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Probable phospholipid-transporting ATPase VA (EC 3.6.3.1) (ATPase class V type 10A) (Aminophospholipid translocase VA) (P4-ATPase flippase complex alpha subunit ATP10A)

 AT10A_HUMAN             Reviewed;        1499 AA.
O60312; Q4G0S9; Q969I4;
30-MAY-2000, integrated into UniProtKB/Swiss-Prot.
13-AUG-2002, sequence version 2.
12-SEP-2018, entry version 181.
RecName: Full=Probable phospholipid-transporting ATPase VA;
EC=3.6.3.1;
AltName: Full=ATPase class V type 10A;
AltName: Full=Aminophospholipid translocase VA;
AltName: Full=P4-ATPase flippase complex alpha subunit ATP10A;
Name=ATP10A; Synonyms=ATP10C, ATPVA, ATPVC, KIAA0566;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), AND POSSIBLE INVOLVEMENT IN
AS.
PubMed=11326269; DOI=10.1038/88209;
Meguro M., Kashiwagi A., Mitsuya K., Nakao M., Kondo I., Saitoh S.,
Oshimura M.;
"A novel maternally expressed gene, ATP10C, encodes a putative
aminophospholipid translocase associated with Angelman syndrome.";
Nat. Genet. 28:19-20(2001).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
PubMed=11353404; DOI=10.1086/320616;
Herzing L.B.K., Kim S.-J., Cook E.H. Jr., Ledbetter D.H.;
"The human aminophospholipid-transporting ATPase gene ATP10C maps
adjacent to UBE3A and exhibits similar imprinted expression.";
Am. J. Hum. Genet. 68:1501-1505(2001).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=16572171; DOI=10.1038/nature04601;
Zody M.C., Garber M., Sharpe T., Young S.K., Rowen L., O'Neill K.,
Whittaker C.A., Kamal M., Chang J.L., Cuomo C.A., Dewar K.,
FitzGerald M.G., Kodira C.D., Madan A., Qin S., Yang X., Abbasi N.,
Abouelleil A., Arachchi H.M., Baradarani L., Birditt B., Bloom S.,
Bloom T., Borowsky M.L., Burke J., Butler J., Cook A., DeArellano K.,
DeCaprio D., Dorris L. III, Dors M., Eichler E.E., Engels R.,
Fahey J., Fleetwood P., Friedman C., Gearin G., Hall J.L., Hensley G.,
Johnson E., Jones C., Kamat A., Kaur A., Locke D.P., Madan A.,
Munson G., Jaffe D.B., Lui A., Macdonald P., Mauceli E., Naylor J.W.,
Nesbitt R., Nicol R., O'Leary S.B., Ratcliffe A., Rounsley S., She X.,
Sneddon K.M.B., Stewart S., Sougnez C., Stone S.M., Topham K.,
Vincent D., Wang S., Zimmer A.R., Birren B.W., Hood L., Lander E.S.,
Nusbaum C.;
"Analysis of the DNA sequence and duplication history of human
chromosome 15.";
Nature 440:671-675(2006).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
TISSUE=Skin, and Testis;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 337-1499 (ISOFORM 1).
TISSUE=Brain;
PubMed=9628581; DOI=10.1093/dnares/5.1.31;
Nagase T., Ishikawa K., Miyajima N., Tanaka A., Kotani H., Nomura N.,
Ohara O.;
"Prediction of the coding sequences of unidentified human genes. IX.
The complete sequences of 100 new cDNA clones from brain which can
code for large proteins in vitro.";
DNA Res. 5:31-39(1998).
[6]
SUBCELLULAR LOCATION.
PubMed=21914794; DOI=10.1074/jbc.M111.281006;
Takatsu H., Baba K., Shima T., Umino H., Kato U., Umeda M.,
Nakayama K., Shin H.W.;
"ATP9B, a P4-ATPase (a putative aminophospholipid translocase),
localizes to the trans-Golgi network in a CDC50 protein-independent
manner.";
J. Biol. Chem. 286:38159-38167(2011).
[7]
VARIANT TRP-208.
