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Probable WRKY transcription factor 53 (WRKY DNA-binding protein 53)

 WRK53_ARATH             Reviewed;         324 AA.
Q9SUP6; Q0WSJ2;
11-APR-2003, integrated into UniProtKB/Swiss-Prot.
01-MAY-2000, sequence version 1.
07-NOV-2018, entry version 136.
RecName: Full=Probable WRKY transcription factor 53 {ECO:0000303|PubMed:17369373};
AltName: Full=WRKY DNA-binding protein 53 {ECO:0000303|PubMed:17369373};
Name=WRKY53 {ECO:0000303|PubMed:17369373};
OrderedLocusNames=At4g23810 {ECO:0000312|Araport:AT4G23810};
ORFNames=F9D16.280 {ECO:0000312|EMBL:CAA23047.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], AND INDUCTION.
PubMed=11449049; DOI=10.1105/tpc.13.7.1527;
Yu D., Chen C., Chen Z.;
"Evidence for an important role of WRKY DNA binding proteins in the
regulation of NPR1 gene expression.";
Plant Cell 13:1527-1540(2001).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617198; DOI=10.1038/47134;
Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G.,
Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N.,
Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M.,
Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M.,
Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T.,
Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I.,
Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P.,
Langham S.-A., McCullagh B., Bilham L., Robben J.,
van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F.,
Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E.,
Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W.,
Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P.,
Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H.,
De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R.,
van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S.,
Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R.,
Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S.,
Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H.,
Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S.,
Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A.,
Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R.,
Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S.,
Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E.,
Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A.,
Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T.,
Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C.,
Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S.,
Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K.,
Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L.,
Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J.,
Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J.,
Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D.,
Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D.,
Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C.,
Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C.,
Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R.,
Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S.,
Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A.,
Chen E., Marra M.A., Martienssen R., McCombie W.R.;
"Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana.";
Nature 402:769-777(1999).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
De Los Reyes C., Quan R., Chen H., Bautista V.R., Kim C.J.,
Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases.
[7]
INDUCTION.
STRAIN=cv. Columbia;
PubMed=11506370; DOI=10.1007/s004250000512;
Hinderhofer K., Zentgraf U.;
"Identification of a transcription factor specifically expressed at
the onset of leaf senescence.";
Planta 213:469-473(2001).
[8]
FUNCTION, SUBCELLULAR LOCATION, INDUCTION, INTERACTION WITH ESP, AND
DISRUPTION PHENOTYPE.
PubMed=17369373; DOI=10.1105/tpc.106.042705;
Miao Y., Zentgraf U.;
"The antagonist function of Arabidopsis WRKY53 and ESR/ESP in leaf
senescence is modulated by the jasmonic and salicylic acid
equilibrium.";
Plant Cell 19:819-830(2007).
[9]
FUNCTION, INTERACTION WITH UPL5, AND UBIQUITINATION.
PubMed=20409006; DOI=10.1111/j.1365-313X.2010.04233.x;
Miao Y., Zentgraf U.;
"A HECT E3 ubiquitin ligase negatively regulates Arabidopsis leaf
senescence through degradation of the transcription factor WRKY53.";
Plant J. 63:179-188(2010).
[10]
FUNCTION, INTERACTION WITH WRKY30, INDUCTION BY SALICYLIC ACID, AND
DEVELOPMENTAL STAGE.
STRAIN=cv. Columbia;
PubMed=22268143; DOI=10.1093/jxb/err450;
Besseau S., Li J., Palva E.T.;
"WRKY54 and WRKY70 co-operate as negative regulators of leaf
senescence in Arabidopsis thaliana.";
J. Exp. Bot. 63:2667-2679(2012).
[11]
FUNCTION, DISRUPTION PHENOTYPE, AND INDUCTION BY SALICYLIC ACID AND
PSEUDOMONAS SYRINGAE.
STRAIN=cv. Columbia;
PubMed=22325892; DOI=10.1016/j.plantsci.2011.12.003;
Hu Y., Dong Q., Yu D.;
"Arabidopsis WRKY46 coordinates with WRKY70 and WRKY53 in basal
resistance against pathogen Pseudomonas syringae.";
Plant Sci. 185:288-297(2012).
