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PKHD1, fibrocystin/polyductin

 E2RK30_CANLF            Unreviewed;      4074 AA.
E2RK30;
30-NOV-2010, integrated into UniProtKB/TrEMBL.
31-OCT-2012, sequence version 2.
28-MAR-2018, entry version 56.
SubName: Full=PKHD1, fibrocystin/polyductin {ECO:0000313|Ensembl:ENSCAFP00000003171};
Name=PKHD1 {ECO:0000313|Ensembl:ENSCAFP00000003171,
ECO:0000313|VGNC:VGNC:44605};
Canis lupus familiaris (Dog) (Canis familiaris).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae;
Canis.
NCBI_TaxID=9615 {ECO:0000313|Ensembl:ENSCAFP00000003171, ECO:0000313|Proteomes:UP000002254};
[1] {ECO:0000313|Ensembl:ENSCAFP00000003171, ECO:0000313|Proteomes:UP000002254}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Boxer {ECO:0000313|Ensembl:ENSCAFP00000003171,
ECO:0000313|Proteomes:UP000002254};
PubMed=16341006; DOI=10.1038/nature04338;
Broad Sequencing Platform;
Lindblad-Toh K., Wade C.M., Mikkelsen T.S., Karlsson E.K., Jaffe D.B.,
Kamal M., Clamp M., Chang J.L., Kulbokas E.J. III, Zody M.C.,
Mauceli E., Xie X., Breen M., Wayne R.K., Ostrander E.A.,
Ponting C.P., Galibert F., Smith D.R., deJong P.J., Kirkness E.F.,
Alvarez P., Biagi T., Brockman W., Butler J., Chin C.-W., Cook A.,
Cuff J., Daly M.J., DeCaprio D., Gnerre S., Grabherr M., Kellis M.,
Kleber M., Bardeleben C., Goodstadt L., Heger A., Hitte C., Kim L.,
Koepfli K.-P., Parker H.G., Pollinger J.P., Searle S.M.J.,
Sutter N.B., Thomas R., Webber C., Baldwin J., Abebe A.,
Abouelleil A., Aftuck L., Ait-Zahra M., Aldredge T., Allen N., An P.,
Anderson S., Antoine C., Arachchi H., Aslam A., Ayotte L.,
Bachantsang P., Barry A., Bayul T., Benamara M., Berlin A.,
Bessette D., Blitshteyn B., Bloom T., Blye J., Boguslavskiy L.,
Bonnet C., Boukhgalter B., Brown A., Cahill P., Calixte N.,
Camarata J., Cheshatsang Y., Chu J., Citroen M., Collymore A.,
Cooke P., Dawoe T., Daza R., Decktor K., DeGray S., Dhargay N.,
Dooley K., Dooley K., Dorje P., Dorjee K., Dorris L., Duffey N.,
Dupes A., Egbiremolen O., Elong R., Falk J., Farina A., Faro S.,
Ferguson D., Ferreira P., Fisher S., FitzGerald M., Foley K.,
Foley C., Franke A., Friedrich D., Gage D., Garber M., Gearin G.,
Giannoukos G., Goode T., Goyette A., Graham J., Grandbois E.,
Gyaltsen K., Hafez N., Hagopian D., Hagos B., Hall J., Healy C.,
Hegarty R., Honan T., Horn A., Houde N., Hughes L., Hunnicutt L.,
Husby M., Jester B., Jones C., Kamat A., Kanga B., Kells C.,
Khazanovich D., Kieu A.C., Kisner P., Kumar M., Lance K., Landers T.,
Lara M., Lee W., Leger J.-P., Lennon N., Leuper L., LeVine S., Liu J.,
Liu X., Lokyitsang Y., Lokyitsang T., Lui A., Macdonald J., Major J.,
Marabella R., Maru K., Matthews C., McDonough S., Mehta T.,
Meldrim J., Melnikov A., Meneus L., Mihalev A., Mihova T., Miller K.,
Mittelman R., Mlenga V., Mulrain L., Munson G., Navidi A., Naylor J.,