PubMed=26637798; DOI=10.1016/j.neuron.2015.11.009;
D'Gama A.M., Pochareddy S., Li M., Jamuar S.S., Reiff R.E., Lam A.T.,
Sestan N., Walsh C.A.;
"Targeted DNA Sequencing from Autism Spectrum Disorder Brains
Implicates Multiple Genetic Mechanisms.";
Neuron 88:910-917(2015).
-!- FUNCTION: Catalytic component of a P4-ATPase flippase complex
which catalyzes the hydrolysis of ATP coupled to the transport of
aminophospholipids from the outer to the inner leaflet of various
membranes and ensures the maintenance of asymmetric distribution
of phospholipids. Phospholipid translocation seems also to be
implicated in vesicle formation and in uptake of lipid signaling
molecules (Probable). {ECO:0000305}.
-!- CATALYTIC ACTIVITY: ATP + H(2)O + phospholipid(Side 1) = ADP +
phosphate + phospholipid(Side 2).
-!- SUBUNIT: Component of a P4-ATPase flippase complex which consists
of a catalytic alpha subunit and an accessory beta subunit.
{ECO:0000305}.
-!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000269|PubMed:21914794};
Multi-pass membrane protein {ECO:0000269|PubMed:21914794}.
Endoplasmic reticulum membrane {ECO:0000269|PubMed:21914794}.
Note=Exit from the endoplasmic reticulum requires the presence of
TMEM30A, but not that of TMEM30B.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=O60312-1; Sequence=Displayed;
Name=2;
IsoId=O60312-2; Sequence=VSP_056604, VSP_056605;
Note=No experimental confirmation available.;
-!- TISSUE SPECIFICITY: Widely expressed, with highest levels in
kidney, followed by lung, brain, prostate, testis, ovary and small
intestine.
-!- DISEASE: Angelman syndrome (AS) [MIM:105830]: A neurodevelopmental
disorder characterized by severe motor and intellectual
retardation, ataxia, frequent jerky limb movements and flapping of
the arms and hands, hypotonia, seizures, absence of speech,
frequent smiling and episodes of paroxysmal laughter, open-mouthed
expression revealing the tongue. {ECO:0000269|PubMed:11326269}.
Note=The gene represented in this entry may be involved in disease
pathogenesis.
-!- SIMILARITY: Belongs to the cation transport ATPase (P-type) (TC
3.A.3) family. Type IV subfamily. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; AB051358; BAB47392.1; -; mRNA.
EMBL; AY029504; AAK33100.1; -; Genomic_DNA.
EMBL; AY029487; AAK33100.1; JOINED; Genomic_DNA.
EMBL; AY029488; AAK33100.1; JOINED; Genomic_DNA.
EMBL; AY029489; AAK33100.1; JOINED; Genomic_DNA.
EMBL; AY029490; AAK33100.1; JOINED; Genomic_DNA.
EMBL; AY029491; AAK33100.1; JOINED; Genomic_DNA.
EMBL; AY029492; AAK33100.1; JOINED; Genomic_DNA.
EMBL; AY029493; AAK33100.1; JOINED; Genomic_DNA.
EMBL; AY029494; AAK33100.1; JOINED; Genomic_DNA.
EMBL; AY029495; AAK33100.1; JOINED; Genomic_DNA.
EMBL; AY029496; AAK33100.1; JOINED; Genomic_DNA.
EMBL; AY029497; AAK33100.1; JOINED; Genomic_DNA.
EMBL; AY029498; AAK33100.1; JOINED; Genomic_DNA.
EMBL; AY029499; AAK33100.1; JOINED; Genomic_DNA.
EMBL; AY029500; AAK33100.1; JOINED; Genomic_DNA.
