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Peroxisomal membrane protein 13 (ABSTINENCE BY MUTUAL CONSENT) (Peroxin-13) (AtPEX13) (Peroxisome biogenesis protein 13) (Pex13p) (Protein ABERRANT PEROXISOME MORPHOLOGY 2) (Protein AMC)

 PEX13_ARATH             Reviewed;         304 AA.
Q9SRR0; C0Z2M3;
11-JAN-2011, integrated into UniProtKB/Swiss-Prot.
01-MAY-2000, sequence version 1.
30-AUG-2017, entry version 86.
RecName: Full=Peroxisomal membrane protein 13 {ECO:0000303|PubMed:16813573};
AltName: Full=ABSTINENCE BY MUTUAL CONSENT {ECO:0000303|PubMed:18160292};
AltName: Full=Peroxin-13 {ECO:0000303|PubMed:16813573};
Short=AtPEX13 {ECO:0000303|PubMed:16813573};
AltName: Full=Peroxisome biogenesis protein 13 {ECO:0000303|PubMed:16813573};
AltName: Full=Pex13p {ECO:0000303|PubMed:16813573};
AltName: Full=Protein ABERRANT PEROXISOME MORPHOLOGY 2 {ECO:0000303|PubMed:16813573};
AltName: Full=Protein AMC {ECO:0000303|PubMed:18160292};
Name=PEX13 {ECO:0000303|PubMed:16813573};
Synonyms=AMC {ECO:0000303|PubMed:18160292},
APM2 {ECO:0000303|PubMed:16813573};
OrderedLocusNames=At3g07560 {ECO:0000312|Araport:AT3G07560};
ORFNames=F21O3.27 {ECO:0000312|EMBL:AAF02160.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130713; DOI=10.1038/35048706;
Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M.,
Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B.,
Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P.,
De Simone V., Choisne N., Artiguenave F., Robert C., Brottier P.,
Wincker P., Cattolico L., Weissenbach J., Saurin W., Quetier F.,
Schaefer M., Mueller-Auer S., Gabel C., Fuchs M., Benes V.,
Wurmbach E., Drzonek H., Erfle H., Jordan N., Bangert S.,
Wiedelmann R., Kranz H., Voss H., Holland R., Brandt P., Nyakatura G.,
Vezzi A., D'Angelo M., Pallavicini A., Toppo S., Simionati B.,
Conrad A., Hornischer K., Kauer G., Loehnert T.-H., Nordsiek G.,
Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J., Climent J.,
Navarro P., Collado C., Perez-Perez A., Ottenwaelder B., Duchemin D.,
Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
Monfort A., Argiriou A., Flores M., Liguori R., Vitale D.,
Mannhaupt G., Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W.,
Mayer K.F.X., Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J.,
Rooney T., Rizzo M., Walts A., Utterback T., Fujii C.Y., Shea T.P.,
Creasy T.H., Haas B., Maiti R., Wu D., Peterson J., Van Aken S.,
Pai G., Militscher J., Sellers P., Gill J.E., Feldblyum T.V.,
Preuss D., Lin X., Nierman W.C., Salzberg S.L., White O., Venter J.C.,
Fraser C.M., Kaneko T., Nakamura Y., Sato S., Kato T., Asamizu E.,
Sasamoto S., Kimura T., Idesawa K., Kawashima K., Kishida Y.,
Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Muraki A.,
Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
Watanabe A., Yamada M., Yasuda M., Tabata S.;
"Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana.";
Nature 408:820-822(2000).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
STRAIN=cv. Columbia;
PubMed=19423640; DOI=10.1093/dnares/dsp009;
Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M.,
Seki M., Shinozaki K.;
"Analysis of multiple occurrences of alternative splicing events in
Arabidopsis thaliana using novel sequenced full-length cDNAs.";
DNA Res. 16:155-164(2009).
