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Probable ATP-dependent RNA helicase DDX47 (EC 3.6.4.13) (DEAD box protein 47)

 DDX47_MOUSE             Reviewed;         455 AA.
Q9CWX9;
27-SEP-2004, integrated into UniProtKB/Swiss-Prot.
01-MAR-2003, sequence version 2.
28-FEB-2018, entry version 128.
RecName: Full=Probable ATP-dependent RNA helicase DDX47;
EC=3.6.4.13;
AltName: Full=DEAD box protein 47;
Name=Ddx47;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=C57BL/6J; TISSUE=Testis;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M.,
Davis M.J., Wilming L.G., Aidinis V., Allen J.E.,
Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L.,
Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M.,
Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R.,
Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G.,
di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G.,
Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M.,
Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N.,
Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T.,
Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H.,
Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K.,
Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J.,
Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L.,
Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K.,
Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P.,
Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O.,
Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G.,
Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M.,
Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B.,
Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K.,
Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A.,
Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K.,
Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C.,
Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J.,
Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y.,
Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T.,
Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N.,
Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N.,
Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S.,
Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J.,
Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
-!- FUNCTION: Involved in apoptosis. May have a role in rRNA
processing and mRNA splicing. Associates with pre-rRNA precursors
(By similarity). {ECO:0000250}.
-!- CATALYTIC ACTIVITY: ATP + H(2)O = ADP + phosphate.
-!- SUBUNIT: Interacts with AGO1 and AGO2. Interacts with GABARAP.
Interacts with NOL8; the interaction is RNA-dependent (By
similarity). {ECO:0000250}.
-!- SUBCELLULAR LOCATION: Nucleus, nucleolus {ECO:0000250}.
Note=Localizes in the nucleolar-organizing region during ribosome
biogenesis. {ECO:0000250}.
-!- SIMILARITY: Belongs to the DEAD box helicase family. DDX47/RRP3
subfamily. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; AK010310; BAB26843.2; -; mRNA.
EMBL; AK076982; BAC36547.1; -; mRNA.
CCDS; CCDS20643.1; -.
RefSeq; NP_080636.2; NM_026360.3.
UniGene; Mm.166524; -.
ProteinModelPortal; Q9CWX9; -.
SMR; Q9CWX9; -.
BioGrid; 212421; 3.
IntAct; Q9CWX9; 2.
MINT; Q9CWX9; -.
STRING; 10090.ENSMUSP00000032326; -.
iPTMnet; Q9CWX9; -.
PhosphoSitePlus; Q9CWX9; -.
EPD; Q9CWX9; -.
MaxQB; Q9CWX9; -.
PaxDb; Q9CWX9; -.
PRIDE; Q9CWX9; -.
Ensembl; ENSMUST00000032326; ENSMUSP00000032326; ENSMUSG00000030204.
GeneID; 67755; -.
KEGG; mmu:67755; -.
UCSC; uc009eld.2; mouse.
CTD; 51202; -.
MGI; MGI:1915005; Ddx47.
eggNOG; KOG0330; Eukaryota.
eggNOG; ENOG410XQU7; LUCA.
GeneTree; ENSGT00730000110914; -.
HOGENOM; HOG000268802; -.
HOVERGEN; HBG100512; -.
InParanoid; Q9CWX9; -.
KO; K14777; -.
OMA; LNMDFEV; -.
OrthoDB; EOG091G07QH; -.
PhylomeDB; Q9CWX9; -.
TreeFam; TF105714; -.
Reactome; R-MMU-6791226; Major pathway of rRNA processing in the nucleolus and cytosol.
ChiTaRS; Ddx47; mouse.
PRO; PR:Q9CWX9; -.
Proteomes; UP000000589; Chromosome 6.
Bgee; ENSMUSG00000030204; -.
CleanEx; MM_DDX47; -.
ExpressionAtlas; Q9CWX9; baseline and differential.
Genevisible; Q9CWX9; MM.
GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
GO; GO:0005730; C:nucleolus; ISS:UniProtKB.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0004004; F:ATP-dependent RNA helicase activity; IBA:GO_Central.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO; GO:0008625; P:extrinsic apoptotic signaling pathway via death domain receptors; ISS:UniProtKB.
GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
GO; GO:0010501; P:RNA secondary structure unwinding; IBA:GO_Central.
GO; GO:0008380; P:RNA splicing; ISS:UniProtKB.
GO; GO:0006364; P:rRNA processing; ISS:UniProtKB.
CDD; cd00079; HELICc; 1.
InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
InterPro; IPR014001; Helicase_ATP-bd.
InterPro; IPR001650; Helicase_C.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR000629; RNA-helicase_DEAD-box_CS.
InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
Pfam; PF00270; DEAD; 1.
Pfam; PF00271; Helicase_C; 1.
SMART; SM00487; DEXDc; 1.
SMART; SM00490; HELICc; 1.
SUPFAM; SSF52540; SSF52540; 1.
PROSITE; PS00039; DEAD_ATP_HELICASE; 1.
PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
PROSITE; PS51194; HELICASE_CTER; 1.
PROSITE; PS51195; Q_MOTIF; 1.
2: Evidence at transcript level;
Acetylation; Apoptosis; ATP-binding; Complete proteome; Helicase;
Hydrolase; mRNA processing; mRNA splicing; Nucleotide-binding;
Nucleus; Phosphoprotein; Reference proteome; RNA-binding;
rRNA processing.
INIT_MET 1 1 Removed. {ECO:0000250|UniProtKB:Q9H0S4}.
CHAIN 2 455 Probable ATP-dependent RNA helicase
DDX47.
/FTId=PRO_0000055051.
DOMAIN 55 226 Helicase ATP-binding.
{ECO:0000255|PROSITE-ProRule:PRU00541}.
DOMAIN 237 397 Helicase C-terminal.
{ECO:0000255|PROSITE-ProRule:PRU00542}.
NP_BIND 68 75 ATP. {ECO:0000255|PROSITE-
ProRule:PRU00541}.
MOTIF 24 52 Q motif.
MOTIF 174 177 DEAD box.
MOD_RES 2 2 N-acetylalanine.
{ECO:0000250|UniProtKB:Q9H0S4}.
MOD_RES 9 9 Phosphoserine.
{ECO:0000250|UniProtKB:Q9H0S4}.
MOD_RES 149 149 Phosphothreonine.
{ECO:0000250|UniProtKB:Q9H0S4}.
SEQUENCE 455 AA; 50639 MW; AEAEC9287BD86DFA CRC64;
MAADEEPDSP SGALQTAAEE EETKTFKDLG VTDVLCEACD QLGWAKPTKI QIEAIPLALQ
GRDIIGLAET GSGKTGAFAL PILNALLETP QRLFALVLTP TRELAFQISE QFEALGSSIG
VQCAVIVGGI DSMSQSLALA KKPHIVIATP GRLIDHLENT KGFNLRALKY LVMDEADRIL
NMDFETEVDK ILKVIPRDRK TFLFSATMTK KVQKLQRAAL KNPVKCAVSS KYQTVEKLQQ
YYLFIPSKFK DTYLVYILNE LAGNSFMIFC STCNNTQRTA LLLRNLGFTA IPLHGQMSQS
KRLGSLNKFK AKARSILLAT DVASRGLDIP HVDVVVNFDI PTHSKDYIHR VGRTARAGRS
GKAITFVTQY DVELFQRIEH LIGKKLPVFP TQDEEVMMLT ERVNEAQRFA RMELREHGEK
KKRKREDAGD DDDKEGAIGV RNKVAGGKMK KRKGR


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