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Photosystem II reaction center protein Ycf12

 YCF12_THEEB             Reviewed;          46 AA.
Q8DJI1;
26-APR-2004, integrated into UniProtKB/Swiss-Prot.
01-MAR-2003, sequence version 1.
28-FEB-2018, entry version 81.
RecName: Full=Photosystem II reaction center protein Ycf12 {ECO:0000255|HAMAP-Rule:MF_01329};
Name=ycf12 {ECO:0000255|HAMAP-Rule:MF_01329};
OrderedLocusNames=tsr1242;
Thermosynechococcus elongatus (strain BP-1).
Bacteria; Cyanobacteria; Synechococcales; Synechococcaceae;
Thermosynechococcus.
NCBI_TaxID=197221;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=BP-1;
PubMed=12240834; DOI=10.1093/dnares/9.4.123;
Nakamura Y., Kaneko T., Sato S., Ikeuchi M., Katoh H., Sasamoto S.,
Watanabe A., Iriguchi M., Kawashima K., Kimura T., Kishida Y.,
Kiyokawa C., Kohara M., Matsumoto M., Matsuno A., Nakazaki N.,
Shimpo S., Sugimoto M., Takeuchi C., Yamada M., Tabata S.;
"Complete genome structure of the thermophilic cyanobacterium
Thermosynechococcus elongatus BP-1.";
DNA Res. 9:123-130(2002).
[2]
PROTEIN SEQUENCE OF 1-15, IDENTIFICATION IN PHOTOSYSTEM II, COFACTOR,
SUBUNIT, AND SUBCELLULAR LOCATION.
PubMed=17935689; DOI=10.1016/j.bbabio.2007.08.008;
Kashino Y., Takahashi T., Inoue-Kashino N., Ban A., Ikeda Y.,
Satoh K., Sugiura M.;
"Ycf12 is a core subunit in the photosystem II complex.";
Biochim. Biophys. Acta 1767:1269-1275(2007).
[3]
PROTEIN SEQUENCE OF 1-6, IDENTIFICATION IN PHOTOSYSTEM II, COFACTOR,
SUBUNIT, AND SUBCELLULAR LOCATION.
PubMed=17967798; DOI=10.1093/pcp/pcm148;
Iwai M., Suzuki T., Dohmae N., Inoue Y., Ikeuchi M.;
"Absence of the PsbZ subunit prevents association of PsbK and Ycf12
with the PSII complex in the thermophilic cyanobacterium
Thermosynechococcus elongatus BP-1.";
Plant Cell Physiol. 48:1758-1763(2007).
[4]
X-RAY CRYSTALLOGRAPHY (2.90 ANGSTROMS) IN PHOTOSYSTEM II, COFACTOR,
SUBUNIT, SUBCELLULAR LOCATION, FORMYLATION AT MET-1, MASS
SPECTROMETRY, AND TOPOLOGY.
STRAIN=BP-1;
PubMed=19219048; DOI=10.1038/nsmb.1559;
Guskov A., Kern J., Gabdulkhakov A., Broser M., Zouni A., Saenger W.;
"Cyanobacterial photosystem II at 2.9-A resolution and the role of
quinones, lipids, channels and chloride.";
Nat. Struct. Mol. Biol. 16:334-342(2009).
[5]
X-RAY CRYSTALLOGRAPHY (3.60 ANGSTROMS) IN PHOTOSYSTEM II, FUNCTION,
COFACTOR, SUBUNIT, SUBCELLULAR LOCATION, FORMYLATION AT MET-1, AND
MASS SPECTROMETRY.
STRAIN=BP-1;
PubMed=20558739; DOI=10.1074/jbc.M110.127589;
Broser M., Gabdulkhakov A., Kern J., Guskov A., Muh F., Saenger W.,
Zouni A.;
"Crystal structure of monomeric photosystem II from
Thermosynechococcus elongatus at 3.6 A resolution.";
J. Biol. Chem. 285:26255-26262(2010).
[6]
X-RAY CRYSTALLOGRAPHY (3.20 ANGSTROMS) IN PHOTOSYSTEM II, FUNCTION,
COFACTOR, SUBUNIT, AND SUBCELLULAR LOCATION.