[5]
FUNCTION, SUBCELLULAR LOCATION, MUTAGENESIS OF 263-GLN--ASN-304, AND
INTERACTION WITH PEX5; PEX7 AND PEX14.
PubMed=16813573; DOI=10.1111/j.1365-313X.2006.02809.x;
Mano S., Nakamori C., Nito K., Kondo M., Nishimura M.;
"The Arabidopsis pex12 and pex13 mutants are defective in both
PTS1- and PTS2-dependent protein transport to peroxisomes.";
Plant J. 47:604-618(2006).
[6]
FUNCTION.
PubMed=17478547; DOI=10.1093/pcp/pcm053;
Nito K., Kamigaki A., Kondo M., Hayashi M., Nishimura M.;
"Functional classification of Arabidopsis peroxisome biogenesis
factors proposed from analyses of knockdown mutants.";
Plant Cell Physiol. 48:763-774(2007).
[7]
FUNCTION, DISRUPTION PHENOTYPE, TISSUE SPECIFICITY, AND SUBCELLULAR
LOCATION.
PubMed=18160292; DOI=10.1016/j.cub.2007.11.067;
Boisson-Dernier A., Frietsch S., Kim T.H., Dizon M.B., Schroeder J.I.;
"The peroxin loss-of-function mutation abstinence by mutual consent
disrupts male-female gametophyte recognition.";
Curr. Biol. 18:63-68(2008).
[8]
FUNCTION.
PubMed=19594707; DOI=10.1111/j.1365-313X.2009.03970.x;
Singh T., Hayashi M., Mano S., Arai Y., Goto S., Nishimura M.;
"Molecular components required for the targeting of PEX7 to
peroxisomes in Arabidopsis thaliana.";
Plant J. 60:488-498(2009).
[9]
INTERACTION WITH APEM9.
PubMed=24510720; DOI=10.1105/tpc.113.121087;
Li X.R., Li H.J., Yuan L., Liu M., Shi D.Q., Liu J., Yang W.C.;
"Arabidopsis DAYU/ABERRANT PEROXISOME MORPHOLOGY9 is a key regulator
of peroxisome biogenesis and plays critical roles during pollen
maturation and germination in planta.";
Plant Cell 26:619-635(2014).
-!- FUNCTION: Involved in PTS1- and PTS2-dependent protein import into
peroxisomes (PubMed:16813573, PubMed:17478547). Required for PTS1-
dependent protein import into pollen peroxisomes
(PubMed:18160292). Acts as a docking factor on peroxisomal
membranes (PubMed:16813573). Required for the proper targeting of
PEX7 to the peroxisome (PubMed:19594707). Required for the
export/release of receptors on the peroxisome membrane
(PubMed:19594707). Essential for pollen-tube discharge that take
place only in the presence of functional peroxisomes in either the
male or the female gametophyte (PubMed:18160292).
{ECO:0000269|PubMed:16813573, ECO:0000269|PubMed:17478547,
ECO:0000269|PubMed:18160292, ECO:0000269|PubMed:19594707}.
-!- SUBUNIT: Interacts (via N-terminus) with PEX7, but not with PEX5
or PEX14 (PubMed:16813573). Interacts with APEM9 (via N-terminus)
(PubMed:24510720). {ECO:0000269|PubMed:16813573,
ECO:0000269|PubMed:24510720}.
-!- SUBCELLULAR LOCATION: Peroxisome membrane
{ECO:0000305|PubMed:16813573}; Peripheral membrane protein
{ECO:0000305|PubMed:16813573}. Peroxisome
{ECO:0000269|PubMed:18160292}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q9SRR0-1; Sequence=Displayed;
Name=2;
IsoId=Q9SRR0-2; Sequence=VSP_040377;
-!- TISSUE SPECIFICITY: Highly expressed in pollen. Detected in
shoots, roots, stems, leaves, inflorescences and emasculated
postils. Strongly expressed in both male and female gametophytes
during fertilization. {ECO:0000269|PubMed:18160292}.
