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Probable deoxycholate-binding periplasmic protein YgiS

 YGIS_ECOLI              Reviewed;         535 AA.
Q46863; Q2M9I0;
15-JUL-1999, integrated into UniProtKB/Swiss-Prot.
01-NOV-1996, sequence version 1.
28-MAR-2018, entry version 106.
RecName: Full=Probable deoxycholate-binding periplasmic protein YgiS;
Flags: Precursor;
Name=ygiS; OrderedLocusNames=b3020, JW2988;
Escherichia coli (strain K12).
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
Enterobacteriaceae; Escherichia.
NCBI_TaxID=83333;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / MG1655 / ATCC 47076;
PubMed=9278503; DOI=10.1126/science.277.5331.1453;
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J.,
Mau B., Shao Y.;
"The complete genome sequence of Escherichia coli K-12.";
Science 277:1453-1462(1997).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
PubMed=16738553; DOI=10.1038/msb4100049;
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
"Highly accurate genome sequences of Escherichia coli K-12 strains
MG1655 and W3110.";
Mol. Syst. Biol. 2:E1-E5(2006).
[3]
IDENTIFICATION BY MASS SPECTROMETRY.
STRAIN=B / BL21;
PubMed=10493123;
DOI=10.1002/(SICI)1522-2683(19990801)20:11<2181::AID-ELPS2181>3.0.CO;2-Q;
Fountoulakis M., Takacs M.-F., Berndt P., Langen H., Takacs B.;
"Enrichment of low abundance proteins of Escherichia coli by
hydroxyapatite chromatography.";
Electrophoresis 20:2181-2195(1999).
[4]
FUNCTION, SUBCELLULAR LOCATION, INDUCTION, AND DISRUPTION PHENOTYPE.
STRAIN=K12 / BW25113;
PubMed=25534751; DOI=10.1111/1462-2920.12749;
Kwan B.W., Lord D.M., Peti W., Page R., Benedik M.J., Wood T.K.;
"The MqsR/MqsA toxin/antitoxin system protects Escherichia coli during
bile acid stress.";
Environ. Microbiol. 17:3168-3181(2015).
-!- FUNCTION: Probably part of a deoxycholate transport system. Its
expression in the presence of deoxycholate in a ygiS deletion
mutant increases intracellular deoxycholate levels and decreases
cell growth; higher expression in the presence of deoxycholate
inhibits cell growth completely. Bile acid detergents such as
deoxycholate are important for host defense against bacterial
growth in the gall bladder and duodenum.
{ECO:0000269|PubMed:25534751}.
-!- SUBCELLULAR LOCATION: Periplasm {ECO:0000305|PubMed:25534751}.
-!- INDUCTION: Repressed by the toxin-antitoxin system MqsR-MqsA; this
mRNA is degraded by mRNA interferase MqsR.
{ECO:0000269|PubMed:25534751}.
-!- DISRUPTION PHENOTYPE: Cells grow better in the presence of the
bile acid deoxycholate. Increased membrane stability when
incubated for 2 hours in the presence of 4.5% deoxycholate.
Increased cell survival in the presence of 20% deoxycholate.
{ECO:0000269|PubMed:25534751}.
-!- SIMILARITY: Belongs to the bacterial solute-binding protein 5
family. {ECO:0000305}.
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EMBL; U28377; AAA69188.1; -; Genomic_DNA.
EMBL; U00096; AAC76056.1; -; Genomic_DNA.
EMBL; AP009048; BAE77076.1; -; Genomic_DNA.
PIR; B65089; B65089.
RefSeq; NP_417492.1; NC_000913.3.
RefSeq; WP_001295629.1; NZ_LN832404.1.
ProteinModelPortal; Q46863; -.
SMR; Q46863; -.
BioGrid; 4259246; 6.
STRING; 316385.ECDH10B_3194; -.
TCDB; 3.A.1.5.41; the atp-binding cassette (abc) superfamily.
PaxDb; Q46863; -.
PRIDE; Q46863; -.
EnsemblBacteria; AAC76056; AAC76056; b3020.
EnsemblBacteria; BAE77076; BAE77076; BAE77076.
GeneID; 947140; -.
KEGG; ecj:JW2988; -.
KEGG; eco:b3020; -.
PATRIC; fig|1411691.4.peg.3710; -.
EchoBASE; EB2839; -.
EcoGene; EG13021; ygiS.
eggNOG; ENOG4108J59; Bacteria.
eggNOG; COG4166; LUCA.
HOGENOM; HOG000179191; -.
InParanoid; Q46863; -.
KO; K02035; -.
OMA; MAGWSIG; -.
PhylomeDB; Q46863; -.
BioCyc; EcoCyc:YGIS-MONOMER; -.
PRO; PR:Q46863; -.
Proteomes; UP000000318; Chromosome.
Proteomes; UP000000625; Chromosome.
GO; GO:0043190; C:ATP-binding cassette (ABC) transporter complex; IEA:InterPro.
GO; GO:0030288; C:outer membrane-bounded periplasmic space; IDA:EcoCyc.
GO; GO:0015197; F:peptide transporter activity; IBA:GO_Central.
GO; GO:0055085; P:transmembrane transport; IEA:InterPro.
InterPro; IPR030678; Peptide/Ni-bd.
InterPro; IPR000914; SBP_5_dom.
Pfam; PF00496; SBP_bac_5; 1.
PIRSF; PIRSF002741; MppA; 1.
1: Evidence at protein level;
Complete proteome; Periplasm; Reference proteome; Signal; Transport.
SIGNAL 1 20 {ECO:0000255}.
CHAIN 21 535 Probable deoxycholate-binding periplasmic
protein YgiS.
/FTId=PRO_0000031806.
SEQUENCE 535 AA; 60694 MW; B0F56723071A54EF CRC64;
MYTRNLLWLV SLVSAAPLYA ADVPANTPLA PQQVFRYNNH SDPGTLDPQK VEENTAAQIV
LDLFEGLVWM DGEGQVQPAQ AERWEILDGG KRYIFHLRSG LQWSDGQPLT AEDFVLGWQR
AVDPKTASPF AGYLAQAHIN NAAAIVAGKA DVTSLGVKAT DDRTLEVTLE QPVPWFTTML
AWPTLFPVPH HVIAKHGDSW SKPENMVYNG AFVLDQWVVN EKITARKNPK YRDAQHTVLQ
QVEYLALDNS VTGYNRYRAG EVDLTWVPAQ QIPAIEKSLP GELRIIPRLN SEYYNFNLEK
PPFNDVRVRR ALYLTVDRQL IAQKVLGLRT PATTLTPPEV KGFSATTFDE LQKPMSERVA
MAKALLKQAG YDASHPLRFE LFYNKYDLHE KTAIALSSEW KKWLGAQVTL RTMEWKTYLD
ARRAGDFMLS RQSWDATYND ASSFLNTLKS DSEENVGHWK NAQYDALLNQ ATQITDATKR
NALYQQAEVI INQQAPLIPI YYQPLIKLLK PYVGGFPLHN PQDYVYSKEL YIKAH


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