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Polymerase acidic protein (EC 3.1.-.-) (Fragment)

 D8WI51_9INFA            Unreviewed;       662 AA.
D8WI51;
05-OCT-2010, integrated into UniProtKB/TrEMBL.
05-OCT-2010, sequence version 1.
30-AUG-2017, entry version 23.
RecName: Full=Polymerase acidic protein {ECO:0000256|SAAS:SAAS00405176};
EC=3.1.-.- {ECO:0000256|SAAS:SAAS00836280};
Flags: Fragment;
Name=PA {ECO:0000313|EMBL:ACY56661.1};
Influenza A virus (A/Korean native chicken/Korea/LBM341/2007(H9N2)).
Viruses; ssRNA viruses; ssRNA negative-strand viruses;
Orthomyxoviridae; Influenzavirus A.
NCBI_TaxID=685307 {ECO:0000313|EMBL:ACY56661.1};
[1] {ECO:0000313|EMBL:ACY56661.1}
NUCLEOTIDE SEQUENCE.
STRAIN=A/Korean native chicken/Korea/LBM341/2007
{ECO:0000313|EMBL:ACY56661.1};
Lee H.-J., Kwon J.-S., Lee D.-H., Lee Y.-N., Youn H.-N., Song C.-S.;
Submitted (OCT-2009) to the EMBL/GenBank/DDBJ databases.
[2] {ECO:0000313|EMBL:ACY56661.1}
NUCLEOTIDE SEQUENCE.
STRAIN=A/Korean native chicken/Korea/LBM341/2007
{ECO:0000313|EMBL:ACY56661.1};
PubMed=20521725; DOI=10.1637/8785-040109-ResNote.1;
Lee H.-J., Kwon J.-S., Lee D.-H., Lee Y.-N., Youn H.-N., Lee Y.-J.,
Kim M.-C., Jeong O.-M., Kang H.-M., Kwon J.-H., Lee J.-B., Park S.-Y.,
Choi I.-S., Song C.-S.;
"Continuing evolution and interspecies transmission of influenza
viruses in live bird markets in Korea.";
Avian Dis. 54:738-748(2010).
[3] {ECO:0000313|EMBL:ACY56661.1}
NUCLEOTIDE SEQUENCE.
STRAIN=A/Korean native chicken/Korea/LBM341/2007
{ECO:0000313|EMBL:ACY56661.1};
PubMed=22386854; DOI=10.1016/j.meegid.2012.02.001;
Lee H.J., Lee D.H., Lee Y.N., Kwon J.S., Lee Y.J., Lee J.B.,
Park S.Y., Choi I.S., Song C.S.;
"Generation of reassortant influenza viruses within the non-industrial
poultry system.";
Infect. Genet. Evol. 12:933-946(2012).
-!- FUNCTION: Plays an essential role in viral RNA transcription and
replication by forming the heterotrimeric polymerase complex
together with PB1 and PB2 subunits. The complex transcribes viral
mRNAs by using a unique mechanism called cap-snatching. It
consists in the hijacking and cleavage of host capped pre-mRNAs.
These short capped RNAs are then used as primers for viral mRNAs.
The PB2 subunit is responsible for the binding of the 5' cap of
cellular pre-mRNAs which are subsequently cleaved after 10-13
nucleotides by the PA subunit that carries the endonuclease
activity. {ECO:0000256|SAAS:SAAS00836215}.
-!- COFACTOR:
Name=Mn(2+); Xref=ChEBI:CHEBI:29035;
Evidence={ECO:0000256|SAAS:SAAS00836355};
-!- SUBUNIT: Influenza RNA polymerase is composed of three subunits:
PB1, PB2 and PA. Interacts (via C-terminus) with PB1 (via N-
terminus). {ECO:0000256|SAAS:SAAS00836207}.
-!- SUBCELLULAR LOCATION: Host cytoplasm
{ECO:0000256|SAAS:SAAS00836308}.
