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Polyhomeotic distal, isoform A

 Q9W523_DROME            Unreviewed;      1537 AA.
Q9W523;
01-MAY-2000, integrated into UniProtKB/TrEMBL.
01-OCT-2002, sequence version 3.
22-NOV-2017, entry version 138.
SubName: Full=Polyhomeotic distal, isoform A {ECO:0000313|EMBL:AAF45726.3};
Name=ph-d {ECO:0000313|EMBL:AAF45726.3,
ECO:0000313|FlyBase:FBgn0004860};
Synonyms=Dmel\CG3895 {ECO:0000313|EMBL:AAF45726.3},
DROZFP {ECO:0000313|EMBL:AAF45726.3},
EG:BACN25G24.3 {ECO:0000313|EMBL:AAF45726.3},
PH {ECO:0000313|EMBL:AAF45726.3}, Ph {ECO:0000313|EMBL:AAF45726.3},
ph {ECO:0000313|EMBL:AAF45726.3}, PH-d {ECO:0000313|EMBL:AAF45726.3},
Ph-d {ECO:0000313|EMBL:AAF45726.3},
ph-D {ECO:0000313|EMBL:AAF45726.3},
ph[D] {ECO:0000313|EMBL:AAF45726.3},
ph[d] {ECO:0000313|EMBL:AAF45726.3},
PHD {ECO:0000313|EMBL:AAF45726.3}, PhD {ECO:0000313|EMBL:AAF45726.3},
phd {ECO:0000313|EMBL:AAF45726.3}, phm {ECO:0000313|EMBL:AAF45726.3};
ORFNames=CG3895 {ECO:0000313|EMBL:AAF45726.3,
ECO:0000313|FlyBase:FBgn0004860},
Dmel_CG3895 {ECO:0000313|EMBL:AAF45726.3};
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227 {ECO:0000313|EMBL:AAF45726.3, ECO:0000313|Proteomes:UP000000803};
[1] {ECO:0000313|EMBL:AAF45726.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.H., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Gabor G.L.,
Abril J.F., Agbayani A., An H.J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., WoodageT, Worley K.C., Wu D., Yang S., Yao Q.A., Ye J.,
Yeh R.F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S., Zhu X., Smith H.O.,
Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2] {ECO:0000313|EMBL:AAF45726.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537568;
Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A.,
Patel S., Adams M., Champe M., Dugan S.P., Frise E., Hodgson A.,
George R.A., Hoskins R.A., Laverty T., Muzny D.M., Nelson C.R.,
Pacleb J.M., Park S., Pfeiffer B.D., Richards S., Sodergren E.J.,
Svirskas R., Tabor P.E., Wan K., Stapleton M., Sutton G.G., Venter C.,
Weinstock G., Scherer S.E., Myers E.W., Gibbs R.A., Rubin G.M.;
"Finishing a whole-genome shotgun: release 3 of the Drosophila
melanogaster euchromatic genome sequence.";
Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002).
[3] {ECO:0000313|EMBL:AAF45726.3, ECO:0000313|Proteomes:UP000000803}
GENOME REANNOTATION.
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfied E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4] {ECO:0000313|EMBL:AAF45726.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537573;
Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J., Svirskas R.,
Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M.,
Ashburner M., Celniker S.E.;
"The transposable elements of the Drosophila melanogaster euchromatin:
a genomics perspective.";
Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002).
[5] {ECO:0000313|EMBL:AAF45726.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=12537574;
Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A.,
Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G.,
Yasuhara J.C., Wakimoto B.T., Myers E.W., Celniker S.E., Rubin G.M.,
Karpen G.H.;
"Heterochromatic sequences in a Drosophila whole-genome shotgun
assembly.";
Genome Biol. 3:RESEARCH0085-RESEARCH0085(2002).
[6] {ECO:0000313|EMBL:AAF45726.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=16110336; DOI=10.1371/journal.pcbi.0010022;
Quesneville H., Bergman C.M., Andrieu O., Autard D., Nouaud D.,
Ashburner M., Anxolabehere D.;
"Combined evidence annotation of transposable elements in genome
sequences.";
PLoS Comput. Biol. 1:166-175(2005).
