T.B.,
Carter K.C., Chau D.C., Chavez A.C., Clerc-Blankenburg K.C.,
Coyle M.C., Dao M.D., Davila M.L.D., Davy-Carroll L.D., Denson S.D.,
Dinh H.D., Fernandez S.F., Fernando P.F., Forbes L.F., Francis C.F.,
Francisco L.F., Fu Q.F., Garcia-Iii R.G., Garrett T.G., Gross S.G.,
Gubbala S.G., Hirani K.H., Hogues M.H., Hollins B.H., Jackson L.J.,
Javaid M.J., Jhangiani S.J., Johnson A.J., Johnson B.J., Jones J.J.,
Joshi V.J., Kalu J.K., Khan N.K., Korchina V.K., Kovar C.K.,
Lago L.L., Lara F.L., Le T.-K.L., Lee S.L., Legall-Iii F.L.,
Lemon S.L., Liu J.L., Liu Y.-S.L., Liyanage D.L., Lopez J.L.,
Lorensuhewa L.L., Mata R.M., Mathew T.M., Mercado C.M., Mercado I.M.,
Morales K.M., Morgan M.M., Munidasa M.M., Ngo D.N., Nguyen L.N.,
Nguyen T.N., Nguyen N.N., Obregon M.O., Okwuonu G.O., Ongeri F.O.,
Onwere C.O., Osifeso I.O., Parra A.P., Patil S.P., Perez A.P.,
Perez Y.P., Pham C.P., Pu L.-L.P., Puazo M.P., Quiroz J.Q.,
Rouhana J.R., Ruiz M.R., Ruiz S.-J.R., Saada N.S., Santibanez J.S.,
Scheel M.S., Schneider B.S., Simmons D.S., Sisson I.S., Tang L.-Y.T.,
Thornton R.T., Tisius J.T., Toledanes G.T., Trejos Z.T., Usmani K.U.,
Varghese R.V., Vattathil S.V., Vee V.V., Walker D.W.,
Weissenberger G.W., White C.W., Williams A.W., Woodworth J.W.,
Wright R.W., Zhu Y.Z., Han Y.H., Newsham I.N., Nazareth L.N.,
Worley K.W., Muzny D.M., Rogers J.R., Gibbs R.G.;
"Whole Genome Assembly of Papio anubis.";
Submitted (MAR-2012) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|Ensembl:ENSPANP00000012983}
IDENTIFICATION.
Ensembl;
Submitted (OCT-2014) to the EMBL/GenBank/DDBJ databases.
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EMBL; AHZZ02024757; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AHZZ02024758; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AHZZ02024759; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AHZZ02024760; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AHZZ02024761; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AHZZ02024762; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AHZZ02024763; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AHZZ02024764; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AHZZ02024765; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AHZZ02024766; -; NOT_ANNOTATED_CDS; Genomic_DNA.
Ensembl; ENSPANT00000004865; ENSPANP00000012983; ENSPANG00000020811.
GeneTree; ENSGT00940000160697; -.
OrthoDB; EOG091G00JT; -.
Proteomes; UP000028761; Chromosome 4.
GO; GO:0016324; C:apical plasma membrane; IEA:Ensembl.
GO; GO:0005813; C:centrosome; IEA:Ensembl.
GO; GO:0036064; C:ciliary basal body; IEA:Ensembl.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0072686; C:mitotic spindle; IEA:Ensembl.
GO; GO:0048471; C:perinuclear region of cytoplasm; IEA:Ensembl.
GO; GO:0006874; P:cellular calcium ion homeostasis; IEA:Ensembl.
GO; GO:0060271; P:cilium assembly; IEA:Ensembl.
GO; GO:0001822; P:kidney development; IEA:Ensembl.
GO; GO:0043066; P:negative regulation of apoptotic process; IEA:Ensembl.
GO; GO:0032088; P:negative regulation of NF-kappaB transcription factor activity; IEA:Ensembl.
GO; GO:0051898; P:negative regulation of protein kinase B signaling; IEA:Ensembl.
GO; GO:0008284; P:positive regulation of cell proliferation; IEA:Ensembl.
