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Pre-rRNA-processing protein IPI1 (Involved in processing IST2 protein 1)

 IPI1_YEAST              Reviewed;         334 AA.
P38803; D3DL36;
01-FEB-1995, integrated into UniProtKB/Swiss-Prot.
01-FEB-1995, sequence version 1.
10-OCT-2018, entry version 130.
RecName: Full=Pre-rRNA-processing protein IPI1;
AltName: Full=Involved in processing IST2 protein 1;
Name=IPI1; OrderedLocusNames=YHR085W;
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
NCBI_TaxID=559292;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 204508 / S288c;
PubMed=8091229; DOI=10.1126/science.8091229;
Johnston M., Andrews S., Brinkman R., Cooper J., Ding H., Dover J.,
Du Z., Favello A., Fulton L., Gattung S., Geisel C., Kirsten J.,
Kucaba T., Hillier L.W., Jier M., Johnston L., Langston Y.,
Latreille P., Louis E.J., Macri C., Mardis E., Menezes S., Mouser L.,
Nhan M., Rifkin L., Riles L., St Peter H., Trevaskis E., Vaughan K.,
Vignati D., Wilcox L., Wohldman P., Waterston R., Wilson R.,
Vaudin M.;
"Complete nucleotide sequence of Saccharomyces cerevisiae chromosome
VIII.";
Science 265:2077-2082(1994).
[2]
GENOME REANNOTATION.
STRAIN=ATCC 204508 / S288c;
PubMed=24374639; DOI=10.1534/g3.113.008995;
Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R.,
Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S.,
Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M.,
Cherry J.M.;
"The reference genome sequence of Saccharomyces cerevisiae: Then and
now.";
G3 (Bethesda) 4:389-398(2014).
[3]
IDENTIFICATION IN THE RIX1 COMPLEX, AND IDENTIFICATION BY MASS
SPECTROMETRY.
PubMed=14690591; DOI=10.1016/S1097-2765(03)00476-3;
Hazbun T.R., Malmstroem L., Anderson S., Graczyk B.J., Fox B.,
Riffle M., Sundin B.A., Aranda J.D., McDonald W.H., Chiu C.-H.,
Snydsman B.E., Bradley P., Muller E.G.D., Fields S., Baker D.,
Yates J.R. III, Davis T.N.;
"Assigning function to yeast proteins by integration of
technologies.";
Mol. Cell 12:1353-1365(2003).
[4]
SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
PubMed=14562095; DOI=10.1038/nature02026;
Huh W.-K., Falvo J.V., Gerke L.C., Carroll A.S., Howson R.W.,
Weissman J.S., O'Shea E.K.;
"Global analysis of protein localization in budding yeast.";
Nature 425:686-691(2003).
[5]
LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
PubMed=14562106; DOI=10.1038/nature02046;
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A.,
Dephoure N., O'Shea E.K., Weissman J.S.;
"Global analysis of protein expression in yeast.";
Nature 425:737-741(2003).
[6]
IDENTIFICATION IN THE RIX1 COMPLEX, SUBCELLULAR LOCATION, FUNCTION OF
THE RIX1 COMPLEX, AND IDENTIFICATION BY MASS SPECTROMETRY.
PubMed=15528184; DOI=10.1074/jbc.M406876200;
Galani K., Nissan T.A., Petfalski E., Tollervey D., Hurt E.;
"Rea1, a dynein-related nuclear AAA-ATPase, is involved in late rRNA
processing and nuclear export of 60 S subunits.";
J. Biol. Chem. 279:55411-55418(2004).
[7]
IDENTIFICATION IN THE RIX1 COMPLEX, AND FUNCTION OF THE RIX1 COMPLEX.
PubMed=14759368; DOI=10.1016/S1097-2765(04)00003-6;
Krogan N.J., Peng W.-T., Cagney G., Robinson M.D., Haw R., Zhong G.,
Guo X., Zhang X., Canadien V., Richards D.P., Beattie B.K., Lalev A.,
Zhang W., Davierwala A.P., Mnaimneh S., Starostine A., Tikuisis A.P.,
Grigull J., Datta N., Bray J.E., Hughes T.R., Emili A.,
Greenblatt J.F.;
"High-definition macromolecular composition of yeast RNA-processing
complexes.";
Mol. Cell 13:225-239(2004).
[8]
IDENTIFICATION IN THE RIX1 COMPLEX, INTERACTION WITH MDN1 AND PRE-60S
RIBOSOMAL PARTICLES, AND IDENTIFICATION BY MASS SPECTROMETRY.
PubMed=15260980; DOI=10.1016/j.molcel.2004.06.033;
Nissan T.A., Galani K., Maco B., Tollervey D., Aebi U., Hurt E.;
"A pre-ribosome with a tadpole-like structure functions in ATP-
dependent maturation of 60S subunits.";
Mol. Cell 15:295-301(2004).
[9]
IDENTIFICATION IN THE RIX1 COMPLEX.
