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Probable RNA methyltransferase bin3 (EC 2.1.1.-) (Bicoid-interacting protein 3)

 BN3D1_DROME             Reviewed;        1367 AA.
Q7K480; Q86LF5; Q9NJV6;
29-MAY-2007, integrated into UniProtKB/Swiss-Prot.
03-OCT-2006, sequence version 1.
27-SEP-2017, entry version 95.
RecName: Full=Probable RNA methyltransferase bin3;
EC=2.1.1.-;
AltName: Full=Bicoid-interacting protein 3;
Name=bin3; ORFNames=CG8276;
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227;
[1]
NUCLEOTIDE SEQUENCE [MRNA], TISSUE SPECIFICITY, DEVELOPMENTAL STAGE,
AND INTERACTION WITH BCD.
PubMed=10717484; DOI=10.1016/S0378-1119(00)00048-2;
Zhu W., Hanes S.D.;
"Identification of Drosophila bicoid-interacting proteins using a
custom two-hybrid selection.";
Gene 245:329-339(2000).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley;
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G.,
Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A.,
Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X.,
Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[3]
GENOME REANNOTATION.
STRAIN=Berkeley;
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D.N.J., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=Berkeley; TISSUE=Embryo;
PubMed=12537569; DOI=10.1186/gb-2002-3-12-research0080;
Stapleton M., Carlson J.W., Brokstein P., Yu C., Champe M.,
George R.A., Guarin H., Kronmiller B., Pacleb J.M., Park S., Wan K.H.,
Rubin G.M., Celniker S.E.;
"A Drosophila full-length cDNA resource.";
Genome Biol. 3:RESEARCH0080.1-RESEARCH0080.8(2002).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=Berkeley; TISSUE=Embryo;
Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J.W.,
Champe M., Chavez C., Dorsett V., Dresnek D., Farfan D., Frise E.,
George R.A., Gonzalez M., Guarin H., Kronmiller B., Li P.W., Liao G.,
Miranda A., Mungall C.J., Nunoo J., Pacleb J.M., Paragas V., Park S.,
Patel S., Phouanenavong S., Wan K.H., Yu C., Lewis S.E., Rubin G.M.,
Celniker S.E.;
Submitted (FEB-2003) to the EMBL/GenBank/DDBJ databases.
[6]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-688; THR-1116; SER-1123;
SER-1242 AND SER-1251, AND IDENTIFICATION BY MASS SPECTROMETRY.
TISSUE=Embryo;
PubMed=18327897; DOI=10.1021/pr700696a;
Zhai B., Villen J., Beausoleil S.A., Mintseris J., Gygi S.P.;
"Phosphoproteome analysis of Drosophila melanogaster embryos.";
J. Proteome Res. 7:1675-1682(2008).
[7]
FUNCTION, DEVELOPMENTAL STAGE, AND DISRUPTION PHENOTYPE.
PubMed=21262214; DOI=10.1016/j.ydbio.2011.01.017;
Singh N., Morlock H., Hanes S.D.;
"The Bin3 RNA methyltransferase is required for repression of caudal
translation in the Drosophila embryo.";
Dev. Biol. 352:104-115(2011).
-!- FUNCTION: S-adenosyl-L-methionine-dependent methyltransferase that
adds a methylphosphate cap at the 5'-end of 7SK snRNA, leading to
stabilize it (Probable). Required for dorso-ventral patterning in
oogenesis and for anterior-posterior pattern formation during
embryogenesis, possibly by binding and stabilizing 7SK RNA,
thereby promoting formation of a repressive RNA-protein complex.
{ECO:0000269|PubMed:21262214, ECO:0000305}.
-!- SUBUNIT: Interacts with bicoid/bcd. {ECO:0000269|PubMed:10717484}.
-!- INTERACTION:
P09081:bcd; NbExp=4; IntAct=EBI-180984, EBI-196628;
-!- TISSUE SPECIFICITY: Distributed throughout the early embryo.
{ECO:0000269|PubMed:10717484}.
-!- DEVELOPMENTAL STAGE: Detectable in early embryos. Present
coincident with bicoid/bcd expression, with peak levels detected
in 0-2 hours embryos. Expression is lower during cellularization
stages (2-4 hours) and drops dramatically during late embryonic
development (4-24 hours). Very little, if any expression is
detected in unfertilized eggs. {ECO:0000269|PubMed:10717484,
ECO:0000269|PubMed:21262214}.