GO; GO:0010824; P:regulation of centrosome duplication; IEA:Ensembl.
GO; GO:0070372; P:regulation of ERK1 and ERK2 cascade; IEA:Ensembl.
GO; GO:0032006; P:regulation of TOR signaling; IEA:Ensembl.
Gene3D; 2.160.20.10; -; 2.
Gene3D; 2.60.40.10; -; 5.
InterPro; IPR039448; Beta_helix.
InterPro; IPR019316; G8_domain.
InterPro; IPR013783; Ig-like_fold.
InterPro; IPR014756; Ig_E-set.
InterPro; IPR002909; IPT_dom.
InterPro; IPR037524; PA14/GLEYA.
InterPro; IPR006626; PbH1.
InterPro; IPR012334; Pectin_lyas_fold.
InterPro; IPR011050; Pectin_lyase_fold/virulence.
InterPro; IPR028839; PKHD1.
PANTHER; PTHR45107; PTHR45107; 1.
Pfam; PF13229; Beta_helix; 2.
Pfam; PF10162; G8; 2.
Pfam; PF01833; TIG; 8.
SMART; SM01225; G8; 2.
SMART; SM00429; IPT; 5.
SMART; SM00710; PbH1; 9.
SUPFAM; SSF51126; SSF51126; 2.
SUPFAM; SSF81296; SSF81296; 7.
PROSITE; PS51484; G8; 2.
PROSITE; PS51820; PA14; 1.
4: Predicted;
Complete proteome {ECO:0000313|Proteomes:UP000028761};
Membrane {ECO:0000256|SAM:Phobius};
Reference proteome {ECO:0000313|Proteomes:UP000028761};
Signal {ECO:0000256|SAM:SignalP};
Transmembrane {ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAM:Phobius}.
SIGNAL 1 17 {ECO:0000256|SAM:SignalP}.
CHAIN 18 4072 {ECO:0000256|SAM:SignalP}.
/FTId=PRO_5014123096.
TRANSMEM 3858 3881 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 322 485 PA14. {ECO:0000259|PROSITE:PS51820}.
DOMAIN 1932 2053 G8. {ECO:0000259|PROSITE:PS51484}.
DOMAIN 2747 2873 G8. {ECO:0000259|PROSITE:PS51484}.
SEQUENCE 4072 AA; 445840 MW; C3AA8478B24F795B CRC64;
MTAWLISLMG VEALLLAVPH LSLHIEPEEG SLAGGTWITV IFDGLESGVL YPNNGSQLEI
HLVNTNMVAP ALPSIPCDVF PVFLDLPVVM CRTRSLLSEA HEGLYSLEAY FGGQLVSSPS
PGPRDSCTFK FSKEQTPIVH QVYPPSGVPG KLIQVYGWIM TGRLETFDFD AEYIDSPVIL
EAQGDKWVTP CSLVNRQTGS CYPIQEDHGL GTLQCHVEGD YIGSQNVSFS VFNKGKSMVH
KKAWLISAKQ DLFLYQTHSE ILSVFPETGS LGGRTDITIT GDFFDNSARV TVAGIPCDIR
HVSPRKIECT TRAPGKDARL TTPQPGNRGL LFEVGDAVEG LELTEATPGY RWQIVPNASS
PFGFWSKEGQ PFRARLSGFF VAPETNNYTF WIQADSQASL HFSWSEEPRT KVKVASISVG