-!- FUNCTION: Transcription factor. Interacts specifically with the W
box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-
responsive cis-acting element (PubMed:20409006). May regulate the
early events of leaf senescence (PubMed:17369373,
PubMed:20409006). Negatively regulates the expression of ESR/ESP
(PubMed:20409006). Together with WRKY46 and WRKY70, promotes
resistance to P.syringae, probably by enhancing salicylic acid
(SA)- dependent genes. Contributes to the suppression of jasmonic
acid (MeJA)-induced expression of PDF1.2 (PubMed:22325892).
{ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006,
ECO:0000269|PubMed:22325892}.
-!- SUBUNIT: Interacts with ESR/ESP and UPL5 (PubMed:17369373,
PubMed:20409006). Binds to WRKY30 (PubMed:22268143).
{ECO:0000269|PubMed:17369373, ECO:0000269|PubMed:20409006,
ECO:0000269|PubMed:22268143}.
-!- INTERACTION:
P25854:CAM4; NbExp=2; IntAct=EBI-1235980, EBI-1235664;
Q03509:CAM6; NbExp=2; IntAct=EBI-1235980, EBI-1236097;
Q9S744:CML9; NbExp=2; IntAct=EBI-1235980, EBI-1236048;
Q8RY71:ESP; NbExp=6; IntAct=EBI-1235980, EBI-1997188;
Q39008:MEKK1; NbExp=5; IntAct=EBI-1235980, EBI-994439;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00223, ECO:0000269|PubMed:17369373}.
-!- DEVELOPMENTAL STAGE: Accumulates during developmental leaf
senescence. {ECO:0000269|PubMed:22268143}.
-!- INDUCTION: By salicylic acid (SA) (PubMed:22268143,
PubMed:22325892). Strong accumulation during leaf senescence
(PubMed:22268143). Down-regulated by jasmonate. Triggered by
P.syringae (PubMed:22325892). {ECO:0000269|PubMed:11449049,
ECO:0000269|PubMed:11506370, ECO:0000269|PubMed:17369373,
ECO:0000269|PubMed:22268143, ECO:0000269|PubMed:22325892}.
-!- PTM: Ubiquitinated by UPL5. Ubiquitination leads to its subsequent
degradation, thus controlling the timing of leaf senescence.
{ECO:0000269|PubMed:20409006}.
-!- DISRUPTION PHENOTYPE: Retarded leaf senescence, but no effects on
pathogen resistance (PubMed:17369373). Increased susceptibility to
P.syringae associated with reduced PR1 induction; stronger
symptoms in double mutants wrky46 wrky70 and wrky46 wrky53,and
triple mutant wrky46 wrky70 wrky53. In these mutants, higher
induction of PDF1.2 upon jasmonic acid (MeJA) treatment
(PubMed:22325892). {ECO:0000269|PubMed:17369373,
ECO:0000269|PubMed:22325892}.
-!- SIMILARITY: Belongs to the WRKY group III family. {ECO:0000305}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; AF272748; AAK28442.1; -; mRNA.
EMBL; AL035394; CAA23047.1; -; Genomic_DNA.
EMBL; AL161560; CAB81299.1; -; Genomic_DNA.
EMBL; CP002687; AEE84809.1; -; Genomic_DNA.
EMBL; AF370614; AAK43933.1; -; mRNA.
EMBL; BT033113; ACF20468.1; -; mRNA.
EMBL; AK227938; BAE99906.1; -; mRNA.
PIR; T05613; T05613.
RefSeq; NP_194112.1; NM_118512.3.
UniGene; At.2572; -.
UniGene; At.71059; -.
ProteinModelPortal; Q9SUP6; -.
SMR; Q9SUP6; -.
BioGrid; 13770; 5.
IntAct; Q9SUP6; 10.