Nguyen T., Nguyen N., Nguyen C., Nguyen T., Nicol R., Norbu N.,
Norbu C., Novod N., Nyima T., Olandt P., O'Neill B., O'Neill K.,
Osman S., Oyono L., Patti C., Perrin D., Phunkhang P., Pierre F.,
Priest M., Rachupka A., Raghuraman S., Rameau R., Ray V., Raymond C.,
Rege F., Rise C., Rogers J., Rogov P., Sahalie J., Settipalli S.,
Sharpe T., Shea T., Sheehan M., Sherpa N., Shi J., Shih D., Sloan J.,
Smith C., Sparrow T., Stalker J., Stange-Thomann N., Stavropoulos S.,
Stone C., Stone S., Sykes S., Tchuinga P., Tenzing P., Tesfaye S.,
Thoulutsang D., Thoulutsang Y., Topham K., Topping I., Tsamla T.,
Vassiliev H., Venkataraman V., Vo A., Wangchuk T., Wangdi T.,
Weiand M., Wilkinson J., Wilson A., Yadav S., Yang S., Yang X.,
Young G., Yu Q., Zainoun J., Zembek L., Zimmer A., Lander E.S.;
"Genome sequence, comparative analysis and haplotype structure of the
domestic dog.";
Nature 438:803-819(2005).
[2] {ECO:0000313|Ensembl:ENSCAFP00000003171}
IDENTIFICATION.
STRAIN=Boxer {ECO:0000313|Ensembl:ENSCAFP00000003171};
Ensembl;
Submitted (JUL-2011) to UniProtKB.
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EMBL; AAEX03008386; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AAEX03008387; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AAEX03008388; -; NOT_ANNOTATED_CDS; Genomic_DNA.
RefSeq; XP_005627522.1; XM_005627465.1.
STRING; 9615.ENSCAFP00000003171; -.
PaxDb; E2RK30; -.
Ensembl; ENSCAFT00000003416; ENSCAFP00000003171; ENSCAFG00000002165.
GeneID; 474934; -.
CTD; 5314; -.
VGNC; VGNC:44605; PKHD1.
eggNOG; ENOG410IEIF; Eukaryota.
eggNOG; ENOG410XQ01; LUCA.
GeneTree; ENSGT00780000121902; -.
InParanoid; E2RK30; -.
OMA; WVAGIKV; -.
OrthoDB; EOG091G00JT; -.
TreeFam; TF329582; -.
Proteomes; UP000002254; Chromosome 12.
Bgee; ENSCAFG00000002165; -.
GO; GO:0016324; C:apical plasma membrane; IEA:Ensembl.
GO; GO:0005813; C:centrosome; IEA:Ensembl.
GO; GO:0036064; C:ciliary basal body; IEA:Ensembl.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0072686; C:mitotic spindle; IEA:Ensembl.
GO; GO:0048471; C:perinuclear region of cytoplasm; IEA:Ensembl.
GO; GO:0006874; P:cellular calcium ion homeostasis; IEA:Ensembl.
GO; GO:0060271; P:cilium assembly; IEA:Ensembl.
GO; GO:0001822; P:kidney development; IEA:Ensembl.
GO; GO:0043066; P:negative regulation of apoptotic process; IEA:Ensembl.
GO; GO:0032088; P:negative regulation of NF-kappaB transcription factor activity; IEA:Ensembl.
GO; GO:0051898; P:negative regulation of protein kinase B signaling; IEA:Ensembl.
GO; GO:0008284; P:positive regulation of cell proliferation; IEA:Ensembl.
GO; GO:0010824; P:regulation of centrosome duplication; IEA:Ensembl.
GO; GO:0070372; P:regulation of ERK1 and ERK2 cascade; IEA:Ensembl.
GO; GO:0032006; P:regulation of TOR signaling; IEA:Ensembl.
Gene3D; 2.160.20.10; -; 1.
Gene3D; 2.60.40.10; -; 5.