TADWFDSWEQ NRDEGTWQQK TPKLELLGGA KYYLEAEHHG IAPSRGMRIG VQIHNTWLNP
DVVTTYLREK HQIRARAQRL PEVQVLNVSG RGNFFLTWDN VSSQPIPANA TAHLIQTTIE
ELLAVKCKLE PLWANILLRL GFEGGLEVSN SDGDLTSGTE PFCGRFSLRQ PQHLVVTPPA
AQKGYRLDQY THLCLAYKGH MNKILKMTVS FTIGFQNMVK NTTCDWSLTR TSPKSWQFRC
TDLWETCVRC SGDLQPPPAN SPVLVHQIDL VPLVQETGLF YVDEIIIADT NVTVSQADSG
TARPGGNLVE SVSVVGSPPV YSVTSWLAGC GTELPLITAR SVPTEGTEEG SGLVLATTQR
QQRTSPPLGG HFRIQLPNTV ISEVPVQISA HHLHQLLQNN ADEFTSRYLN ASDFSVKEDL
YTCYERVWTL SWSTQIGDLP NFIRVSDENL TGVNPAAAMR VVYDGGVFLG PIFGDMLATA
NQHSQVVVRV NDVPAHCPGS CSFQYLQGST PCVHSVWYSV DGDVNLMIYI TGTGFSGDSQ
FLQVTVNKMN CKVIFSNQTN VVCQTDLLPV GVHRILMLVR PSGLAISATG EDLFLNVEPR
LDTVEPSTAA DIGGLWATIR GSSLEGVSLV LFGSYSCAIN VTTSNSSRIQ CKVPPRGKDG
HIVNVTVIRG NHSAVLPRAF TYVSSLNPVI VTLSRNTSNI AGGETLVIGV ARLVNYTDLD
VEVHIQDALA LVHTQSAWGL EVALPALSAG LHRISVSING ISIHSQGVDL HIQYLTEVFS
IEPCCGSLLG GTILSISGIG FSRDPASVWV LVGNRSCDIV NLTEASIWCE TLPAPQIPDA
GAPTVPAAVE VWAGNRSFAH GPSPSLVGNG FTFMYEAAAT PVVTAMQGEI TNSSLSLRVG
GSNLSNSVIL LGNLNCDAET QSFQGNSSLS GCSIPLHSLE AGIYPLQVRQ KQMGFANMSA
VPQQFAVTPR IMAIFPSQGS ACGGTILTVR GLLLNSRTRS VRVDLSGPFT CEILSLGDHT
ILCQVSLEGD PLPGASFSLN VTVLVNGITS ECHGNCTLFI REEASPVMDT LSTNTSGSLT
TVLIRGERLG TTADEPMVFV DDQLLCNVTF FNASHVVCQT RDLAPGPHYL SVFYTRNGYA
CSGNVSRHFY IMPQVFHYFP KNFSIHGGSL LTIEGTGLRG QNTTSVYIDQ QACLMVNIGA
ELIRCIVPTG NGSAALEIEV DGLWYHIGVI GYSNAFTPEL ISISQSDGIL TFAVAQISGA
ANIDIFIGMS PCVGVSGNHT VLQCMVPSLP AGEYHVRGYD CIRGWASSVL VFTSRVIITA
VKENFGCLGG RLVHVFGAGF SPGNVSAAVC GAPCRVLANA TVSAFSCLVL PLDVSLAFLC
GLKHEEDSCE AARHTYVQCD LTVAVGTERM LESWPYLYIC EESSQCLFVP DHWAESMFPS
FSGLFVSPKV ERDEVLIYNS SCNITMETEA EMECETPNQP ITVKITEIRK RWGQNTQGNF
SLQFCRRWSR THSWFPERLP QDGDNVTVEN GQSLLLDTNT SVLNLLLIKG GKLIFMAPGP
IELRAHAILV SDGGELRIGS EDKPFQGRAQ ITLYGSSHST PFFPYGVKFL AVRNGTLSLH
GSLPEVIVTH LRATAHARDT VLALEDAVDW HPGDEVVIIS GTGVEGAKPM EEIVTVETVQ
DTDVYLKSPL RYSHNFTENW VAGEHHILKV TVALLSRSIT IQGNLTNERE KLLLSCQEAN
APEGNLQHCL YSMSEKMLGS RDMGARVIIQ SFPEEPSQVQ LKGVQFRVLG QAFHKHLSSL
TLVGAMRESF IQGCTVRSSF SRGLSMCGTL GLKVDSNVFY NILGHALLVG TCMEMRYISW