STRING; 3702.AT4G23810.1; -.
iPTMnet; Q9SUP6; -.
PaxDb; Q9SUP6; -.
PRIDE; Q9SUP6; -.
EnsemblPlants; AT4G23810.1; AT4G23810.1; AT4G23810.
GeneID; 828481; -.
Gramene; AT4G23810.1; AT4G23810.1; AT4G23810.
KEGG; ath:AT4G23810; -.
Araport; AT4G23810; -.
TAIR; locus:2128514; AT4G23810.
eggNOG; ENOG410IM0H; Eukaryota.
eggNOG; ENOG410YZU1; LUCA.
HOGENOM; HOG000006380; -.
InParanoid; Q9SUP6; -.
OMA; LMNLRAN; -.
OrthoDB; EOG09360DC7; -.
PhylomeDB; Q9SUP6; -.
PRO; PR:Q9SUP6; -.
Proteomes; UP000006548; Chromosome 4.
ExpressionAtlas; Q9SUP6; baseline and differential.
Genevisible; Q9SUP6; AT.
GO; GO:0009507; C:chloroplast; IDA:TAIR.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0003677; F:DNA binding; IDA:TAIR.
GO; GO:0003700; F:DNA-binding transcription factor activity; IMP:TAIR.
GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0044212; F:transcription regulatory region DNA binding; IBA:GO_Central.
GO; GO:0042742; P:defense response to bacterium; IMP:UniProtKB.
GO; GO:0009816; P:defense response to bacterium, incompatible interaction; IMP:TAIR.
GO; GO:0010150; P:leaf senescence; IMP:TAIR.
GO; GO:0045893; P:positive regulation of transcription, DNA-templated; IDA:TAIR.
GO; GO:0031347; P:regulation of defense response; IMP:TAIR.
GO; GO:2000022; P:regulation of jasmonic acid mediated signaling pathway; IMP:UniProtKB.
GO; GO:0009617; P:response to bacterium; IEP:UniProtKB.
GO; GO:0010200; P:response to chitin; IEP:TAIR.
GO; GO:0042542; P:response to hydrogen peroxide; IEP:TAIR.
GO; GO:0010193; P:response to ozone; IEP:TAIR.
GO; GO:0009751; P:response to salicylic acid; IEP:UniProtKB.
Gene3D; 2.20.25.80; -; 1.
InterPro; IPR003657; WRKY_dom.
InterPro; IPR036576; WRKY_dom_sf.
Pfam; PF03106; WRKY; 1.
SMART; SM00774; WRKY; 1.
SUPFAM; SSF118290; SSF118290; 1.
PROSITE; PS50811; WRKY; 1.
1: Evidence at protein level;
Complete proteome; DNA-binding; Jasmonic acid signaling pathway;
Nucleus; Plant defense; Reference proteome; Transcription;
Transcription regulation; Ubl conjugation.
CHAIN 1 324 Probable WRKY transcription factor 53.
/FTId=PRO_0000133694.
DNA_BIND 152 220 WRKY. {ECO:0000255|PROSITE-
ProRule:PRU00223}.
SEQUENCE 324 AA; 36273 MW; 017A5316B2C27578 CRC64;
MEGRDMLSWE QKTLLSELIN GFDAAKKLQA RLREAPSPSS SFSSPATAVA ETNEILVKQI
VSSYERSLLL LNWSSSPSVQ LIPTPVTVVP VANPGSVPES PASINGSPRS EEFADGGGSS
ESHHRQDYIF NSKKRKMLPK WSEKVRISPE RGLEGPQDDV FSWRKYGQKD ILGAKFPRSY
YRCTHRSTQN CWATKQVQRS DGDATVFEVT YRGTHTCSQA ITRTPPLASP EKRQDTRVKP
AITQKPKDIL ESLKSNLTVR TDGLDDGKDV FSFPDTPPFY NYGTINGEFG HVESSPIFDV
VDWFNPTVEI DTTFPAFLHE SIYY


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