-!- SUBCELLULAR LOCATION: Host nucleus
{ECO:0000256|SAAS:SAAS00836205}.
-!- SIMILARITY: Belongs to the influenza viruses PA family.
{ECO:0000256|SAAS:SAAS00589177}.
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EMBL; GU122100; ACY56661.1; -; Viral_cRNA.
GO; GO:0030430; C:host cell cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell.
GO; GO:0004519; F:endonuclease activity; IEA:UniProtKB-KW.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0003723; F:RNA binding; IEA:InterPro.
GO; GO:0003968; F:RNA-directed 5'-3' RNA polymerase activity; IEA:InterPro.
GO; GO:0075526; P:cap snatching; IEA:UniProtKB-KW.
GO; GO:0039523; P:suppression by virus of host RNA polymerase II activity; IEA:UniProtKB-KW.
GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
InterPro; IPR001009; RNA-dir_pol_influenzavirus.
Pfam; PF00603; Flu_PA; 1.
3: Inferred from homology;
Cap snatching {ECO:0000256|SAAS:SAAS00836340};
Endonuclease {ECO:0000256|SAAS:SAAS00836319};
Eukaryotic host gene expression shutoff by virus
{ECO:0000256|SAAS:SAAS00836208};
Eukaryotic host transcription shutoff by virus
{ECO:0000256|SAAS:SAAS00836208};
Host cytoplasm {ECO:0000256|SAAS:SAAS00836347};
Host gene expression shutoff by virus {ECO:0000256|SAAS:SAAS00836208};
Host nucleus {ECO:0000256|SAAS:SAAS00836298};
Host-virus interaction {ECO:0000256|SAAS:SAAS00836208};
Hydrolase {ECO:0000256|SAAS:SAAS00836319};
Inhibition of host RNA polymerase II by virus
{ECO:0000256|SAAS:SAAS00836208};
Manganese {ECO:0000256|SAAS:SAAS00836185};
Metal-binding {ECO:0000256|SAAS:SAAS00836270};
Nuclease {ECO:0000256|SAAS:SAAS00836319};
Ribosomal frameshifting {ECO:0000256|SAAS:SAAS00836323}.
NON_TER 1 1 {ECO:0000313|EMBL:ACY56661.1}.
NON_TER 662 662 {ECO:0000313|EMBL:ACY56661.1}.
SEQUENCE 662 AA; 76159 MW; 0DE86D5B561FC92F CRC64;
PKIEANKFAA ICTHLEVCFM YSDFHFIDER GESIIVESGD PNALLKHRFE IIEGRDRTMA
WTVVNSICNT TGVDKPKFLP DLYDYKENRF LEIGVTRREV HIYYLEKANK IKSEKTHIHI
FSFTGEEMAT KADYTLDEES RARIKTRLFT IRQEMASRGL WDSFRQSERG EETIEERFEI
TGTMRRLADQ SLPPNFSSLE NFRAYVDGFE PNGCIEGKLS QMSKEVNARI EPFLKTTPRP
LRLPDGPPCS QRSKFLLMDA LKLSIEDPSH EGEGIPLYDA IKCMKTFFGW KEPNIVKPHE
KGINPNYLLA WKQVLAELQD IENEEKIPKT KNMKKTSQLK WALGENMAPE KVDFEDCKDV
SDLRQYNSDE PESRSLAIWI QSEFNKACEL TDSSWIELDE IGEDVAPIEH IASMRRNYFT
AEVSHCRATE YIMKGVYINT ALLNASCAAM DDFQLIPMIS QCRTKEGRRK TNLYGFIIKG
RSHLRNDTDV VNFVSMEFSL TDPRLEPHKW EKYCVLEIGD MLLRTAIGQV SRPMFLYVRT
NGTSKIKMKW GMEMRRCLLQ SLQQIESMIE AESSVKEKDM TKEFFENKSE TWPIGESPKG
VEEGSIGKVC RTLLAKSVFN SLYASPQLEG FSAESRKLLL IVQALRDNLE PGTFDLGGLY
EA


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