PubMed=26619264; DOI=10.1038/nsmb.3132;
Barrio-Garcia C., Thoms M., Flemming D., Kater L., Berninghausen O.,
Bassler J., Beckmann R., Hurt E.;
"Architecture of the Rix1-Rea1 checkpoint machinery during pre-60S-
ribosome remodeling.";
Nat. Struct. Mol. Biol. 23:37-44(2016).
-!- FUNCTION: Component of the RIX1 complex required for processing of
ITS2 sequences from 35S pre-rRNA. {ECO:0000269|PubMed:14759368,
ECO:0000269|PubMed:15528184}.
-!- SUBUNIT: Component of the RIX1 complex, composed of IPI1,
RIX1/IPI2 and IPI3 in a 1:2:2 stoichiometry. The complex interacts
(via RIX1) with MDN1 (via its hexameric AAA ATPase ring) and the
pre-60S ribosome particles. {ECO:0000269|PubMed:14690591,
ECO:0000269|PubMed:14759368, ECO:0000269|PubMed:15260980,
ECO:0000269|PubMed:15528184}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:14562095,
ECO:0000269|PubMed:15528184}.
-!- MISCELLANEOUS: Present with 4420 molecules/cell in log phase SD
medium. {ECO:0000269|PubMed:14562106}.
-!- SIMILARITY: Belongs to the IPI1/TEX10 family. {ECO:0000305}.
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EMBL; U10556; AAB68883.1; -; Genomic_DNA.
EMBL; BK006934; DAA06780.1; -; Genomic_DNA.
PIR; S46805; S46805.
RefSeq; NP_011953.1; NM_001179215.1.
ProteinModelPortal; P38803; -.
SMR; P38803; -.
BioGrid; 36520; 232.
ComplexPortal; CPX-1711; RIX1 complex.
DIP; DIP-4665N; -.
IntAct; P38803; 28.
MINT; P38803; -.
STRING; 4932.YHR085W; -.
iPTMnet; P38803; -.
MaxQB; P38803; -.
PaxDb; P38803; -.
PRIDE; P38803; -.
EnsemblFungi; YHR085W; YHR085W; YHR085W.
GeneID; 856485; -.
KEGG; sce:YHR085W; -.
EuPathDB; FungiDB:YHR085W; -.
SGD; S000001127; IPI1.
HOGENOM; HOG000094409; -.
InParanoid; P38803; -.
KO; K14827; -.
OMA; GQPRDEE; -.
OrthoDB; EOG092C2WI7; -.
BioCyc; YEAST:G3O-31132-MONOMER; -.
PRO; PR:P38803; -.
Proteomes; UP000002311; Chromosome VIII.
GO; GO:0005829; C:cytosol; IDA:SGD.
GO; GO:0005654; C:nucleoplasm; IDA:SGD.
GO; GO:0005634; C:nucleus; IDA:SGD.
GO; GO:0097344; C:Rix1 complex; IDA:SGD.
GO; GO:0003682; F:chromatin binding; IDA:SGD.
GO; GO:0000463; P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IMP:SGD.
GO; GO:0006267; P:pre-replicative complex assembly involved in nuclear cell cycle DNA replication; IMP:SGD.
GO; GO:0030174; P:regulation of DNA-dependent DNA replication initiation; IMP:SGD.
GO; GO:0000027; P:ribosomal large subunit assembly; IMP:SGD.
GO; GO:0006364; P:rRNA processing; IMP:SGD.
InterPro; IPR016024; ARM-type_fold.
InterPro; IPR024679; Ipi1_N.
InterPro; IPR037947; TEX10/Ipi1.
PANTHER; PTHR16056:SF2; PTHR16056:SF2; 1.
Pfam; PF12333; Ipi1_N; 1.
SUPFAM; SSF48371; SSF48371; 1.
1: Evidence at protein level;
Complete proteome; Nucleus; Reference proteome; Ribosome biogenesis;
rRNA processing.
CHAIN 1 334 Pre-rRNA-processing protein IPI1.
/FTId=PRO_0000202904.
SEQUENCE 334 AA; 37867 MW; 1AB0B318BBFC8096 CRC64;
MTKSRKQKQK KQDFLRKKLK VGKPKEKARN ATDTSFVSKT ISIRNQHLDQ NPHDLTKRLT
LLKHHNINVR KETLTTFQKS IPSIIKSRLM TPLLTQSIPL ICDESQQVRQ GLIDLVDEIG
SHDAEILKLH CNIFVLYINM AMTHIVTQIQ ADSTKFLSHL LKYCGDEVVR KSWVKLLNGV
FGVLGWGQVG KNDSASIVQT KKRNAKYVTI HLNALYTLVE YGCQDERARS DGDTAETTED
SGTLRNPYLI PDYPQPFEHL KLFTRELKVQ DATSSGVNAT LLSLATQDID TRKAVFIEQF
LPIVRKKIEV IIKEGGECGK SANKLKTLLA KIFD


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