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Pair-rule protein odd-paired

 OPA_DROME               Reviewed;         609 AA.
P39768; A0JQ21; Q960Y0; Q9VN66;
01-FEB-1995, integrated into UniProtKB/Swiss-Prot.
29-MAY-2007, sequence version 2.
05-DEC-2018, entry version 163.
RecName: Full=Pair-rule protein odd-paired;
Name=opa; ORFNames=CG1133;
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227;
[1]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY, AND
DEVELOPMENTAL STAGE.
TISSUE=Embryo;
PubMed=8288124; DOI=10.1101/gad.8.1.105;
Benedyk M.J., Mullen J.R., Dinardo S.;
"Odd-paired: a zinc finger pair-rule protein required for the timely
activation of engrailed and wingless in Drosophila embryos.";
Genes Dev. 8:105-117(1994).
[2]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, TISSUE SPECIFICITY, AND
DEVELOPMENTAL STAGE.
PubMed=7781900; DOI=10.1006/dbio.1995.1171;
Cimbora D.M., Sakonju S.;
"Drosophila midgut morphogenesis requires the function of the
segmentation gene odd-paired.";
Dev. Biol. 169:580-595(1995).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley;
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G.,
Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A.,
Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X.,
Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[4]
GENOME REANNOTATION.
STRAIN=Berkeley;
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D.N.J., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=Berkeley; TISSUE=Embryo;
PubMed=12537569; DOI=10.1186/gb-2002-3-12-research0080;
Stapleton M., Carlson J.W., Brokstein P., Yu C., Champe M.,
George R.A., Guarin H., Kronmiller B., Pacleb J.M., Park S., Wan K.H.,
Rubin G.M., Celniker S.E.;
"A Drosophila full-length cDNA resource.";
Genome Biol. 3:RESEARCH0080.1-RESEARCH0080.8(2002).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=Berkeley;
Stapleton M., Carlson J.W., Frise E., Kapadia B., Park S., Wan K.H.,
Yu C., Celniker S.E.;
Submitted (NOV-2006) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Transcription factor essential for parasegmental
subdivision of the embryo. It is involved in the activation of
wingless (wg) in odd parasegments. It is also required for the
timely activation of wg in the remaining parasegments and for the
timely activation of engrailed (en) in all parasegments.
{ECO:0000269|PubMed:7781900, ECO:0000269|PubMed:8288124}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
-!- TISSUE SPECIFICITY: Expressed throughout all segment primordia;
expressed ubiquitously in the ectoderm and mesoderm precursors.
{ECO:0000269|PubMed:7781900, ECO:0000269|PubMed:8288124}.
-!- DEVELOPMENTAL STAGE: The peak expression is seen between 2 and 12
hours of embryogenesis. Expression continues through the larval
instars and during pupation although at lower levels compared with
embryogenesis. {ECO:0000269|PubMed:7781900,
ECO:0000269|PubMed:8288124}.
-!- SIMILARITY: Belongs to the GLI C2H2-type zinc-finger protein
family. {ECO:0000305}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; U04435; AAA18958.1; -; mRNA.
EMBL; S78339; AAB34592.1; -; mRNA.
EMBL; AE014297; AAF52084.1; -; Genomic_DNA.
EMBL; AY051783; AAK93207.1; -; mRNA.
EMBL; BT029391; ABK56895.1; -; mRNA.
PIR; A49839; A49839.
RefSeq; NP_524228.2; NM_079504.4.
UniGene; Dm.1066; -.
ProteinModelPortal; P39768; -.
SMR; P39768; -.
BioGrid; 65820; 32.
DIP; DIP-17067N; -.
IntAct; P39768; 6.
STRING; 7227.FBpp0078477; -.
PaxDb; P39768; -.
PRIDE; P39768; -.
EnsemblMetazoa; FBtr0078836; FBpp0078477; FBgn0003002.
GeneID; 40605; -.
KEGG; dme:Dmel_CG1133; -.
CTD; 40605; -.
FlyBase; FBgn0003002; opa.
eggNOG; KOG1721; Eukaryota.
eggNOG; COG5048; LUCA.
GeneTree; ENSGT00940000165216; -.
InParanoid; P39768; -.
KO; K09227; -.
OMA; IFHSMHE; -.
OrthoDB; EOG091G0M59; -.
SignaLink; P39768; -.
GenomeRNAi; 40605; -.
PRO; PR:P39768; -.
Proteomes; UP000000803; Chromosome 3R.
Bgee; FBgn0003002; Expressed in 27 organ(s), highest expression level in embryo.
