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Polyprotein (Fragment)

 B9DF73_WNV              Unreviewed;      1268 AA.
B9DF73;
24-MAR-2009, integrated into UniProtKB/TrEMBL.
24-MAR-2009, sequence version 1.
10-MAY-2017, entry version 31.
SubName: Full=Polyprotein {ECO:0000313|EMBL:CAX41892.1};
Flags: Fragment;
Name=genomic RNA {ECO:0000313|EMBL:CAX41892.1};
West Nile virus strain PT6.5.
Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage;
Flaviviridae; Flavivirus; Japanese encephalitis virus group.
NCBI_TaxID=598674 {ECO:0000313|EMBL:CAX41892.1};
[1] {ECO:0000313|EMBL:CAX41892.1}
NUCLEOTIDE SEQUENCE.
STRAIN=PT6.5 {ECO:0000313|EMBL:CAX41892.1};
PubMed=16417437; DOI=10.1089/vbz.2005.5.410;
Esteves A., Almeida A.P., Galao R.P., Parreira R., Piedade J.,
Rodrigues J.C., Sousa C.A., Novo M.T.;
"West Nile virus in Southern Portugal, 2004.";
Vector Borne Zoonotic Dis. 5:410-413(2005).
[2] {ECO:0000313|EMBL:CAX41892.1}
NUCLEOTIDE SEQUENCE.
STRAIN=PT6.5 {ECO:0000313|EMBL:CAX41892.1};
PubMed=17896871; DOI=10.1089/vbz.2006.0632;
Parreira R., Severino P., Freitas F., Piedade J., Almeida A.P.,
Esteves A.;
"Two distinct introductions of the West Nile virus in Portugal
disclosed by phylogenetic analysis of genomic sequences.";
Vector Borne Zoonotic Dis. 7:344-352(2007).
[3] {ECO:0000313|EMBL:CAX41892.1}
NUCLEOTIDE SEQUENCE.
STRAIN=PT6.5 {ECO:0000313|EMBL:CAX41892.1};
Parreira R.;
Submitted (FEB-2009) to the EMBL/GenBank/DDBJ databases.
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EMBL; AJ965629; CAX41892.1; -; Genomic_RNA.
ProteinModelPortal; B9DF73; -.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0019012; C:virion; IEA:InterPro.
GO; GO:0005524; F:ATP binding; IEA:InterPro.
GO; GO:0004482; F:mRNA (guanine-N7-)-methyltransferase activity; IEA:InterPro.
GO; GO:0004483; F:mRNA (nucleoside-2'-O-)-methyltransferase activity; IEA:InterPro.
GO; GO:0017111; F:nucleoside-triphosphatase activity; IEA:InterPro.
GO; GO:0003968; F:RNA-directed 5'-3' RNA polymerase activity; IEA:InterPro.
GO; GO:0004252; F:serine-type endopeptidase activity; IEA:InterPro.
GO; GO:0070008; F:serine-type exopeptidase activity; IEA:InterPro.
GO; GO:0039694; P:viral RNA genome replication; IEA:InterPro.
InterPro; IPR000404; Flavi_NS4A.
InterPro; IPR001528; Flavi_NS4B.
InterPro; IPR026490; mRNA_cap_0/1_MeTrfase.
InterPro; IPR000208; RNA-dir_pol_flavivirus.
InterPro; IPR007094; RNA-dir_pol_PSvirus.
InterPro; IPR002877; rRNA_MeTrfase_FtsJ_dom.
InterPro; IPR029063; SAM-dependent_MTases.
Pfam; PF01350; Flavi_NS4A; 1.
Pfam; PF01349; Flavi_NS4B; 1.
Pfam; PF00972; Flavi_NS5; 1.
Pfam; PF01728; FtsJ; 1.
SUPFAM; SSF53335; SSF53335; 1.
PROSITE; PS50507; RDRP_SSRNA_POS; 1.
PROSITE; PS51591; RNA_CAP01_NS5_MT; 1.