PubMed=21367867; DOI=10.1074/jbc.M110.215970;
Broser M., Glockner C., Gabdulkhakov A., Guskov A., Buchta J.,
Kern J., Muh F., Dau H., Saenger W., Zouni A.;
"Structural basis of cyanobacterial photosystem II inhibition by the
herbicide terbutryn.";
J. Biol. Chem. 286:15964-15972(2011).
[7]
X-RAY CRYSTALLOGRAPHY (6.56 ANGSTROMS) IN PHOTOSYSTEM II, COFACTOR,
SUBUNIT, AND SUBCELLULAR LOCATION.
STRAIN=BP-1;
PubMed=22665786; DOI=10.1073/pnas.1204598109;
Kern J., Alonso-Mori R., Hellmich J., Tran R., Hattne J., Laksmono H.,
Glockner C., Echols N., Sierra R.G., Sellberg J., Lassalle-Kaiser B.,
Gildea R.J., Glatzel P., Grosse-Kunstleve R.W., Latimer M.J.,
McQueen T.A., DiFiore D., Fry A.R., Messerschmidt M., Miahnahri A.,
Schafer D.W., Seibert M.M., Sokaras D., Weng T.C., Zwart P.H.,
White W.E., Adams P.D., Bogan M.J., Boutet S., Williams G.J.,
Messinger J., Sauter N.K., Zouni A., Bergmann U., Yano J.,
Yachandra V.K.;
"Room temperature femtosecond X-ray diffraction of photosystem II
microcrystals.";
Proc. Natl. Acad. Sci. U.S.A. 109:9721-9726(2012).
[8]
X-RAY CRYSTALLOGRAPHY (5.70 ANGSTROMS) IN PHOTOSYSTEM II, COFACTOR,
SUBUNIT, AND SUBCELLULAR LOCATION.
STRAIN=BP-1;
PubMed=23413188; DOI=10.1126/science.1234273;
Kern J., Alonso-Mori R., Tran R., Hattne J., Gildea R.J., Echols N.,
Glockner C., Hellmich J., Laksmono H., Sierra R.G.,
Lassalle-Kaiser B., Koroidov S., Lampe A., Han G., Gul S., Difiore D.,
Milathianaki D., Fry A.R., Miahnahri A., Schafer D.W.,
Messerschmidt M., Seibert M.M., Koglin J.E., Sokaras D., Weng T.C.,
Sellberg J., Latimer M.J., Grosse-Kunstleve R.W., Zwart P.H.,
White W.E., Glatzel P., Adams P.D., Bogan M.J., Williams G.J.,
Boutet S., Messinger J., Zouni A., Sauter N.K., Yachandra V.K.,
Bergmann U., Yano J.;
"Simultaneous femtosecond X-ray spectroscopy and diffraction of
photosystem II at room temperature.";
Science 340:491-495(2013).
[9]
X-RAY CRYSTALLOGRAPHY (5.00 ANGSTROMS) OF 18-46 IN PHOTOSYSTEM II,
COFACTOR, SUBUNIT, AND SUBCELLULAR LOCATION.
STRAIN=BP-1;
PubMed=25043005; DOI=10.1038/nature13453;
Kupitz C., Basu S., Grotjohann I., Fromme R., Zatsepin N.A.,
Rendek K.N., Hunter M.S., Shoeman R.L., White T.A., Wang D., James D.,
Yang J.H., Cobb D.E., Reeder B., Sierra R.G., Liu H., Barty A.,
Aquila A.L., Deponte D., Kirian R.A., Bari S., Bergkamp J.J.,
Beyerlein K.R., Bogan M.J., Caleman C., Chao T.C., Conrad C.E.,
Davis K.M., Fleckenstein H., Galli L., Hau-Riege S.P., Kassemeyer S.,
Laksmono H., Liang M., Lomb L., Marchesini S., Martin A.V.,
Messerschmidt M., Milathianaki D., Nass K., Ros A., Roy-Chowdhury S.,
Schmidt K., Seibert M., Steinbrener J., Stellato F., Yan L., Yoon C.,
Moore T.A., Moore A.L., Pushkar Y., Williams G.J., Boutet S.,
Doak R.B., Weierstall U., Frank M., Chapman H.N., Spence J.C.,
Fromme P.;
"Serial time-resolved crystallography of photosystem II using a
femtosecond X-ray laser.";
Nature 513:261-265(2014).
[10]
X-RAY CRYSTALLOGRAPHY (4.50 ANGSTROMS) IN PHOTOSYSTEM II, FUNCTION,
COFACTOR, SUBUNIT, AND SUBCELLULAR LOCATION.