Genevisible; P39768; DM.
GO; GO:0005634; C:nucleus; IDA:FlyBase.
GO; GO:0001205; F:distal enhancer DNA-binding transcription activator activity, RNA polymerase II-specific; IMP:FlyBase.
GO; GO:0003700; F:DNA-binding transcription factor activity; ISS:FlyBase.
GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IDA:FlyBase.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0000980; F:RNA polymerase II distal enhancer sequence-specific DNA binding; IDA:FlyBase.
GO; GO:0000977; F:RNA polymerase II regulatory region sequence-specific DNA binding; IDA:FlyBase.
GO; GO:0008101; P:decapentaplegic signaling pathway; IMP:FlyBase.
GO; GO:0007455; P:eye-antennal disc morphogenesis; IMP:FlyBase.
GO; GO:0008354; P:germ cell migration; IMP:FlyBase.
GO; GO:0007494; P:midgut development; IMP:FlyBase.
GO; GO:0007366; P:periodic partitioning by pair rule gene; IEA:UniProtKB-KW.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IMP:FlyBase.
InterPro; IPR036236; Znf_C2H2_sf.
InterPro; IPR013087; Znf_C2H2_type.
Pfam; PF00096; zf-C2H2; 2.
SMART; SM00355; ZnF_C2H2; 5.
SUPFAM; SSF57667; SSF57667; 2.
PROSITE; PS00028; ZINC_FINGER_C2H2_1; 3.
PROSITE; PS50157; ZINC_FINGER_C2H2_2; 4.
2: Evidence at transcript level;
Activator; Complete proteome; Developmental protein; DNA-binding;
Metal-binding; Nucleus; Pair-rule protein; Reference proteome; Repeat;
Transcription; Transcription regulation; Zinc; Zinc-finger.
CHAIN 1 609 Pair-rule protein odd-paired.
/FTId=PRO_0000047015.
ZN_FING 210 249 C2H2-type 1; atypical.
{ECO:0000255|PROSITE-ProRule:PRU00042}.
ZN_FING 258 285 C2H2-type 2. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 291 315 C2H2-type 3. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 321 345 C2H2-type 4. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 351 375 C2H2-type 5. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
COMPBIAS 33 61 Gln-rich.
COMPBIAS 94 122 Ala-rich.
COMPBIAS 136 140 Poly-His.
COMPBIAS 394 398 Poly-Ser.
COMPBIAS 414 434 Ser-rich.
COMPBIAS 453 466 Ser-rich.
COMPBIAS 470 494 Gln-rich.
COMPBIAS 529 567 Ala/His-rich.
COMPBIAS 593 599 Poly-His.
CONFLICT 587 587 P -> S (in Ref. 5; AAK93207).
{ECO:0000305}.
CONFLICT 606 606 A -> R (in Ref. 1; AAA18958 and 2;
AAB34592). {ECO:0000305}.
SEQUENCE 609 AA; 66238 MW; 434CF5B7212FD6CD CRC64;
MMMNAFIEPA QHHLASYGLR MSPNTTASNS NAQQQQQQQL EMTQQQQQQQ QQQQQQQQQD
QESAAATAAA YQNSGYGHFN SYASRDFLLG RREAEYGVAG SAGQASAAAD SMLFSGFPAQ
AAELGSGFGQ HPFHSHHHHH QMRMGMADAY AAGHPYNHHG NFPTAAVHHP VVHHPSHHAM
SAMHPAGAGA FLRYMRHQPA SSASSVKQEM QCLWIDPDQP GLVPPGGRKT CNKVFHSMHE
IVTHLTVEHV GGPECTTHAC FWVGCSRNGR PFKAKYKLVN HIRVHTGEKP FACPHPGCGK
VFARSENLKI HKRTHTGEKP FKCEHEGCDR RFANSSDRKK HSHVHTSDKP YNCRINGCDK
SYTHPSSLRK HMKVHGNVDE KSPSHGYDSE GEESSSSSII TGGAQTPPST RLDGSAGSSS
GVSSLSGGSG IKSSPHSIKS EPNPMHSVHL GASSSGSSST ASSSASHLLQ HQQHQHQQQQ
QQQQHQQQAQ QQQQLTAHPS DPKSSPALQL MAASASAYLP PPLGPPPSHH HHPHHHQAAP
SPGAAAASAS MLHHNHHLLY HPAAQHHPPS DWYHTTAPSG SAEAMNPLNH FGHHHHHHHL
MHPGAATAY


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