InterPro; IPR019316; G8_domain.
InterPro; IPR013783; Ig-like_fold.
InterPro; IPR014756; Ig_E-set.
InterPro; IPR002909; IPT_dom.
InterPro; IPR037524; PA14/GLEYA.
InterPro; IPR011658; PA14_dom.
InterPro; IPR006626; PbH1.
InterPro; IPR012334; Pectin_lyas_fold.
InterPro; IPR011050; Pectin_lyase_fold/virulence.
InterPro; IPR028839; PKHD1.
PANTHER; PTHR45107; PTHR45107; 1.
Pfam; PF10162; G8; 2.
Pfam; PF07691; PA14; 1.
Pfam; PF01833; TIG; 8.
SMART; SM01225; G8; 2.
SMART; SM00429; IPT; 5.
SMART; SM00710; PbH1; 9.
SUPFAM; SSF51126; SSF51126; 2.
SUPFAM; SSF81296; SSF81296; 6.
PROSITE; PS51484; G8; 2.
PROSITE; PS51820; PA14; 1.
4: Predicted;
Complete proteome {ECO:0000313|Proteomes:UP000002254};
Membrane {ECO:0000256|SAM:Phobius};
Reference proteome {ECO:0000313|Proteomes:UP000002254};
Signal {ECO:0000256|SAM:SignalP};
Transmembrane {ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAM:Phobius}.
SIGNAL 1 22 {ECO:0000256|SAM:SignalP}.
CHAIN 23 4074 {ECO:0000256|SAM:SignalP}.
/FTId=PRO_5003163621.
TRANSMEM 3854 3877 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 323 483 PA14. {ECO:0000259|PROSITE:PS51820}.
DOMAIN 1928 2049 G8. {ECO:0000259|PROSITE:PS51484}.
DOMAIN 2743 2869 G8. {ECO:0000259|PROSITE:PS51484}.
SEQUENCE 4074 AA; 447576 MW; 173062C7FA7FC244 CRC64;
MIVWLISLMS IEILLLAGPA LSFHIEPKEG SLAGGTWITV IFDGLELEQL YPTNGSQLEI
HLVNVAVPAL PSIPCDVSPV FLDLPVVMCR TRSLLPEVHE GLYYLEAHAG GQVVGSPSPG
LQDCCTFKFS REQTPIVYQV TPPSGVPGKM IHVYGWIITG RSETFDFDAE YIDSPLILEA
QGDKWVTACS LINRQTGSCY PLQENHGLGT LQCRVEGNYI GSQNVSFSVF NKGKSMVHKN
AWLVSAKLDL FLYQTYSEIL SVFPETGSLG GKTDIIITGD FFDNPALVTI AGVPCDIRHM
SPRKIECTTR APGKRARLTA PQAGNRGLLF EVGEAVEGLD LTVATPGYRW QIVPNASSPF
GFWFKEGQPF RARLSGFFVA PETNNYTFWI QADNQASLYF SQSEDPRMKV KVASIRVGTA
DWFDAWEQDR NEGVWQRKTP KLELVGGTRY YLEAEHYGRT PSRGMRIGVQ IHNTWLNPDV
VSTYLREKHQ IRVRAQRLPE IQMLTVSGRG SFFLTWDNVT SQPIPENATA HQIQTAIEEL
LAVKCKLEPL SANILLWLGF EQGPEGSSFE GDLTSGTEPF CGRFSLHQPR RLVLTPPAAQ