[7] {ECO:0000313|EMBL:AAF45726.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569856; DOI=10.1126/science.1139815;
Smith C.D., Shu S., Mungall C.J., Karpen G.H.;
"The Release 5.1 annotation of Drosophila melanogaster
heterochromatin.";
Science 316:1586-1591(2007).
[8] {ECO:0000313|EMBL:AAF45726.3, ECO:0000313|Proteomes:UP000000803}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley {ECO:0000313|Proteomes:UP000000803};
PubMed=17569867; DOI=10.1126/science.1139816;
Hoskins R.A., Carlson J.W., Kennedy C., Acevedo D., Evans-Holm M.,
Frise E., Wan K.H., Park S., Mendez-Lago M., Rossi F., Villasante A.,
Dimitri P., Karpen G.H., Celniker S.E.;
"Sequence finishing and mapping of Drosophila melanogaster
heterochromatin.";
Science 316:1625-1628(2007).
-----------------------------------------------------------------------
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EMBL; AE014298; AAF45726.3; -; Genomic_DNA.
RefSeq; NP_524794.2; NM_080055.3.
ProteinModelPortal; Q9W523; -.
SMR; Q9W523; -.
IntAct; Q9W523; 1.
MINT; MINT-320165; -.
STRING; 7227.FBpp0070417; -.
PaxDb; Q9W523; -.
PRIDE; Q9W523; -.
EnsemblMetazoa; FBtr0070433; FBpp0070417; FBgn0004860.
GeneID; 44889; -.
UCSC; CG3895-RA; d. melanogaster.
CTD; 44889; -.
FlyBase; FBgn0004860; ph-d.
eggNOG; ENOG410IDZN; Eukaryota.
eggNOG; ENOG4111F0Y; LUCA.
GeneTree; ENSGT00550000074459; -.
InParanoid; Q9W523; -.
OMA; CAKSKKR; -.
OrthoDB; EOG091G0WL3; -.
PhylomeDB; Q9W523; -.
Reactome; R-DME-2559580; Oxidative Stress Induced Senescence.
Reactome; R-DME-3108214; SUMOylation of DNA damage response and repair proteins.
Reactome; R-DME-4570464; SUMOylation of RNA binding proteins.
Reactome; R-DME-8943724; Regulation of PTEN gene transcription.
Reactome; R-DME-8953750; Transcriptional Regulation by E2F6.
ChiTaRS; ph-d; fly.
GenomeRNAi; 44889; -.
Proteomes; UP000000803; Chromosome X.
Bgee; FBgn0004860; -.
Genevisible; Q9W523; DM.
GO; GO:0000785; C:chromatin; NAS:FlyBase.
GO; GO:0005730; C:nucleolus; IDA:FlyBase.
GO; GO:0005634; C:nucleus; IDA:FlyBase.
GO; GO:0035102; C:PRC1 complex; IDA:FlyBase.
GO; GO:0051087; F:chaperone binding; IDA:FlyBase.
GO; GO:0003682; F:chromatin binding; IDA:FlyBase.
GO; GO:0001047; F:core promoter binding; IDA:FlyBase.
GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
GO; GO:0006342; P:chromatin silencing; NAS:FlyBase.
GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IMP:FlyBase.
GO; GO:0035186; P:syncytial blastoderm mitotic cell cycle; IMP:FlyBase.
Gene3D; 1.10.418.10; -; 1.
Gene3D; 2.130.10.10; -; 1.
InterPro; IPR036872; Calponin-like_dom_sf.
InterPro; IPR001660; SAM.
InterPro; IPR013761; SAM/pointed_sf.
InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
InterPro; IPR012313; Znf_FCS.
Pfam; PF00536; SAM_1; 1.
SMART; SM00454; SAM; 1.
SUPFAM; SSF47769; SSF47769; 1.
PROSITE; PS50105; SAM_DOMAIN; 1.
PROSITE; PS51024; ZF_FCS; 1.
4: Predicted;
Coiled coil {ECO:0000256|SAM:Coils};
Complete proteome {ECO:0000313|Proteomes:UP000000803};
Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00367};
Reference proteome {ECO:0000313|Proteomes:UP000000803};
Zinc {ECO:0000256|PROSITE-ProRule:PRU00367};
Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00367}.
DOMAIN 1304 1337 FCS-type. {ECO:0000259|PROSITE:PS51024}.
