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Polyadenylate-binding protein 5 (PABP-5) (Poly(A)-binding protein 5)

 PABP5_HUMAN             Reviewed;         382 AA.
Q96DU9; A8K240; Q5JQF4; Q6P529; Q9UFE5;
01-FEB-2003, integrated into UniProtKB/Swiss-Prot.
01-DEC-2001, sequence version 1.
25-OCT-2017, entry version 126.
RecName: Full=Polyadenylate-binding protein 5;
Short=PABP-5;
Short=Poly(A)-binding protein 5;
Name=PABPC5; Synonyms=PABP5;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
TISSUE=Brain;
PubMed=11374897; DOI=10.1006/geno.2001.6530;
Blanco P., Sargent C.A., Boucher C.A., Howell G., Ross M.,
Affara N.A.;
"A novel poly(A)-binding protein gene (PABPC5) maps to an X-specific
subinterval in the Xq21.3/Yp11.2 homology block of the human sex
chromosomes.";
Genomics 74:1-11(2001).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
TISSUE=Subthalamic nucleus;
PubMed=14702039; DOI=10.1038/ng1285;
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human
cDNAs.";
Nat. Genet. 36:40-45(2004).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=15772651; DOI=10.1038/nature03440;
Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D.,
Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A.,
Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G.,
Jones M.C., Hurles M.E., Andrews T.D., Scott C.E., Searle S.,
Ramser J., Whittaker A., Deadman R., Carter N.P., Hunt S.E., Chen R.,
Cree A., Gunaratne P., Havlak P., Hodgson A., Metzker M.L.,
Richards S., Scott G., Steffen D., Sodergren E., Wheeler D.A.,
Worley K.C., Ainscough R., Ambrose K.D., Ansari-Lari M.A., Aradhya S.,
Ashwell R.I., Babbage A.K., Bagguley C.L., Ballabio A., Banerjee R.,
Barker G.E., Barlow K.F., Barrett I.P., Bates K.N., Beare D.M.,
Beasley H., Beasley O., Beck A., Bethel G., Blechschmidt K., Brady N.,
Bray-Allen S., Bridgeman A.M., Brown A.J., Brown M.J., Bonnin D.,
Bruford E.A., Buhay C., Burch P., Burford D., Burgess J., Burrill W.,
Burton J., Bye J.M., Carder C., Carrel L., Chako J., Chapman J.C.,
Chavez D., Chen E., Chen G., Chen Y., Chen Z., Chinault C.,
Ciccodicola A., Clark S.Y., Clarke G., Clee C.M., Clegg S.,
Clerc-Blankenburg K., Clifford K., Cobley V., Cole C.G., Conquer J.S.,
Corby N., Connor R.E., David R., Davies J., Davis C., Davis J.,
Delgado O., Deshazo D., Dhami P., Ding Y., Dinh H., Dodsworth S.,
Draper H., Dugan-Rocha S., Dunham A., Dunn M., Durbin K.J., Dutta I.,
Eades T., Ellwood M., Emery-Cohen A., Errington H., Evans K.L.,
Faulkner L., Francis F., Frankland J., Fraser A.E., Galgoczy P.,
Gilbert J., Gill R., Gloeckner G., Gregory S.G., Gribble S.,
Griffiths C., Grocock R., Gu Y., Gwilliam R., Hamilton C., Hart E.A.,
Hawes A., Heath P.D., Heitmann K., Hennig S., Hernandez J.,
Hinzmann B., Ho S., Hoffs M., Howden P.J., Huckle E.J., Hume J.,
Hunt P.J., Hunt A.R., Isherwood J., Jacob L., Johnson D., Jones S.,
de Jong P.J., Joseph S.S., Keenan S., Kelly S., Kershaw J.K., Khan Z.,
Kioschis P., Klages S., Knights A.J., Kosiura A., Kovar-Smith C.,
Laird G.K., Langford C., Lawlor S., Leversha M., Lewis L., Liu W.,
Lloyd C., Lloyd D.M., Loulseged H., Loveland J.E., Lovell J.D.,
Lozado R., Lu J., Lyne R., Ma J., Maheshwari M., Matthews L.H.,
McDowall J., McLaren S., McMurray A., Meidl P., Meitinger T.,
Milne S., Miner G., Mistry S.L., Morgan M., Morris S., Mueller I.,
Mullikin J.C., Nguyen N., Nordsiek G., Nyakatura G., O'dell C.N.,