-!- DISRUPTION PHENOTYPE: Severe defect in oogenesis: females lay
eggs, however, up to 50% do not initiate development and many show
a dorsalized phenotype. Among the eggs that do initiate
development, up to 20% fail to complete embryogenesis and of
these, nearly all display severe head defects and die as unhatched
larvae or die soon after hatching. Mutants show anterior pattern
defects and fail to repress the translation of caudal mRNA and
exhibit head involution defects. Mutants also display a severe
reduction in the level of 7SK RNA and reduced binding of
bicoid/bcd to the caudal 3' UTR. {ECO:0000269|PubMed:21262214}.
-!- SIMILARITY: Belongs to the methyltransferase superfamily.
{ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAO47868.1; Type=Frameshift; Positions=810; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; AF097636; AAF63187.1; -; mRNA.
EMBL; AE013599; AAF57267.2; -; Genomic_DNA.
EMBL; AY052142; AAK93566.1; -; mRNA.
EMBL; BT004890; AAO47868.1; ALT_FRAME; mRNA.
RefSeq; NP_001260724.1; NM_001273795.1.
RefSeq; NP_001303336.1; NM_001316407.1.
RefSeq; NP_523626.2; NM_078902.3.
RefSeq; NP_724468.1; NM_165468.2.
UniGene; Dm.2881; -.
ProteinModelPortal; Q7K480; -.
BioGrid; 61453; 7.
IntAct; Q7K480; 10.
STRING; 7227.FBpp0085336; -.
iPTMnet; Q7K480; -.
PaxDb; Q7K480; -.
PRIDE; Q7K480; -.
EnsemblMetazoa; FBtr0085992; FBpp0085336; FBgn0263144.
EnsemblMetazoa; FBtr0085993; FBpp0085337; FBgn0263144.
EnsemblMetazoa; FBtr0336519; FBpp0307591; FBgn0263144.
EnsemblMetazoa; FBtr0346718; FBpp0312329; FBgn0263144.
GeneID; 35552; -.
KEGG; dme:Dmel_CG8276; -.
CTD; 55909; -.
FlyBase; FBgn0263144; bin3.
eggNOG; KOG2899; Eukaryota.
eggNOG; ENOG410XZ7T; LUCA.
GeneTree; ENSGT00390000015611; -.
InParanoid; Q7K480; -.
KO; K15190; -.
OMA; CAGNNAN; -.
OrthoDB; EOG091G054W; -.
PhylomeDB; Q7K480; -.
GenomeRNAi; 35552; -.
PRO; PR:Q7K480; -.
Proteomes; UP000000803; Chromosome 2R.
Bgee; FBgn0263144; -.
ExpressionAtlas; Q7K480; differential.
Genevisible; Q7K480; DM.
GO; GO:0005634; C:nucleus; IDA:FlyBase.
GO; GO:0008168; F:methyltransferase activity; ISS:FlyBase.
GO; GO:0001085; F:RNA polymerase II transcription factor binding; IPI:FlyBase.
GO; GO:0017069; F:snRNA binding; IDA:FlyBase.
GO; GO:0032502; P:developmental process; IMP:UniProtKB.
GO; GO:0070868; P:heterochromatin organization involved in chromatin silencing; IMP:FlyBase.
GO; GO:0032259; P:methylation; ISS:FlyBase.
GO; GO:0017148; P:negative regulation of translation; IMP:FlyBase.
GO; GO:0042048; P:olfactory behavior; IMP:FlyBase.
InterPro; IPR010675; Bin3_C.
InterPro; IPR024160; BIN3_SAM-bd_dom.
InterPro; IPR025714; Methyltranfer_dom.
InterPro; IPR029063; SAM-dependent_MTases.
Pfam; PF06859; Bin3; 1.
Pfam; PF13847; Methyltransf_31; 1.
SUPFAM; SSF53335; SSF53335; 3.
PROSITE; PS51515; BIN3_SAM; 1.
1: Evidence at protein level;
Complete proteome; Methyltransferase; Phosphoprotein;
Reference proteome; S-adenosyl-L-methionine; Transferase.
CHAIN 1 1367 Probable RNA methyltransferase bin3.
/FTId=PRO_0000289269.
DOMAIN 806 1115 Bin3-type SAM. {ECO:0000255|PROSITE-
ProRule:PRU00848}.
COMPBIAS 145 253 Gly-rich.
COMPBIAS 150 211 His-rich.