DOMAIN 1466 1530 SAM. {ECO:0000259|PROSITE:PS50105}.
COILED 357 391 {ECO:0000256|SAM:Coils}.
COILED 569 596 {ECO:0000256|SAM:Coils}.
COILED 741 806 {ECO:0000256|SAM:Coils}.
COILED 849 876 {ECO:0000256|SAM:Coils}.
SEQUENCE 1537 AA; 161977 MW; 1D12C451DA549A83 CRC64;
MPHGFGAAPS VSVSGDTESE SATTIRTPPP SPEATTSVKV NSTTRVDPQR PLRCLETLAQ
KAGISFDEDF AKSPSQSPSS KAARGSVGTP SIRRRHPLLP LSSRSPSAPD SKTTGRKLEK
SQSPAQQVAA ATNVPLQISP EQLQQLYANN PYAIQVKQEF PTHTTSGSGT ELKHATNIME
VQQQLQLQQQ LSEANGGGAA SAGAGGAASP ANSQQSQQQQ HSTAISTMSP MQLAAATGGV
GGDWTQGRTV QLMQPSTSFL YPQMIVSGNL LHPGGLGQQP IQVITAGKPF QGNGPQMLTT
TTQNAKQMIG GQAGFAGGNY ATCIPSNHNQ SPQTVLISPV NVISHSPQQQ QNLLQSMAAA
AQQQQLTQQQ QQQLNQQQQQ LNQQQQQQQL TAALAKVGVD AQGKLAQKVV QKVTTTSSTV
QAATGPGSTG STQTQQVQQV QQQQQQTTQT TQQCVQVSQS TLPVGVGGQS VQTAQLLNAG
QAQQMQIPWF WQNAAGLQPF GSNQIILRNQ PDGTQGMFIQ QQPATQTLQT QQNQIIQCNV
TQTPTKARTQ LDALAPKQQQ QQQQVGTTNQ TQQQQLAVAT AQLQQQQQQL TAAALQRPGA
PVMPHNGTQV RPASSVSTQT AQNQSLLKAK MRNKQQPVRP ALATLKTEIG QVAGQNKVVG
HLTTVQQQQQ ATNLQQVVNA AGNKMVVMST TGTPITLQNG QTLHAATAAG VDKQQQQLQL
FQKQHILQQQ MLQQQIAAIQ MQQQQAAVQA QQQQQQQVSQ QQQVNAQQQQ AVAQQQQAVA
QAQQQQREQQ QQVAQAQAQH QQALANATQQ ILQVAPNQFI TSHQQQQQQQ LHNQLIQQQL
QQQAQAQVQA QVQAQAQQQQ QQREQQQNII QQIVVQQSTG ATSQQQQQQP QQQSGQLQLS
SVPFSVSPSM TAEDIAGITS SALQEALSVS GAIFQTTKPI TCSSSTLPTS SVVTITSQSS
TPLVTSSTVA SMQQAQTQGT QIHQHQQLIS ATIAGGSQQQ QQQQQLGLPS LTPTTPSPTT
NPILAMTSMM NATVGHLSTA PPVSVSSTAV TPSSGQLVTL SSASSGGGAG FPATPTKETP
SKGPTATLVP IDSPKTPVSG KDTCTTPKSS TPATVSASVE ASSSTGEALS NGDASDRSST
PSKGATTPTS KQSNAAVQPP SSTIPNSVSG KEEPKLTTCG SLTSATSTST TTTITNGIGV
ARTTASTAVS TASTTTTSSG TFTTSCTSTT TTTTSSISNG SKDLPKAMIK PNVLTHVIDG
FIIQEANEPF PVTRQRYADK DVSDEPPKKK ATMQEDIKLS GIASAPGSDM VACEQCGKME
HKAKLKRKRY CSPGCSRQAK NGIGGVGSGE TNGLGTGGIV GVDAMALVDR LDEAMAEEKM
QTESYQTVSD ALPIQAATPE VPPISMPVLA AMSTSSPLSL PLTLPLPIAI APTVSLPVVS
AGVVAPVLAI PSSNINGSDR PPISSWSVEE VSNFIRELPG CQDYVDDFIQ QEIDGQALLL
LKENHLVNAM GMKLGPALKI VAKVESIKEV PPGDVKD


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