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Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic (Psb27-H2) (LOW PSII accumulation 19 protein) (LPA19) (Thylakoid lumenal protein PSB27-H2)

 PB27B_ARATH             Reviewed;         199 AA.
Q9ZVZ9; Q8GXE0;
24-JUL-2013, integrated into UniProtKB/Swiss-Prot.
01-MAY-1999, sequence version 1.
07-NOV-2018, entry version 96.
RecName: Full=Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic;
Short=Psb27-H2;
AltName: Full=LOW PSII accumulation 19 protein;
Short=LPA19;
AltName: Full=Thylakoid lumenal protein PSB27-H2;
Flags: Precursor;
Name=PSB27-2; Synonyms=LPA19; OrderedLocusNames=At1g05385;
ORFNames=T25N20.4;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130712; DOI=10.1038/35048500;
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y.,
Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P.,
Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A.,
Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I.,
Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D.,
Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M.,
Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M.,
Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana.";
Nature 408:816-820(2000).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=11910074; DOI=10.1126/science.1071006;
Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M.,
Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T.,
Shibata K., Shinagawa A., Shinozaki K.;
"Functional annotation of a full-length Arabidopsis cDNA collection.";
Science 296:141-145(2002).
[5]
FUNCTION, SUBCELLULAR LOCATION, INTERACTION WITH D1 (PSBA), AND
DISRUPTION PHENOTYPE.
STRAIN=cv. Columbia;
PubMed=20444695; DOI=10.1074/jbc.M110.105064;
Wei L., Guo J., Ouyang M., Sun X., Ma J., Chi W., Lu C., Zhang L.;
"LPA19, a Psb27 homolog in Arabidopsis thaliana, facilitates D1
protein precursor processing during PSII biogenesis.";
J. Biol. Chem. 285:21391-21398(2010).
-!- FUNCTION: Required, but not essential, for D1 (psbA) precursor
processing and thus correct photosystem II assembly (PSII).
{ECO:0000269|PubMed:20444695}.
-!- SUBUNIT: Interacts with the C-terminus of both the precursor and
mature form of D1. {ECO:0000269|PubMed:20444695}.
-!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid lumen
{ECO:0000269|PubMed:20444695}. Note=Associated with PSII on the
lumenal side of the thylakoid membrane.
-!- DISRUPTION PHENOTYPE: A high chlorophyll fluorescence mutant.
Impaired PSII function, maximum photochemical efficiency of PSII
was decreased, about 25% PSII in thylakoids; severely reduced
growth, decreased chlorophyll content. Inefficient processing of
the D1 precursor to the mature form.
{ECO:0000269|PubMed:20444695}.
-!- SIMILARITY: Belongs to the Psb27 family. {ECO:0000305}.
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EMBL; AC005106; AAF79740.1; -; Genomic_DNA.
EMBL; CP002684; AEE27833.1; -; Genomic_DNA.
EMBL; AF370242; AAK44057.1; -; mRNA.
EMBL; AY142580; AAN13149.1; -; mRNA.
EMBL; AK118288; BAC42906.1; -; mRNA.
PIR; G86188; G86188.
RefSeq; NP_563737.1; NM_100418.3.
UniGene; At.15340; -.
ProteinModelPortal; Q9ZVZ9; -.
BioGrid; 22282; 1.
STRING; 3702.AT1G05385.1; -.
PaxDb; Q9ZVZ9; -.
PRIDE; Q9ZVZ9; -.
EnsemblPlants; AT1G05385.1; AT1G05385.1; AT1G05385.
GeneID; 837040; -.
Gramene; AT1G05385.1; AT1G05385.1; AT1G05385.
KEGG; ath:AT1G05385; -.
Araport; AT1G05385; -.
TAIR; locus:505006101; AT1G05385.
eggNOG; ENOG410IYA6; Eukaryota.
eggNOG; ENOG4111U0T; LUCA.
HOGENOM; HOG000240416; -.
InParanoid; Q9ZVZ9; -.
OrthoDB; EOG09360N0F; -.
PhylomeDB; Q9ZVZ9; -.
PRO; PR:Q9ZVZ9; -.
Proteomes; UP000006548; Chromosome 1.
ExpressionAtlas; Q9ZVZ9; baseline and differential.
Genevisible; Q9ZVZ9; AT.
GO; GO:0009507; C:chloroplast; IDA:TAIR.
GO; GO:0009543; C:chloroplast thylakoid lumen; IDA:TAIR.
GO; GO:0010207; P:photosystem II assembly; IMP:TAIR.
Gene3D; 1.20.58.810; -; 1.
HAMAP; MF_01481; PSII_Psb27; 1.
InterPro; IPR025585; PSII_Pbs27.
InterPro; IPR038450; PSII_Pbs27_sf.
PANTHER; PTHR34041; PTHR34041; 1.
Pfam; PF13326; PSII_Pbs27; 1.
1: Evidence at protein level;
Chloroplast; Complete proteome; Plastid; Reference proteome;
Thylakoid; Transit peptide.
TRANSIT 1 ? Chloroplast. {ECO:0000305}.
TRANSIT ? 67 Thylakoid. {ECO:0000305}.
CHAIN 68 199 Photosystem II D1 precursor processing
protein PSB27-H2, chloroplastic.
/FTId=PRO_0000422926.
CONFLICT 122 122 K -> R (in Ref. 4; BAC42906).
{ECO:0000305}.
SEQUENCE 199 AA; 22267 MW; 5A36A68A408EB73C CRC64;
MGFLVAVMNF SPTLVHHHMK SKPQCQNEKL RQGQTSSLFD RRGFLKCVVG ASSFMATIEF
SGLQAQASEE KLDEGEGVVG AFKTLFDPNE RTKSGKELPK AYLKSAREVV KTMRESLKEN
PKDNAKFRRS ADAAKESIRD YLSNWRGQKT VAGEESYVEL ENVIRALAKF YSKAGPSAPL
PDEVKTEILD DLNKAEEFL


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