EAIHGRKYDW SGHGNIIRNN VIIQVSGAEG LSNPEMLTPS GIYIRSPTNV IEGNRVCGAG
YGYFFHLVTN QTSQAPLLSF TQNIAHSCTR YGLFVYPKFQ PPWDNVTGIT LFQSFTVWES
AGGAQIFRSS NLRLKNFQVY SCRDFGIDIL ESDANTSVTD SLLLGHFAHK GSLCMSSGIK
TPKRWELMVS NTTFVNFDLI NCVAIRTCSD CSQGQGGFTV KTSQLKFINS SNLVAFPFPH
AAILEDLDGS LSGKNRSHIL ASMETLSASC LVNASFGRVV HGSACGGGVL FHRMSIGLAS
APEVSYDLTM TDSRNKTTTV NYVRDTLSNL HGWMALLLDQ ETYSLRSENL WINRSLQYSA
TFDNFAPGNY LLLVHTDLPP YPDILLRCGS RVGLSFPFLP SPGQNQGCDW FFNSQLRQLT
YLVSGEGRVR VILWVKEGMP PTLSASTSAP ESALKWSLPE TWQGVEEGWG GYNNTLPGPG
DDVLILPNRT VLVDTDLPFF KGLYVMGTLD FPVDRSNVLS VACMVIAGGE LKVGTLENPL
EKEQKLLIFL RASEGVFCDR LNGIHTDPGT IGVYGKVQLY SAYSKNSWTH LGADIASGNE
RIIVEDAVDW HPHDKIILSS SSYEPHEAEV LTVKEVKGHH VRIHERLKHR HIGSVHVTED
GRHIRLAAEV GLLTRNIQIQ PDVSCRGRLF VGPLRKSSRE EFSGVLQLLN VEIQNFGSPL
YSSVEFSNVS EGSWIISSTL HQSCGGGIHA TASHGVLLND NIVFGTAGHG IDLEGQAYTV
TNNLVVLMTQ PAWSTIWVAG IKVNQAKDIN LHGNVVAGSE RVGFHIRGHK CSCGLLWSDN
VAHSSLHGLH LYKESGLDNC TRISGFLAFK NFDYGAMLHI ENSVEIENIT LVDNTIGLLA
VVYVFSAPQN SIKKVQIVLR NSIIVATSSS FDCIQDKVKP LSANLTSTDR APSNPRGGRI
GILWPVFTSE PNQWPQEPWH KVRNDHSISG IMKLQDVTFS SFVKSCYSDD LDVCILPNAE
NTGIMHPITA ERTRMLKIKD KNKFYFPSLQ PRKDLGKVVC PELDCASPRK YLFKDLDGRA
LGLPPPVSIF PKTEAEWTTS FFNAGTYREE QKCTYRFLMQ GFVCKQTDQV VLILDGADAT
WAIQKLYPVV SVTSGFVDIF SSVNANIPCS TSGSVSTFYS ILPTRQITKV CFMDQTPQVL
RFFLLGNKST SKLLLAVFYH ELQNPHVFLG ESFIPPTLVQ SASLLLNESI GANYFNIMDN
LLYVVLQGEE PIEIRSSVSI HLALTVMVSV LEKGWEIVIL ERLTNFLQIG QNQIRFLREI
PGHEETLKAI ADSRAKRKRN CPTVTCASHY RRVSQRRPLM MEMNSYRSSP PTTVETMSKV
IVIEIGDSPT VRSTGMISSL SSNKLQNLAH QVITAQQTGV LENILNMTIG ALLVTQSKGV
IGYGNSSSFK TGNLIYIRPY VLSVLVQPSD GEVGNELPVQ PQLVFLDEQN RRVESLGPPS
EPWTISASLE GASDSVLKGC TQAESQDGYV SFYNLAVLIS GSNWHFIFTV TSPPGVNFTA
RSQSFAVLPV TRKEKSTIIL AASLSSVASW LALSCLVCCW LKRSKSRKTK PEEIPESQTN
NENNHIHTSS KCRESQGPKK EDTVVAEDMR MKVMLGRLNQ CPHQLMNGVS RRKVSRHIVR
EEEAAVPAPG TTGITSHGHT CAPGAPAQQV YLQETGNWKE GQEQLLRYQL AGQDQLLLLP
GLRQERQQLP GQSWLSKQSG RLGLSQEKKA SCGATEAFCL HSVHLEAIQE QL


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