STRAIN=BP-1;
PubMed=25006873; DOI=10.1038/ncomms5371;
Kern J., Tran R., Alonso-Mori R., Koroidov S., Echols N., Hattne J.,
Ibrahim M., Gul S., Laksmono H., Sierra R.G., Gildea R.J., Han G.,
Hellmich J., Lassalle-Kaiser B., Chatterjee R., Brewster A.S.,
Stan C.A., Gloeckner C., Lampe A., DiFiore D., Milathianaki D.,
Fry A.R., Seibert M.M., Koglin J.E., Gallo E., Uhlig J., Sokaras D.,
Weng T.C., Zwart P.H., Skinner D.E., Bogan M.J., Messerschmidt M.,
Glatzel P., Williams G.J., Boutet S., Adams P.D., Zouni A.,
Messinger J., Sauter N.K., Bergmann U., Yano J., Yachandra V.K.;
"Taking snapshots of photosynthetic water oxidation using femtosecond
X-ray diffraction and spectroscopy.";
Nat. Commun. 5:4371-4371(2014).
-!- FUNCTION: A core subunit of photosystem II (PSII). PSII is a
light-driven water plastoquinone oxidoreductase, using light
energy to abstract electrons from H(2)O, generating a proton
gradient subsequently used for ATP formation.
{ECO:0000269|PubMed:20558739, ECO:0000269|PubMed:21367867,
ECO:0000269|PubMed:25006873}.
-!- COFACTOR:
Note=PSII binds multiple chlorophylls, carotenoids and specific
lipids. {ECO:0000269|PubMed:17935689, ECO:0000269|PubMed:17967798,
ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739,
ECO:0000269|PubMed:21367867, ECO:0000269|PubMed:22665786,
ECO:0000269|PubMed:23413188, ECO:0000269|PubMed:25006873,
ECO:0000269|PubMed:25043005};
-!- SUBUNIT: Cyanobacterial PSII is composed of 1 copy each of
membrane proteins PsbA, PsbB, PsbC, PsbD, PsbE, PsbF, PsbH, PsbI,
PsbJ, PsbK, PsbL, PsbM, PsbT, PsbX, PsbY, PsbZ, Ycf12, 3
peripheral proteins PsbO, PsbU, PsbV and a large number of
cofactors. It forms dimeric complexes.
{ECO:0000269|PubMed:17935689, ECO:0000269|PubMed:17967798,
ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739,
ECO:0000269|PubMed:21367867, ECO:0000269|PubMed:22665786,
ECO:0000269|PubMed:23413188, ECO:0000269|PubMed:25006873,
ECO:0000269|PubMed:25043005}.
-!- SUBCELLULAR LOCATION: Cellular thylakoid membrane
{ECO:0000255|HAMAP-Rule:MF_01329, ECO:0000269|PubMed:17935689,
ECO:0000269|PubMed:17967798, ECO:0000269|PubMed:19219048,
ECO:0000269|PubMed:20558739, ECO:0000269|PubMed:21367867,
ECO:0000269|PubMed:22665786, ECO:0000269|PubMed:23413188,
ECO:0000269|PubMed:25006873, ECO:0000269|PubMed:25043005}; Single-
pass membrane protein {ECO:0000255|HAMAP-Rule:MF_01329,
ECO:0000269|PubMed:17935689, ECO:0000269|PubMed:17967798,
ECO:0000269|PubMed:19219048, ECO:0000269|PubMed:20558739,
ECO:0000269|PubMed:21367867, ECO:0000269|PubMed:22665786,
ECO:0000269|PubMed:23413188, ECO:0000269|PubMed:25006873,
ECO:0000269|PubMed:25043005}.
-!- MASS SPECTROMETRY: Mass=5068; Mass_error=2; Method=MALDI; Range=1-
46; Evidence={ECO:0000269|PubMed:19219048};
-!- MASS SPECTROMETRY: Mass=5067; Method=MALDI; Range=1-46;
Evidence={ECO:0000269|PubMed:20558739};
-!- SIMILARITY: Belongs to the Ycf12 family. {ECO:0000255|HAMAP-
Rule:MF_01329}.
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EMBL; BA000039; BAC08794.1; -; Genomic_DNA.
RefSeq; NP_682032.1; NC_004113.1.
RefSeq; WP_011057084.1; NC_004113.1.
PDB; 3KZI; X-ray; 3.60 A; y=1-46.
