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Probable WRKY transcription factor 10 (Protein MINISEED 3) (WRKY DNA-binding protein 10)

 WRK10_ARATH             Reviewed;         485 AA.
Q9LG05; Q1PFK1; Q8VWQ3;
11-APR-2003, integrated into UniProtKB/Swiss-Prot.
12-JUN-2007, sequence version 2.
25-APR-2018, entry version 103.
RecName: Full=Probable WRKY transcription factor 10;
AltName: Full=Protein MINISEED 3;
AltName: Full=WRKY DNA-binding protein 10;
Name=WRKY10; Synonyms=MINI3; OrderedLocusNames=At1g55600;
ORFNames=F20N2.3;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Columbia; TISSUE=Flower;
Ulker B., Kushnir S., Somssich I.E.;
"Arabidopsis thaliana transcription factor WRKY10.";
Submitted (DEC-2001) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130712; DOI=10.1038/35048500;
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y.,
Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P.,
Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A.,
Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I.,
Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D.,
Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M.,
Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M.,
Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana.";
Nature 408:816-820(2000).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=17147637; DOI=10.1111/j.1467-7652.2006.00183.x;
Underwood B.A., Vanderhaeghen R., Whitford R., Town C.D., Hilson P.;
"Simultaneous high-throughput recombinational cloning of open reading
frames in closed and open configurations.";
Plant Biotechnol. J. 4:317-324(2006).
[5]
FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, DEVELOPMENTAL
STAGE, AND MUTAGENESIS OF GLU-344.
PubMed=16293693; DOI=10.1073/pnas.0508418102;
Luo M., Dennis E.S., Berger F., Peacock W.J., Chaudhury A.;
"MINISEED3 (MINI3), a WRKY family gene, and HAIKU2 (IKU2), a leucine-
rich repeat (LRR) KINASE gene, are regulators of seed size in
Arabidopsis.";
Proc. Natl. Acad. Sci. U.S.A. 102:17531-17536(2005).
[6]
INTERACTION WITH IKU1.
PubMed=20545893; DOI=10.1111/j.1365-313X.2010.04271.x;
Wang A., Garcia D., Zhang H., Feng K., Chaudhury A., Berger F.,
Peacock W.J., Dennis E.S., Luo M.;
"The VQ motif protein IKU1 regulates endosperm growth and seed size in
Arabidopsis.";
Plant J. 63:670-679(2010).
-!- FUNCTION: Transcription factor. Interacts specifically with the W
box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-
responsive cis-acting element (By similarity). Modulates seed size
by negatively regulating the cellularization of syncytial
endosperm (PubMed:16293693). {ECO:0000250,
ECO:0000269|PubMed:16293693}.
-!- SUBUNIT: Interacts with IKU1. {ECO:0000269|PubMed:20545893}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00223, ECO:0000269|PubMed:16293693}.
-!- TISSUE SPECIFICITY: Expressed in male gametophytes (pollen) and in
the endosperm of fertilized ovules. {ECO:0000269|PubMed:16293693}.
-!- DEVELOPMENTAL STAGE: Expressed in the endosperm of embryo from the
two nuclei stage to the late globular embryo stage, including the
endosperm cellularization time. {ECO:0000269|PubMed:16293693}.
-!- SIMILARITY: Belongs to the WRKY group I family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAF79511.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; AY071851; AAL61861.1; -; mRNA.
EMBL; AC002328; AAF79511.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002684; AEE33270.1; -; Genomic_DNA.
EMBL; DQ446362; ABE65713.1; -; mRNA.
RefSeq; NP_175956.1; NM_104436.2.
UniGene; At.42934; -.
ProteinModelPortal; Q9LG05; -.
SMR; Q9LG05; -.
BioGrid; 27234; 1.
STRING; 3702.AT1G55600.1; -.
PaxDb; Q9LG05; -.
EnsemblPlants; AT1G55600.1; AT1G55600.1; AT1G55600.
GeneID; 842009; -.
Gramene; AT1G55600.1; AT1G55600.1; AT1G55600.
KEGG; ath:AT1G55600; -.
Araport; AT1G55600; -.
TAIR; locus:2020467; AT1G55600.
eggNOG; ENOG410IG58; Eukaryota.
eggNOG; ENOG41123YD; LUCA.
InParanoid; Q9LG05; -.
OMA; NPISEIF; -.
OrthoDB; EOG09360FV5; -.
PhylomeDB; Q9LG05; -.
PRO; PR:Q9LG05; -.
Proteomes; UP000006548; Chromosome 1.
ExpressionAtlas; Q9LG05; baseline and differential.
Genevisible; Q9LG05; AT.
GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO; GO:0003700; F:DNA binding transcription factor activity; IDA:TAIR.
GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
GO; GO:0009960; P:endosperm development; IMP:TAIR.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
Gene3D; 2.20.25.80; -; 1.
InterPro; IPR003657; WRKY_dom.
InterPro; IPR036576; WRKY_dom_sf.
Pfam; PF03106; WRKY; 1.
SMART; SM00774; WRKY; 1.
SUPFAM; SSF118290; SSF118290; 1.
PROSITE; PS50811; WRKY; 1.
1: Evidence at protein level;
Complete proteome; DNA-binding; Nucleus; Reference proteome;
Transcription; Transcription regulation.
CHAIN 1 485 Probable WRKY transcription factor 10.
/FTId=PRO_0000133652.
DNA_BIND 301 366 WRKY. {ECO:0000255|PROSITE-
ProRule:PRU00223}.
COMPBIAS 208 267 Asp-rich.
COMPBIAS 268 273 Poly-Pro.
MUTAGEN 344 344 E->K: In mini3-1; reduced seed size and
earlier endosperm cellularization.
{ECO:0000269|PubMed:16293693}.
SEQUENCE 485 AA; 54552 MW; 3D96CE29CC9BFAC0 CRC64;
MSDFDENFIE MTSYWAPPSS PSPRTILAML EQTDNGLNPI SEIFPQESLP RDHTDQSGQR
SGLRERLAAR VGFNLPTLNT EENMSPLDAF FRSSNVPNSP VVAISPGFSP SALLHTPNMV
SDSSQIIPPS SATNYGPLEM VETSGEDNAA MMMFNNDLPY QPYNVDLPSL EVFDDIATEE
SFYIPSYEPH VDPIGTPLVT SFESELVDDA HTDIISIEDS ESEDGNKDDD DEDFQYEDED
EDQYDQDQDV DEDEEEEKDE DNVALDDPQP PPPKRRRYEV SNMIGATRTS KTQRIILQME
SDEDNPNDGY RWRKYGQKVV KGNPNPRSYF KCTNIECRVK KHVERGADNI KLVVTTYDGI
HNHPSPPARR SNSSSRNRSA GATIPQNQND RTSRLGRAPP TPTPPTPPPS SYTPEEMRPF
SSLATEIDLT EVYMTGISML PNIPVYENSG FMYQNDEPTM NAMPDGSDVY DGIMERLYFK
FGVDM


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