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Phytochrome

 Q9LRG8_ARMRU            Unreviewed;      1122 AA.
Q9LRG8;
01-OCT-2000, integrated into UniProtKB/TrEMBL.
01-OCT-2000, sequence version 1.
22-NOV-2017, entry version 105.
RecName: Full=Phytochrome {ECO:0000305|PIRNR:PIRNR000084};
Name=ArPHYA23 {ECO:0000303|EMBL:BAA99410.1};
Armoracia rusticana (Horseradish) (Armoracia laphatifolia).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Cardamineae;
Armoracia.
NCBI_TaxID=3704 {ECO:0000303|EMBL:BAA99410.1};
[1] {ECO:0000303|EMBL:BAA99410.1}
NUCLEOTIDE SEQUENCE.
TISSUE=Hairy root {ECO:0000303|EMBL:BAA99410.1};
Saitou T.;
"Genes for phytochrome A in horseradish: isolation of cDNAs and
analysis of expression during light-induced formation of adventitious
shoots from hairy roots.";
Submitted (JAN-2000) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Regulatory photoreceptor which exists in two forms that
are reversibly interconvertible by light: the Pr form that absorbs
maximally in the red region of the spectrum and the Pfr form that
absorbs maximally in the far-red region.
{ECO:0000305|PIRNR:PIRNR000084}.
-!- SUBUNIT: Homodimer. {ECO:0000305|PIRNR:PIRNR000084}.
-!- PTM: Contains one covalently linked phytochromobilin chromophore.
{ECO:0000305|PIRSR:PIRSR000084-50}.
-!- SIMILARITY: Belongs to the phytochrome family.
{ECO:0000305|PIRNR:PIRNR000084}.
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EMBL; AB036764; BAA99410.1; -; mRNA.
ProteinModelPortal; Q9LRG8; -.
GO; GO:0005622; C:intracellular; RCA:GOC.
GO; GO:0000155; F:phosphorelay sensor kinase activity; RCA:InterPro.
GO; GO:0009881; F:photoreceptor activity; RCA:UniProtKB-KW.
GO; GO:0042803; F:protein homodimerization activity; RCA:InterPro.
GO; GO:0009584; P:detection of visible light; RCA:InterPro.
GO; GO:0018298; P:protein-chromophore linkage; RCA:UniProtKB-KW.
GO; GO:0017006; P:protein-tetrapyrrole linkage; RCA:InterPro.
GO; GO:0009585; P:red, far-red light phototransduction; RCA:InterPro.
GO; GO:0006355; P:regulation of transcription, DNA-templated; RCA:UniProtKB-KW.
GO; GO:0006351; P:transcription, DNA-templated; RCA:UniProtKB-KW.
CDD; cd00075; HATPase_c; 1.
CDD; cd00082; HisKA; 1.
CDD; cd00130; PAS; 2.
Gene3D; 3.30.450.40; -; 1.
Gene3D; 3.30.565.10; -; 1.
InterPro; IPR003018; GAF.
InterPro; IPR029016; GAF-like_dom_sf.
InterPro; IPR003594; HATPase_C.
InterPro; IPR036890; HATPase_C_sf.
InterPro; IPR005467; His_kinase_dom.
InterPro; IPR003661; HisK_dim/P.
InterPro; IPR000014; PAS.
InterPro; IPR035965; PAS-like_dom_sf.
InterPro; IPR013654; PAS_2.
InterPro; IPR013767; PAS_fold.
InterPro; IPR016132; Phyto_chromo_attachment.
InterPro; IPR013516; Phyto_chromo_BS.
InterPro; IPR001294; Phytochrome.
InterPro; IPR012129; Phytochrome_A-E.
InterPro; IPR013515; Phytochrome_cen-reg.
Pfam; PF01590; GAF; 1.
Pfam; PF02518; HATPase_c; 1.
Pfam; PF00989; PAS; 2.
Pfam; PF08446; PAS_2; 1.
Pfam; PF00360; PHY; 1.
PIRSF; PIRSF000084; Phytochrome; 1.
PRINTS; PR01033; PHYTOCHROME.
SMART; SM00065; GAF; 1.
SMART; SM00387; HATPase_c; 1.
SMART; SM00388; HisKA; 1.
SMART; SM00091; PAS; 2.
SUPFAM; SSF55781; SSF55781; 2.
