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Phosphodiesterase (EC 3.1.4.-)

 M9NF02_DROME            Unreviewed;       952 AA.
M9NF02;
26-JUN-2013, integrated into UniProtKB/TrEMBL.
26-JUN-2013, sequence version 1.
18-JUL-2018, entry version 49.
RecName: Full=Phosphodiesterase {ECO:0000256|RuleBase:RU363067};
EC=3.1.4.- {ECO:0000256|RuleBase:RU363067};
Name=Pde1c {ECO:0000313|EMBL:AFH03668.1,
ECO:0000313|FlyBase:FBgn0264815};
Synonyms=CG14940 {ECO:0000313|EMBL:AFH03668.1},
CG14942 {ECO:0000313|EMBL:AFH03668.1},
CG14943 {ECO:0000313|EMBL:AFH03668.1},
CG14944 {ECO:0000313|EMBL:AFH03668.1},
CG31757 {ECO:0000313|EMBL:AFH03668.1},
CG31758 {ECO:0000313|EMBL:AFH03668.1},
CG42325 {ECO:0000313|EMBL:AFH03668.1},
Dmel\CG44007 {ECO:0000313|EMBL:AFH03668.1},
mdcds_1440 {ECO:0000313|EMBL:AFH03668.1},
PDE1C {ECO:0000313|EMBL:AFH03668.1},
PDE1c {ECO:0000313|EMBL:AFH03668.1};
ORFNames=CG44007 {ECO:0000313|EMBL:AFH03668.1,
ECO:0000313|FlyBase:FBgn0264815},
Dmel_CG44007 {ECO:0000313|EMBL:AFH03668.1};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AFH03668.1, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AFH03668.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AFH03668.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AFH03668.1, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AFH03668.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084-RESEARCH0084(2002).
[5] {ECO:0000313|EMBL:AFH03668.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:AFH03668.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[7] {ECO:0000313|EMBL:AFH03668.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[8] {ECO:0000313|EMBL:AFH03668.1, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
-!- COFACTOR:
Name=a divalent metal cation; Xref=ChEBI:CHEBI:60240;
Evidence={ECO:0000256|RuleBase:RU363067};
Note=Binds 2 divalent metal cations per subunit. Site 1 may
preferentially bind zinc ions, while site 2 has a preference for
magnesium and/or manganese ions. {ECO:0000256|RuleBase:RU363067};
-!- SIMILARITY: Belongs to the cyclic nucleotide phosphodiesterase
family. {ECO:0000256|RuleBase:RU363067,
ECO:0000256|SAAS:SAAS01040771}.
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EMBL; AE014134; AFH03668.1; -; Genomic_DNA.
RefSeq; NP_001245994.1; NM_001259065.2.
UniGene; Dm.7664; -.
ProteinModelPortal; M9NF02; -.
EnsemblMetazoa; FBtr0334135; FBpp0306252; FBgn0264815.
GeneID; 34594; -.
CTD; 5137; -.
FlyBase; FBgn0264815; Pde1c.
eggNOG; KOG3688; Eukaryota.
eggNOG; ENOG410XQDD; LUCA.
GeneTree; ENSGT00760000118889; -.
OrthoDB; EOG091G04C4; -.
GenomeRNAi; 34594; -.
Proteomes; UP000000803; Chromosome 2L.
Bgee; FBgn0264815; -.
ExpressionAtlas; M9NF02; baseline and differential.
GO; GO:0004114; F:3',5'-cyclic-nucleotide phosphodiesterase activity; IEA:InterPro.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0007165; P:signal transduction; IEA:InterPro.
CDD; cd00077; HDc; 1.
InterPro; IPR003607; HD/PDEase_dom.
InterPro; IPR023088; PDEase.
InterPro; IPR002073; PDEase_catalytic_dom.
InterPro; IPR023174; PDEase_CS.
InterPro; IPR013706; PDEase_N.
Pfam; PF00233; PDEase_I; 1.
Pfam; PF08499; PDEase_I_N; 1.
PRINTS; PR00387; PDIESTERASE1.
SMART; SM00471; HDc; 1.
PROSITE; PS00126; PDEASE_I_1; 1.
PROSITE; PS51845; PDEASE_I_2; 1.
1: Evidence at protein level;
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Hydrolase {ECO:0000256|RuleBase:RU363067,
ECO:0000256|SAAS:SAAS01040760, ECO:0000313|EMBL:AFH03668.1};
Metal-binding {ECO:0000256|RuleBase:RU363067,
ECO:0000256|SAAS:SAAS01040765};
Proteomics identification {ECO:0000213|PeptideAtlas:M9NF02};
Reference proteome {ECO:0000313|Proteomes:UP000000803}.
DOMAIN 510 904 PDEase. {ECO:0000259|PROSITE:PS51845}.
SEQUENCE 952 AA; 101906 MW; B3A9CCBD6A0503BF CRC64;
MSNLNLTNAP RRLAPGTATP VMSRAPVPGS SPAVPAAVPA VLTARLTSDN TVASGVASQQ
VLHHQVSSER HPPSSCPDSP IRRVSSSLKK SALDFASRFF NKCKAATFTV DGATYTIVAS
TPESLPSKRD EASGGPGSSG GTSGAATSSS SSGGGAASGA ASGSVGPASG TATGTGSASG
GAGGVSTPAQ EAASPTVSEL SGSGSNATIN GQVARHGSLT IIRRTNSRNF TQFDGQLASP
SSTACSSTAP GIGFAQTPLS EPLAERLSFR ASGGSNGSAS AGDSRSSNQG PSNSGPAASA
AVKMQPSSPN ATNYLADNIQ ISSANLSQTE MVVGRDSADY TAMHSINVGV GNSFLRGDTD
IPQESGHSFE TPSNMSFTAG QWDTESLPPV DTPDALNKAA GRIRSLLRRM DHETVAYEDM
QRNLHYAARV LEAVFIDESR RLADEDDELS EVQPDAVPPE VREWLASTFT RQMATSRRKS
DEKPKFRSVA HAIRAGIFVD RMYRRVSSSA LTAFPPDVVR LLKNLDDWTF DVFALTEAAS
GQVVKYVAYE LFNRYGSIHK FKIAPGILEA FLHRVEEGYC RYRNPYHNNL HAVDVMQTIH
YCLCNTGLMN WLTDLEIFAS LLAALLHDYE HTGTTNNFHV MSGSETALLY NDRAVLENHH
ASASFRLLRE DEYNILSHLS REEFRELRGL VIEMVLGTDM TNHFQQMKAM RQLLTLQEAT
IDKQKVLSLV LHCCDISHPA KQWGVHHRWT MLLLEEFFRQ GDLEKELGLP FSPLCDRNNT
LVAESQICFI DFIVEPSMGV MSDMLELILA PIAPMNKSKP ATLVEHETTA NSTTNSAIVI
PNSGITPSMD KPRDHRTEAK TTAAECLARK SVTGTTASKF NIPKPWLTCL VENKRIWKEQ
AVKDAEARAL ATAAEEAAAA AAAEAEESKP ETETADGEQS EPAAEPADGA AA


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