PDB; 4FBY; X-ray; 6.56 A; m/y=1-46.
PDB; 4IXQ; X-ray; 5.70 A; g/y=1-46.
PDB; 4IXR; X-ray; 5.90 A; g/y=1-46.
PDB; 4PBU; X-ray; 5.00 A; Y/y=18-46.
PDB; 4PJ0; X-ray; 2.44 A; Y/y=1-46.
PDB; 4RVY; X-ray; 5.50 A; Y/y=18-46.
PDB; 4TNH; X-ray; 4.90 A; g/y=1-46.
PDB; 4TNI; X-ray; 4.60 A; g/y=1-46.
PDB; 4TNJ; X-ray; 4.50 A; g/y=1-46.
PDB; 4TNK; X-ray; 5.20 A; g/y=1-46.
PDB; 4V62; X-ray; 2.90 A; Ay/By=1-46.
PDB; 4V82; X-ray; 3.20 A; Ay/By=1-46.
PDB; 5E79; X-ray; 3.50 A; Y/y=18-46.
PDB; 5E7C; X-ray; 4.50 A; Y/y=18-46.
PDB; 5H2F; X-ray; 2.20 A; Y/y=18-46.
PDB; 5KAF; X-ray; 3.00 A; Y/y=1-46.
PDB; 5KAI; X-ray; 2.80 A; Y/y=1-46.
PDB; 5MX2; X-ray; 2.20 A; Y/y=1-46.
PDB; 5TIS; X-ray; 2.25 A; Y/y=1-46.
PDBsum; 3KZI; -.
PDBsum; 4FBY; -.
PDBsum; 4IXQ; -.
PDBsum; 4IXR; -.
PDBsum; 4PBU; -.
PDBsum; 4PJ0; -.
PDBsum; 4RVY; -.
PDBsum; 4TNH; -.
PDBsum; 4TNI; -.
PDBsum; 4TNJ; -.
PDBsum; 4TNK; -.
PDBsum; 4V62; -.
PDBsum; 4V82; -.
PDBsum; 5E79; -.
PDBsum; 5E7C; -.
PDBsum; 5H2F; -.
PDBsum; 5KAF; -.
PDBsum; 5KAI; -.
PDBsum; 5MX2; -.
PDBsum; 5TIS; -.
SMR; Q8DJI1; -.
DIP; DIP-48505N; -.
IntAct; Q8DJI1; 1.
STRING; 197221.tsr1242; -.
EnsemblBacteria; BAC08794; BAC08794; BAC08794.
GeneID; 1011818; -.
KEGG; tel:tsr1242; -.
BioCyc; TELO197221:G1G3I-1264-MONOMER; -.
EvolutionaryTrace; Q8DJI1; -.
Proteomes; UP000000440; Chromosome.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0009523; C:photosystem II; IEA:UniProtKB-KW.
GO; GO:0042651; C:thylakoid membrane; IEA:UniProtKB-SubCell.
GO; GO:0015979; P:photosynthesis; IEA:UniProtKB-KW.
HAMAP; MF_01329; PSII_Ycf12; 1.
InterPro; IPR010284; PSII_Ycf12_core-subunit.
Pfam; PF05969; PSII_Ycf12; 1.
1: Evidence at protein level;
3D-structure; Complete proteome; Direct protein sequencing;
Formylation; Membrane; Photosynthesis; Photosystem II;
Reference proteome; Thylakoid; Transmembrane; Transmembrane helix.
CHAIN 1 46 Photosystem II reaction center protein
Ycf12.
/FTId=PRO_0000059043.
TOPO_DOM 1 22 Lumenal. {ECO:0000269|PubMed:19219048}.
TRANSMEM 23 35 Helical. {ECO:0000255|HAMAP-
Rule:MF_01329,
ECO:0000269|PubMed:19219048}.
TOPO_DOM 36 46 Cytoplasmic.
{ECO:0000269|PubMed:19219048}.
MOD_RES 1 1 N-formylmethionine.
{ECO:0000269|PubMed:19219048,
ECO:0000269|PubMed:20558739}.
HELIX 19 41 {ECO:0000244|PDB:5H2F}.
SEQUENCE 46 AA; 5037 MW; 19DF1C3506E4C032 CRC64;
MGIFNGIIEF LSNINFEVIA QLTMIAMIGI AGPMIIFLLA VRRGNL


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