Okwuonu G., Palmer S., Pandian R., Parker D., Parrish J.,
Pasternak S., Patel D., Pearce A.V., Pearson D.M., Pelan S.E.,
Perez L., Porter K.M., Ramsey Y., Reichwald K., Rhodes S.,
Ridler K.A., Schlessinger D., Schueler M.G., Sehra H.K.,
Shaw-Smith C., Shen H., Sheridan E.M., Shownkeen R., Skuce C.D.,
Smith M.L., Sotheran E.C., Steingruber H.E., Steward C.A., Storey R.,
Swann R.M., Swarbreck D., Tabor P.E., Taudien S., Taylor T.,
Teague B., Thomas K., Thorpe A., Timms K., Tracey A., Trevanion S.,
Tromans A.C., d'Urso M., Verduzco D., Villasana D., Waldron L.,
Wall M., Wang Q., Warren J., Warry G.L., Wei X., West A.,
Whitehead S.L., Whiteley M.N., Wilkinson J.E., Willey D.L.,
Williams G., Williams L., Williamson A., Williamson H., Wilming L.,
Woodmansey R.L., Wray P.W., Yen J., Zhang J., Zhou J., Zoghbi H.,
Zorilla S., Buck D., Reinhardt R., Poustka A., Rosenthal A.,
Lehrach H., Meindl A., Minx P.J., Hillier L.W., Willard H.F.,
Wilson R.K., Waterston R.H., Rice C.M., Vaudin M., Coulson A.,
Nelson D.L., Weinstock G., Sulston J.E., Durbin R.M., Hubbard T.,
Gibbs R.A., Beck S., Rogers J., Bentley D.R.;
"The DNA sequence of the human X chromosome.";
Nature 434:325-337(2005).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
Venter J.C.;
Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 16-382.
TISSUE=Testis;
PubMed=17974005; DOI=10.1186/1471-2164-8-399;
Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U.,
Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H.,
Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K.,
Ottenwaelder B., Poustka A., Wiemann S., Schupp I.;
"The full-ORF clone resource of the German cDNA consortium.";
BMC Genomics 8:399-399(2007).
[7]
ALTERNATIVE INITIATION (ISOFORM 2), AND SUBCELLULAR LOCATION (ISOFORM
2).
PubMed=23275553; DOI=10.1093/nar/gks1347;
Kazak L., Reyes A., Duncan A.L., Rorbach J., Wood S.R., Brea-Calvo G.,
Gammage P.A., Robinson A.J., Minczuk M., Holt I.J.;
"Alternative translation initiation augments the human mitochondrial
proteome.";
Nucleic Acids Res. 41:2354-2369(2013).
-!- FUNCTION: Binds the poly(A) tail of mRNA. May be involved in
cytoplasmic regulatory processes of mRNA metabolism. Can probably
bind to cytoplasmic RNA sequences other than poly(A) in vivo (By
similarity). {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Isoform 2: Mitochondrion matrix
{ECO:0000269|PubMed:23275553}. Note=Co-fractionates with mtDNA and
co-immunoprecipitates with the mitochondrial poly(A) polymerase.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative initiation; Named isoforms=2;
Name=1;
IsoId=Q96DU9-1; Sequence=Displayed;
Name=2;
IsoId=Q96DU9-2; Sequence=VSP_047456;
-!- TISSUE SPECIFICITY: Expressed in fetal brain and in a range of
adult tissues.
-----------------------------------------------------------------------
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EMBL; AJ278963; CAC42826.1; -; Genomic_DNA.
EMBL; AK290105; BAF82794.1; -; mRNA.
EMBL; AL662874; CAI41475.1; -; Genomic_DNA.
EMBL; CH471115; EAX02776.1; -; Genomic_DNA.
EMBL; BC063113; AAH63113.1; -; mRNA.
EMBL; AL122118; CAB59276.1; -; mRNA.
CCDS; CCDS14460.1; -. [Q96DU9-1]
PIR; T34543; T34543.
RefSeq; NP_543022.1; NM_080832.2. [Q96DU9-1]
UniGene; Hs.246590; -.
ProteinModelPortal; Q96DU9; -.
SMR; Q96DU9; -.
BioGrid; 126753; 2.
IntAct; Q96DU9; 3.
STRING; 9606.ENSP00000308012; -.
iPTMnet; Q96DU9; -.
PhosphoSitePlus; Q96DU9; -.