KDYWLDRYTH LCIAYKGRMK NILKVTVFFT TDFQNFIKKN ITCDWNLVGT RPNSWQFTCT
DLWETCVHHS MYLQPPLVDS PVLVHRIDLF PLSQETSGFY VDEIIIADTN ITVSQADSET
AHPGGNLVES LCVVGSPPVY NISFWLVGCG QELPLITASI VPTGGEARRS GLVQVTTQRI
QKTSPPLGGY FHIQLPTSVI PDVPVHISAS HLRKLLQNNA DNFTSRYLNS SDLTVMEDLK
SCYEHEWTLS WSSQVGDLPN FIRVSDANLT GVNPAATVRV VYDGGVFLGP VFGDMLVTAN
QHTQVVVRVN DIPAHCSGSC SFQYLEGSTP QIHSAWYSLD GDISLLIYIF GINFSGDPQA
LEIMVNKTNC KVIFSNQTNV ICQTDLLPVG MHRLFMVVRP FGRAINTSGE ALFLSVEPRL
DAVEPSRAAE IGGLWATIQG SGLEDVSLVL FGSQSCAINI TTSNSRRIQC RVPPRGKDGP
VVNLTVVSGD HSAVLPMAFT YVSSLNPVIT SLSRNRSNIA GGDTLFIRMA LLVNYTDLDV
EVCIQNTLAP AHVQMPQGLE VVLPPLPAGL YSISVSINGI SIRSPGVDLH IQYITEVFSI
EPCCGSLLGG TILSISGIGF IRDPTLVWVF VGNRSCDILN STETVIWCET PPAALLPDSN
IPAIPVPMEI WAGNVSFARE SLLNLSFTFL YEAAMTPVVT AMRGEIINNS LRFYVEGNNL
SNSVILLGVS HCDLETQTLR NNVSLSGCSF PLHSLEAGFY PLQVRQKQMG FANMSAVPQQ
YVITPWIMAI SPTHGSACGG TVLTVRGLAL SSRKRSVQVD LLGPFTCVIL SLGHQTILCQ
INKVNDSFPD VSFTLNVTVI VNGLPSECQG NCTLFLQEET TPIVDSLTTN ISGSLTMVLI
RGRKLGITAV EPMVFVDDHL PCIVTFFNAS YVICWISDLT PGLHYVSVFH ARNGYACFGN
VSRHFYILPQ VFHYFPKNFS IHGGSLLTVE GTALRGKNST LVYVGQQACL TVSISTELIQ
CIVPAGNGSV GLVIEVDGLS YQMGVIGYSS AFTPRLLSIS QTDDVLTFAV AQVSGAENVD
IFIGMSPCVG ISGNHTVLQC VVSSLPAGEY PVRGYDRMRG WASSVLVFTS TATISGVTEN
FGCLGGRLVH VFGAGFSPGN VSAAVCGAPC QVLANATVSA FSCLVLPLNV SLAFLCGLKH
SEESCEASSS TYVQCDLTVT VGTETLPQSW PYLYICEESP QCLFAPDHWT ESTFPWFSGL
FISPKVERDE VLIYNSSCNI AMETEAKMEC ETPNQPITAK ITEIRKSRGQ STQGNFSLQF
CLRWSRTHSW FPERVPQDGD NVTVENGQLL LLDTNTSILN LLHIKGGKLI FMDPGPIELR
AHAILISDGG ELRIGSEDKP FQGKAEIKLY GSSHSTPFFP YGVKFLAVRN GTLSLHGLLP
EVTFTHLQAA AYAGDTVLAL EDAVDWHPGD EAVIISRIGV GGAKPMEEIV IVEAVHNTDL
YLRSPLRYSH NFTENWVAGV LHILKVTVVL LSRSITIQGN LTAERMKHLA SCQEASDSEG
NLQDCLYSKS EKMLGSRDLG ARVIVQSFPE EPSRVQLRGV QFRDLGQAFR KHVSALTLVG
AMRDSYVQGC TVWSSFNRGL SMSMTLGLKV DSNIFYNILG HALLVGTDMD IKYISWEAAP
EKKPDWSEQG NIIRNNVIIS ISGTEGLSSP EMLTPSGIYI LNPTNVVEGN RVYVAGLGYF