SUPFAM; SSF55785; SSF55785; 3.
SUPFAM; SSF55874; SSF55874; 1.
TIGRFAMs; TIGR00229; sensory_box; 1.
PROSITE; PS50109; HIS_KIN; 1.
PROSITE; PS50112; PAS; 2.
PROSITE; PS00245; PHYTOCHROME_1; 1.
PROSITE; PS50046; PHYTOCHROME_2; 1.
2: Evidence at transcript level;
Chromophore {ECO:0000305|PIRNR:PIRNR000084};
Photoreceptor protein {ECO:0000305|PIRNR:PIRNR000084};
Receptor {ECO:0000305|PIRNR:PIRNR000084};
Sensory transduction {ECO:0000305|PIRNR:PIRNR000084};
Transcription {ECO:0000305|PIRNR:PIRNR000084};
Transcription regulation {ECO:0000305|PIRNR:PIRNR000084}.
DOMAIN 218 392 PHYTOCHROME_2.
{ECO:0000313|PROSITE:PS50046}.
DOMAIN 618 688 PAS. {ECO:0000313|PROSITE:PS50112}.
DOMAIN 748 803 PAS. {ECO:0000313|PROSITE:PS50112}.
DOMAIN 902 1119 Histidine kinase.
{ECO:0000313|PROSITE:PS50109}.
BINDING 323 323 Phytochromobilin chromophore (covalent;
via 1 link).
{ECO:0000305|PIRSR:PIRSR000084-50}.
SEQUENCE 1122 AA; 124291 MW; 80621FB242DA01B1 CRC64;
MSGSRPSQSS EGSRRSRHSA RIIAQTTVDA KLHADFEESG SSFDYSTSVR VTGPVVENQP
PRSDKVTTTY LHHIQKGKLI QPFGCLLALD EKTFKVIAYS ENAPELLTMA SHAVPSVGEH
PVLGIGTDIR SLFTAPSASA LQKALGFGDV SLLNPILVHC KTSAKPFYAI VHRVTGSIIV
DFEPVKPYEV PMTAAGALQS YKLAAKAITR LQSLPSGSME RLCDTMVQEV FELTGYDRVM
AYKFHEDDHG EVVSEVTKPG LEPYLGLHYP ATDIPQAARF LFMKNKVRMI VDCNAKHARV
LQDEKLSFDL TLCGSTLRAP HSCHLQYMAN MDSIASLVMA VVVNEEDGEG DAPDSTTQPQ
KRKRLWGLVV CHNTTPRFVP FPLRYACEFL AQVFAIHVNK EVELENQIVE KNILRTQTLL
CDMLMRDAPL GIVSQSPNIM DLVKCDGAAL LYKDKIWKLG TTPSELHLQE IASWLYEYHT
DSTGLSTDSL HDAGFPKALS LGDAVCGMAA VRISLKDMIF WFRSHTAGEV RWGGAKHNPD
DRDDARRMHP RSSFKAFLEV VKTRSLPWKD YEMDAIHSLQ LILRNAFKDG ESTDVNTNII
HSKLNDLKID GIQELEAVTS EMVRLIETAT VPILAVDSDG LVNGWNTKIA ELTGLPVDEA
IGKHLLTLVE DSSVEIVKRM LENALEGTEE QNVQFEIKTH QSRADAGTIS LAVNACASRD
LHENVVGVCF VAHDLTGQKT VMDKFTRIEG DYKAIIQNPN PLIPPIFGTD EFGWCTEWNP
AMSKLTGLKR EEVIDKMLLG EVFGTQKSCC RLKNQEAFVN LGIVLNGAVT SQESEKVSFA
FFTRGGKYIE CLLCVSKKLD REGVVTGVFC FLQLASHELQ QALHVQRLAE RTALKRLKAI
AYIKRQIRNP LSGVMFTREM IEGTELGPEQ RQILHTSALC QEQLSKVLDD SDLESIIEGC
LDLEMKEFSL NEVLTASTSQ VMMKSNGKSV RITNETGEEV MSDTLYGDSI RLQQVLADFM
LMSVNFTPSG GQLTVTASLR KDQPGRSVHL AYLEIRLTHT GAGIPEFLLN QMFGTEEDVS
EEGLSLMVSR KLVKLMNGDV QYLRQAGKSS FIISAELAAA NK


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