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Polyadenylate-binding protein (PABP)

 E9AFX7_LEIMA            Unreviewed;       560 AA.
E9AFX7;
05-APR-2011, integrated into UniProtKB/TrEMBL.
05-APR-2011, sequence version 1.
10-OCT-2018, entry version 50.
RecName: Full=Polyadenylate-binding protein {ECO:0000256|RuleBase:RU362004};
Short=PABP {ECO:0000256|RuleBase:RU362004};
Name=PABP1 {ECO:0000313|EMBL:CBZ13132.1};
ORFNames=LMJF_35_5040 {ECO:0000313|EMBL:CBZ13132.1};
Leishmania major.
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae;
Leishmaniinae; Leishmania.
NCBI_TaxID=5664 {ECO:0000313|Proteomes:UP000000542};
[1] {ECO:0000313|EMBL:CBZ13132.1, ECO:0000313|Proteomes:UP000000542}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=MHOM/IL/81/Friedlin {ECO:0000313|Proteomes:UP000000542};
PubMed=16020728; DOI=10.1126/science.1112680;
Ivens A.C., Peacock C.S., Worthey E.A., Murphy L., Aggarwal G.,
Berriman M., Sisk E., Rajandream M.A., Adlem E., Aert R., Anupama A.,
Apostolou Z., Attipoe P., Bason N., Bauser C., Beck A., Beverley S.M.,
Bianchettin G., Borzym K., Bothe G., Bruschi C.V., Collins M.,
Cadag E., Ciarloni L., Clayton C., Coulson R.M., Cronin A., Cruz A.K.,
Davies R.M., De Gaudenzi J., Dobson D.E., Duesterhoeft A.,
Fazelina G., Fosker N., Frasch A.C., Fraser A., Fuchs M., Gabel C.,
Goble A., Goffeau A., Harris D., Hertz-Fowler C., Hilbert H., Horn D.,
Huang Y., Klages S., Knights A., Kube M., Larke N., Litvin L.,
Lord A., Louie T., Marra M., Masuy D., Matthews K., Michaeli S.,
Mottram J.C., Muller-Auer S., Munden H., Nelson S., Norbertczak H.,
Oliver K., O'neil S., Pentony M., Pohl T.M., Price C., Purnelle B.,
Quail M.A., Rabbinowitsch E., Reinhardt R., Rieger M., Rinta J.,
Robben J., Robertson L., Ruiz J.C., Rutter S., Saunders D.,
Schafer M., Schein J., Schwartz D.C., Seeger K., Seyler A., Sharp S.,
Shin H., Sivam D., Squares R., Squares S., Tosato V., Vogt C.,
Volckaert G., Wambutt R., Warren T., Wedler H., Woodward J., Zhou S.,
Zimmermann W., Smith D.F., Blackwell J.M., Stuart K.D., Barrell B.,
Myler P.J.;
"The genome of the kinetoplastid parasite, Leishmania major.";
Science 309:436-442(2005).
[2] {ECO:0000313|EMBL:CBZ13132.1, ECO:0000313|Proteomes:UP000000542}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=MHOM/IL/81/Friedlin {ECO:0000313|Proteomes:UP000000542};
PubMed=22038252; DOI=10.1101/gr.122945.111;
Rogers M.B., Hilley J.D., Dickens N.J., Wilkes J., Bates P.A.,
Depledge D.P., Harris D., Her Y., Herzyk P., Imamura H., Otto T.D.,
Sanders M., Seeger K., Dujardin J.C., Berriman M., Smith D.F.,
Hertz-Fowler C., Mottram J.C.;
"Chromosome and gene copy number variation allow major structural
change between species and strains of Leishmania.";
Genome Res. 21:2129-2142(2011).
-!- FUNCTION: Binds the poly(A) tail of mRNA.
{ECO:0000256|RuleBase:RU362004}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|RuleBase:RU362004}.
-!- SIMILARITY: Belongs to the polyadenylate-binding protein type-1
family. {ECO:0000256|RuleBase:RU362004}.
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EMBL; FR796431; CBZ13132.1; -; Genomic_DNA.
RefSeq; XP_003722897.1; XM_003722849.1.
ProteinModelPortal; E9AFX7; -.
STRING; 5664.LmjF.35.5040; -.
EnsemblProtists; CBZ13132; CBZ13132; LMJF_35_5040.
GeneDB; LmjF.35.5040:pep; -.