-!- DISRUPTION PHENOTYPE: Lethal, when homozygous.
{ECO:0000269|PubMed:18160292}.
-!- SIMILARITY: Belongs to the peroxin-13 family. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; AC009853; AAF02160.1; -; Genomic_DNA.
EMBL; CP002686; AEE74561.1; -; Genomic_DNA.
EMBL; AY075689; AAL77696.1; -; mRNA.
EMBL; AY093745; AAM10369.1; -; mRNA.
EMBL; AK318837; BAH56952.1; -; mRNA.
RefSeq; NP_187412.1; NM_111634.6. [Q9SRR0-1]
UniGene; At.28242; -.
ProteinModelPortal; Q9SRR0; -.
BioGrid; 5280; 2.
IntAct; Q9SRR0; 1.
STRING; 3702.AT3G07560.1; -.
TCDB; 3.A.20.1.2; the peroxisomal protein importer (ppi) family.
iPTMnet; Q9SRR0; -.
PaxDb; Q9SRR0; -.
EnsemblPlants; AT3G07560.1; AT3G07560.1; AT3G07560. [Q9SRR0-1]
GeneID; 819945; -.
Gramene; AT3G07560.1; AT3G07560.1; AT3G07560.
KEGG; ath:AT3G07560; -.
Araport; AT3G07560; -.
TAIR; locus:2079621; AT3G07560.
eggNOG; ENOG410IX0C; Eukaryota.
eggNOG; ENOG4111WZ3; LUCA.
HOGENOM; HOG000240473; -.
InParanoid; Q9SRR0; -.
KO; K13344; -.
OMA; WERSGGE; -.
OrthoDB; EOG09360OCF; -.
PhylomeDB; Q9SRR0; -.
PRO; PR:Q9SRR0; -.
Proteomes; UP000006548; Chromosome 3.
ExpressionAtlas; Q9SRR0; baseline and differential.
Genevisible; Q9SRR0; AT.
GO; GO:0005778; C:peroxisomal membrane; IDA:TAIR.
GO; GO:0006635; P:fatty acid beta-oxidation; IMP:TAIR.
GO; GO:0016558; P:protein import into peroxisome matrix; IDA:TAIR.
InterPro; IPR035463; Pex13.
PANTHER; PTHR19332; PTHR19332; 1.
1: Evidence at protein level;
Alternative splicing; Complete proteome; Membrane; Peroxisome;
Peroxisome biogenesis; Protein transport; Reference proteome;
Translocation; Transport.
CHAIN 1 304 Peroxisomal membrane protein 13.
/FTId=PRO_0000403359.
COMPBIAS 81 177 Gly-rich.
COMPBIAS 140 172 Met-rich.
COMPBIAS 293 297 Poly-Gly.
VAR_SEQ 130 293 Missing (in isoform 2).
{ECO:0000303|PubMed:19423640}.
/FTId=VSP_040377.
MUTAGEN 263 304 Missing: In apm2; reduced protein
transport to peroxisome and repressed
plant growth.
{ECO:0000269|PubMed:16813573}.
SEQUENCE 304 AA; 31286 MW; 246722710D2D3D6C CRC64;
MASQPAGGSP PKPWEKEGNT SGPNPFRPPS NTSTAGSVEA SGTANPGEVV PPPVNRPNTA
ANMNSLSRPV PARPWEQQNY GSTMGGGYGS NLGMTSGYGS GTYGSALGGY GSSYGGGMYG
GSSMYRGGYG GGGLYGSSGM YGGGAMGGYG GTMGGYGMGM GTGMGMGMGM GMGGPYGSQD
PNDPFNQPPS PPGFWISFLR VMQGAVNFFG RVAMLIDQNT QAFHMFMSAL LQLFDRGGML
YGELARFVLR MLGVRTRPRK MQQPPQGPNG LPLPHQPHGN QNYLEGPKTA APGGGGGWDN
VWGN


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