BioMuta; PABPC5; -.
DMDM; 28201851; -.
EPD; Q96DU9; -.
MaxQB; Q96DU9; -.
PaxDb; Q96DU9; -.
PeptideAtlas; Q96DU9; -.
PRIDE; Q96DU9; -.
DNASU; 140886; -.
Ensembl; ENST00000312600; ENSP00000308012; ENSG00000174740. [Q96DU9-1]
GeneID; 140886; -.
KEGG; hsa:140886; -.
UCSC; uc004efg.4; human. [Q96DU9-1]
CTD; 140886; -.
EuPathDB; HostDB:ENSG00000174740.7; -.
GeneCards; PABPC5; -.
HGNC; HGNC:13629; PABPC5.
HPA; HPA000164; -.
HPA; HPA000165; -.
MIM; 300407; gene.
neXtProt; NX_Q96DU9; -.
OpenTargets; ENSG00000174740; -.
PharmGKB; PA32884; -.
eggNOG; KOG0123; Eukaryota.
eggNOG; ENOG410XR5X; LUCA.
GeneTree; ENSGT00760000118913; -.
HOGENOM; HOG000217922; -.
HOVERGEN; HBG002295; -.
InParanoid; Q96DU9; -.
KO; K13126; -.
OMA; FSEYGPT; -.
OrthoDB; EOG091G03ZE; -.
PhylomeDB; Q96DU9; -.
TreeFam; TF300458; -.
GenomeRNAi; 140886; -.
PRO; PR:Q96DU9; -.
Proteomes; UP000005640; Chromosome X.
Bgee; ENSG00000174740; -.
CleanEx; HS_PABPC5; -.
ExpressionAtlas; Q96DU9; baseline and differential.
Genevisible; Q96DU9; HS.
GO; GO:0005759; C:mitochondrial matrix; IEA:UniProtKB-SubCell.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
InterPro; IPR006515; PABP_1234.
InterPro; IPR035979; RBD_domain_sf.
InterPro; IPR000504; RRM_dom.
InterPro; IPR003954; RRM_dom_euk.
Pfam; PF00076; RRM_1; 4.
SMART; SM00360; RRM; 4.
SMART; SM00361; RRM_1; 3.
SUPFAM; SSF54928; SSF54928; 2.
TIGRFAMs; TIGR01628; PABP-1234; 1.
PROSITE; PS50102; RRM; 4.
2: Evidence at transcript level;
Alternative initiation; Complete proteome; Cytoplasm; Mitochondrion;
Polymorphism; Reference proteome; Repeat; RNA-binding.
CHAIN 1 382 Polyadenylate-binding protein 5.
/FTId=PRO_0000081705.
DOMAIN 18 96 RRM 1. {ECO:0000255|PROSITE-
ProRule:PRU00176}.
DOMAIN 106 182 RRM 2. {ECO:0000255|PROSITE-
ProRule:PRU00176}.
DOMAIN 199 276 RRM 3. {ECO:0000255|PROSITE-
ProRule:PRU00176}.
DOMAIN 302 378 RRM 4. {ECO:0000255|PROSITE-
ProRule:PRU00176}.
VAR_SEQ 1 32 Missing (in isoform 2). {ECO:0000305}.
/FTId=VSP_047456.
VARIANT 314 314 N -> S (in dbSNP:rs7050077).
/FTId=VAR_054049.
SEQUENCE 382 AA; 43331 MW; 23B34751780C602B CRC64;
MGSGEPNPAG KKKKYLKAAL YVGDLDPDVT EDMLYKKFRP AGPLRFTRIC RDPVTRSPLG
YGYVNFRFPA DAEWALNTMN FDLINGKPFR LMWSQPDDRL RKSGVGNIFI KNLDKSIDNR
ALFYLFSAFG NILSCKVVCD DNGSKGYAYV HFDSLAAANR AIWHMNGVRL NNRQVYVGRF
KFPEERAAEV RTRDRATFTN VFVKNIGDDI DDEKLKELFC EYGPTESVKV IRDASGKSKG
FGFVRYETHE AAQKAVLDLH GKSIDGKVLY VGRAQKKIER LAELRRRFER LRLKEKSRPP
GVPIYIKNLD ETINDEKLKE EFSSFGSISR AKVMMEVGQG KGFGVVCFSS FEEATKAVDE
MNGRIVGSKP LHVTLGQARR RC


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