COMPBIAS 915 926 His-rich.
MOD_RES 688 688 Phosphoserine.
{ECO:0000269|PubMed:18327897}.
MOD_RES 1116 1116 Phosphothreonine.
{ECO:0000269|PubMed:18327897}.
MOD_RES 1123 1123 Phosphoserine.
{ECO:0000269|PubMed:18327897}.
MOD_RES 1242 1242 Phosphoserine.
{ECO:0000269|PubMed:18327897}.
MOD_RES 1251 1251 Phosphoserine.
{ECO:0000269|PubMed:18327897}.
CONFLICT 573 573 L -> LA (in Ref. 1; AAF63187).
{ECO:0000305}.
CONFLICT 1152 1152 S -> G (in Ref. 5; AAO47868).
{ECO:0000305}.
CONFLICT 1267 1267 S -> R (in Ref. 5; AAO47868).
{ECO:0000305}.
SEQUENCE 1367 AA; 146234 MW; FA3EDD8FDAA7A551 CRC64;
MEKRLSDSPG DCRVTRSTMT PTLRLDQTSR QEPLPQQPDN GPAAAPGKSK SPTPLPGKSQ
AAQHHQFRAP QQQQGPKNRN KAWSKRQHKA GGKHNPSACV GASSGQAQST GSSVIAATLL
PTAASAHKAD LENIQNIHNK NLTAGGGVNH HGNAGTAHHG GGGGAGAHHA AAGGHHHHHN
TRLAQNAAAG GASGGGTIQM HKKMLRGHHH HVLCAGNNAN HTCCLVTGCN GSSIGGVGVA
GSGGATASAG GGGASCKEAQ SCKDTSSLSG NSSIAGSAGA GNAVHYCCGR SKFFLPEKRL
RKEVIVPPTK FLLGGNISDP LNLNSLQNEN TSNASSTNNT PATTPRQSPI TTPPKVEVII
PPNIHDPLHL LDPVDSMEYE KQLTSPMKRA GPGGGMLHHR QHHYRTRKNR KRRRFDSNNT
SHAGDEGGVG SELTDEPPLP AATSSLAASP VAAPLNVGGS LLLSESAAPA PGETAEMGQQ
QEQAHVHSPQ SASTTTTAAE MPTPTPTSAA AATATAEHKE QSAPAPTATS SPQRQQQHVA
AAAEELPTPE TSAAAETPAE EMLLSCSATS ASLVASTLAE RRASRDLRLD LSSTCYGVGG
TGLSFGGSIS SSVGSSFGGG GRKRKISESS TSQKSKKFHR HDAMDKIVSP VVPQPGAWKR
PPRILQPSGA RKPSTRRSTS VSESELLSPV EEQPPKQLPL IGVEIPRDDT PDLPDHGLGS
PLSTTSGATS HTAGEQDSLA GVDISMGDTL GSGVVGKAPL TSSLMLEPAK IPPIKMLPKF
RADGLKYRYG NFDRYVDFRQ MNEFRDVRLQ VFQRHVELFE NKDILDIGCN VGHMTITVAR
HLAPKTIVGI DIDRELVARA RRNLSIFVRI PKEEKLLEVK AEPTVDAKAN IAVKDETSGA
AHKKTRRGKR RRKVHQGIHH HHHHHHDLEQ LQQQQKLNSL LVKPHEFFPI SFPLTYGRIP
RILSSSKSPN MLGNKNQFPA NVFFRHTNYV LKDESLMASD TQQYDLILCL SVTKWIHLNF
GDNGLKMAFK RMFNQLRPGG KLILEAQNWA SYKKKKNLTP EIYNNYKQIE FFPNKFHEYL
LSSEVGFSHS YTLGVPRHMN KGFCRPIQLY AKGDYTPNHV RWSDAYYPQT PYEAYRGIYA
TLPVHRMGGG GSSAGGSNSG HAQMLHLSSS SRSQNYDTPH YAGSASGSAS CRQTPMYQPT
YNPLETDSYQ PSYDMEYLNH MYVFASPLYQ TVWSPPASLR KSSSHTPVFG SVRDAELDGD
GSGGGGSGGG SYHRHVYPPN DDTCSPNANA CNAFNSIRDA DTDDSNQLPG GSRRHVYATN
CGESSSSPQV NHHDAVGEFV DGLMDDEQKS STGGGTGGAA YCDLSDA


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