GeneID; 12980654; -.
KEGG; lma:LMJF_35_5040; -.
EuPathDB; TriTrypDB:LmjF.35.5040; -.
eggNOG; KOG0123; Eukaryota.
eggNOG; ENOG410XR5X; LUCA.
HOGENOM; HOG000217922; -.
InParanoid; E9AFX7; -.
KO; K13126; -.
OMA; KKVYVGH; -.
Proteomes; UP000000542; Chromosome 35.
GO; GO:0005737; C:cytoplasm; IDA:GeneDB.
GO; GO:0010494; C:cytoplasmic stress granule; ISO:GeneDB.
GO; GO:0005634; C:nucleus; IDA:GeneDB.
GO; GO:0008190; F:eukaryotic initiation factor 4E binding; IPI:GeneDB.
GO; GO:0031370; F:eukaryotic initiation factor 4G binding; IDA:GeneDB.
GO; GO:0008143; F:poly(A) binding; IDA:GeneDB.
GO; GO:0006378; P:mRNA polyadenylation; IDA:GeneDB.
Gene3D; 3.30.70.330; -; 4.
InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
InterPro; IPR036053; PABP-dom.
InterPro; IPR006515; PABP_1234.
InterPro; IPR002004; PABP_HYD.
InterPro; IPR035979; RBD_domain_sf.
InterPro; IPR000504; RRM_dom.
InterPro; IPR003954; RRM_dom_euk.
Pfam; PF00658; PABP; 1.
Pfam; PF00076; RRM_1; 4.
SMART; SM00517; PolyA; 1.
SMART; SM00360; RRM; 4.
SMART; SM00361; RRM_1; 3.
SUPFAM; SSF54928; SSF54928; 2.
SUPFAM; SSF63570; SSF63570; 2.
TIGRFAMs; TIGR01628; PABP-1234; 1.
PROSITE; PS51309; PABC; 1.
PROSITE; PS50102; RRM; 4.
3: Inferred from homology;
Complete proteome {ECO:0000313|Proteomes:UP000000542};
Cytoplasm {ECO:0000256|RuleBase:RU362004};
Reference proteome {ECO:0000313|Proteomes:UP000000542};
Repeat {ECO:0000256|SAAS:SAAS00454674};
RNA-binding {ECO:0000256|PROSITE-ProRule:PRU00176,
ECO:0000256|RuleBase:RU362004, ECO:0000256|SAAS:SAAS00572889}.
DOMAIN 25 103 RRM. {ECO:0000259|PROSITE:PS50102}.
DOMAIN 113 189 RRM. {ECO:0000259|PROSITE:PS50102}.
DOMAIN 207 287 RRM. {ECO:0000259|PROSITE:PS50102}.
DOMAIN 307 384 RRM. {ECO:0000259|PROSITE:PS50102}.
DOMAIN 482 559 PABC. {ECO:0000259|PROSITE:PS51309}.
SEQUENCE 560 AA; 62665 MW; 783870DC7B766901 CRC64;
MAAAVQEAAA PVAHQPQMDK PMQIASIYVG DLDATINEPQ LVELFKPFGT ILNVRVCRDI
ITQRSLGYGY VNFDNHDSAE KAIESMNFKR VGDKCVRLMW QQRDPALRYS GNGNVFVKNL
EKDVDSKSLH DIFTKFGSIL SCKVMQDEEG KSRGYGFVHF KDETSAKDAI VKMNGAADHA
SEDKKALYVA NFIRRNARLA ALVANFTNVY IKQVLPTVNK DVIEKFFAKF GGITSAAACK
DKSGRVFAFC NFEKHDDAVK AVEAMHDHHI DGITAPGEKL YVQRAQPRSE RLIALRQKYM
QHQALGNNLY VRNFDPEFTG ADLLELFKEY GEVKSCRVMV SESGVSRGFG FVSFSNADEA
NAALREMNGR MLNGKPLIVN IAQRRDQRYT MLRLQFQQRL QMMMRQMHQP MPFVGSQGRP
MRGRGGRQQL GGRAQGHPMP MPSPQQPQAP AQPQGFATPS AVGFVQATPK HSPGDVPETP
PLPPITPQEL ESMSPQEQRA ALGDRLFLKV YEIAPELAPK ITGMFLEMKP KEAYELLNDQ
KRLEERVTEA LCVLKAHQTA


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