4: Predicted;
Membrane {ECO:0000256|SAM:Phobius};
Transmembrane {ECO:0000256|SAM:Phobius};
Transmembrane helix {ECO:0000256|SAM:Phobius}.
TRANSMEM 12 30 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 39 57 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 63 80 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 92 114 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 147 164 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 185 208 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 214 233 Helical. {ECO:0000256|SAM:Phobius}.
TRANSMEM 281 300 Helical. {ECO:0000256|SAM:Phobius}.
DOMAIN 364 629 MRNA cap 0-1 NS5-type MT.
{ECO:0000259|PROSITE:PS51591}.
DOMAIN 893 1045 RdRp catalytic.
{ECO:0000259|PROSITE:PS50507}.
NON_TER 1 1 {ECO:0000313|EMBL:CAX41892.1}.
SEQUENCE 1268 AA; 142796 MW; B1E5BF4174015DE5 CRC64;
RALEELPDAL QTIALIALLS VMTMGVFFLL MQRKGIGKIG LGGVVLGVAT FFCWMAEVPG
TKIAGMLLLS LLLMIVLIPE PEKQRSQTDN QLAVFLICVM TLVSAVAANE MGWLDKTKSD
ISSLFGQRIE VKENFSMGEF LLDLRPATAW SLYAVTTAVL TPLLKHLITS DYINTSLTSI
NVQASALFTL ARGFPFVDVG VSALLLAAGC WGQVTLTVTV TAATLLFCHY AYMVPGWQAE
AMRSAQRRTA AGIMKNAVVD GIVATDVPEL ERTTPIMQKK VGQIMLILVS LAAVVVNPSV
KTVREAGILI TAAAVTLWEN GASSVWNATT AIGLCHIMRG GWLSCLSITW TLIKNMDKPG
LKRGGAKGRT LGEVWKERLN QMTKEEFTRY RKEAIIEVDR SAAKHARKEG NVTGGHPVSR
GTAKLRWLVE RRFLEPVGKV IDLGCGRGGW CYYMATQKRV QEVRGYTKGG PGHEEPQLVQ
SYGWNIVTMK SGVDVFYRPS ECCDTLLCDI GESSSSAEVE EHRTIRVLEM VEDWLHRGPR
EFCVKVLCPY MPKVIEKMEL LQRRYGGGLV RNPLSRNSTH EMYWVSRASG NVVHSVNMTS
QVLLGRMEKR TWKGPQYEED VNLGSGTRAV GKPLLNSDTS KIKNRIERLR REYSSTWHHD
ENHPYRTWNY HGSYDVKPTG SASSLVNGVV RLLSKPWDTI TNVTTMAMTD TTPFGQQRVF
KEKVDTKAPE PPEGVKYVLN ETTNWLWAFL AREKRPRMCS REEFIRKVNS NAALGAMFEE
QNQWRSAREA VEDPKFWEMV DEEREAHLRG ECHTCIYNMM GKREKKPGEF GKAKGSRAIW
FMWLGARFLE FEALGFLNED HWLGRKNSGG GVEGLGLQKL GYILREVGTR PGGKIYADDT
AGWDTRITRA DLENEAKVLE LLDGEHRRLA RAIIELTYRH KVVKVMRPAA DGRTVMDVIS
REDQRGSGQV VTYALNTFTN LAVQLVRMME GEGVIGPDDV EKLTKGKGPK VRTWLFENGE
ERLSRMAVSG DDCVVKPLDD RFATSLHFLN AMSKVRKDIQ EWKPSTGWYD WQQVPFCSNH
FTELIMKDGR TLVVPCRGQD ELVGRARISP GAGWNVRDTA CLAKSYAQMW LLLYFHRRDL
RLMANAICSA VPVNWVPTGR TTWSIHAGGE WMTTEDMLEV WNRVWIEENE WMEDKTPVEK
WSDVPYSGKR EDIWCGSLIG TRARATWAEN IQVAINQVRA IIGDEKYVDY MSSLKRYEDT
TLVEDTVL


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