FHLVTSQTSQ APLLSFTQNI AHSCTRYGLF IYPQFQPPWD DGRGPTLFQN FTVWGSAGGA
RISRSSNLHL KNFQVYSCRD FGIDILESDA NTSVTDSLLL GHFAHKGSLC MSAGIKTPKR
WELIISNTTF VNFDLTDCVS IRTCSGCSRG QGGFTVKTNQ LKFINSPNLV AFPFPHAAIL
EDLDGSLSGR NRSHILASME TLSASCLVNL SFSQIVPGSV CGEDVIFHHM SIGLANAPNV
SYDLTITDSR NKTTTVNYVR DTLSNLYGWM ALLLDQETYS LQFETPWISR SLQYSATFGS
FAPGNYLLLV HTVLWPYPDI LVRCGSQEGR SLPSLPLPGQ DQGCDWFFNT QLRQLIYLVS
GEGQVQVTLQ VKEGVPPTIS ASTSAPESAL KWSLPEAWTG IEEGWGGHNH TIPGPGDDIL
ILPNRTVLVD TNLPFLKGLY VMGTLEFPVD RSNVLSVACM VIAGGELKVG TLDNPLEKEQ
KLLILLRASE GIFCDRLNGI HIDPGTIGVY GKVQLHGACP KKSWTRLAAD IASGNERIIV
EDAVDWRPHD KIVLSSSSYE PHEAEILTVK EVQAHHVKIY ERLKYRHIGS VHVMEDGRCI
RLAAEVGLLT RNIQIQPDIS CRARLLVGSF RNSSSKEFSG VLQLSNVEIQ NFGSPLYSSI
EFTNASAGSW IISSSLHQSC SGGIRAAASH GIILNDNIVF GTVGHGIDLE GQNFSLSNNL
VVLMTQSAWS TVWVAGIKAN QAKDINLYGN VVAGSERIGF HIQGHRCSSP EARWSDNVAH
SSLHGLHLYK ENGLDNCTGI SGFLAFKNFD YGAMLHVENS VEIENITLVD NSIGLLATVY
VSSVPKSHIE NVQIVLRNSV IIATSSSFDC IQDRVKPRSA NLTSSDRAPS NPRGGRVGIL
WPIFTSEPNW WPQEPWHRVR NGHSTSGILK LQDVTFSNFV KSCYSDDLDI CILPNVENTG
IMHPIMAEGT RMLKIKDKNK FYFPPLQARK GLGILVCPES DCENPRKYLF KDLDGRALGL
PPPVSVFPKT EAEWTGSFFN TGTFREEQKC TYRALIQGYI CKQSDQAILI LDNADATWAM
QKLYPVVSVT RGFVDTFSSV NADAPCSTSG SASTFYSILP TREITKICFV DQTPQVLRFF
LLGNRSTSKL LLAVFYHELQ NPRVFIGESF IPPIMVQSTS SLLDESIGSN YFSILDNLLY
VVLQGQEPIE IHSGVSIHLA LTVMFSVLEK GWEIIILERL TDFLQVSQDQ IRFIHEMPGN
EATLKAIADN KAKRKRNCPT VTCASPYRVG QRRPLMTEMS SYRVPSPTIM ETASKVIVIE
IGDLPTIRST RLISYLTSNK LQNLAHQIIT AQQTGVLENV LNMTIGALLV TQPKGVTDYG
NASSFKTGNF IYIRPYALSV LVQPSDGEVG KELTVQPRLV FLDKQNQRIE SLGPPSEPWA
ISVSLEGTSD PVLKGCTQAE SQDGYVSFSN LAVLISGSNW HFIFTVTSPP GANFTARSRS
FTVLPAAPSE KSSIILAVSL CSVASWLALC CLVCCWFRKS KSRKIKSEDI SEFKTNDQKS
HIHMSSKHPR SQETKKEDTM MGEDMKIKVI MDKVNQLPHQ SLNGVSRRKV SRRAVREEGS
SREEDVVPAP RIISITSQGH TCVPGSPDQQ IYLQEAGNWK EAQEQLVSYQ LAGQDQRLLL
CPDLRRERQQ LQGQSQLGQE GGSVGLSQEK KASGGATQAS CPHLVHPETI QEQL


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