EMBL; AY029501; AAK33100.1; JOINED; Genomic_DNA.
EMBL; AY029502; AAK33100.1; JOINED; Genomic_DNA.
EMBL; AY029503; AAK33100.1; JOINED; Genomic_DNA.
EMBL; AC016266; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AC023449; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; AC109512; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; BC052251; AAH52251.1; -; mRNA.
EMBL; BC038712; AAH38712.1; -; mRNA.
EMBL; AB011138; BAA25492.1; -; mRNA.
CCDS; CCDS32178.1; -. [O60312-1]
RefSeq; NP_077816.1; NM_024490.3. [O60312-1]
RefSeq; XP_005268318.1; XM_005268261.4. [O60312-1]
RefSeq; XP_011520128.1; XM_011521826.2. [O60312-1]
UniGene; Hs.638517; -.
UniGene; Hs.659258; -.
ProteinModelPortal; O60312; -.
BioGrid; 121443; 2.
STRING; 9606.ENSP00000349325; -.
iPTMnet; O60312; -.
PhosphoSitePlus; O60312; -.
BioMuta; ATP10A; -.
PaxDb; O60312; -.
PeptideAtlas; O60312; -.
PRIDE; O60312; -.
ProteomicsDB; 49339; -.
DNASU; 57194; -.
Ensembl; ENST00000356865; ENSP00000349325; ENSG00000206190. [O60312-1]
Ensembl; ENST00000389967; ENSP00000374617; ENSG00000206190. [O60312-2]
Ensembl; ENST00000619904; ENSP00000480665; ENSG00000206190. [O60312-2]
GeneID; 57194; -.
KEGG; hsa:57194; -.
UCSC; uc001zax.4; human. [O60312-1]
CTD; 57194; -.
DisGeNET; 57194; -.
EuPathDB; HostDB:ENSG00000206190.11; -.
GeneCards; ATP10A; -.
GeneReviews; ATP10A; -.
HGNC; HGNC:13542; ATP10A.
HPA; HPA041496; -.
HPA; HPA042509; -.
MalaCards; ATP10A; -.
MIM; 105830; phenotype.
MIM; 605855; gene.
neXtProt; NX_O60312; -.
OpenTargets; ENSG00000206190; -.
Orphanet; 72; Angelman syndrome.
PharmGKB; PA25097; -.
eggNOG; KOG0206; Eukaryota.
eggNOG; COG0474; LUCA.
GeneTree; ENSGT00910000144008; -.
HOGENOM; HOG000202528; -.
HOVERGEN; HBG107129; -.
InParanoid; O60312; -.
KO; K01530; -.
OMA; PHRDLMN; -.
OrthoDB; EOG091G0139; -.
PhylomeDB; O60312; -.
TreeFam; TF354252; -.
BRENDA; 3.6.3.1; 2681.
Reactome; R-HSA-936837; Ion transport by P-type ATPases.
GeneWiki; ATP10A; -.
GenomeRNAi; 57194; -.
PRO; PR:O60312; -.
Proteomes; UP000005640; Chromosome 15.
Bgee; ENSG00000206190; Expressed in 179 organ(s), highest expression level in oviduct epithelium.
CleanEx; HS_ATP10A; -.
ExpressionAtlas; O60312; baseline and differential.
Genevisible; O60312; HS.
GO; GO:0005783; C:endoplasmic reticulum; IDA:UniProtKB.
GO; GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.
GO; GO:0016021; C:integral component of membrane; NAS:UniProtKB.
GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0000287; F:magnesium ion binding; IEA:InterPro.
GO; GO:0004012; F:phospholipid-translocating ATPase activity; IBA:GO_Central.
GO; GO:0034220; P:ion transmembrane transport; TAS:Reactome.
GO; GO:0045332; P:phospholipid translocation; NAS:UniProtKB.
GO; GO:0008360; P:regulation of cell shape; NAS:UniProtKB.
Gene3D; 3.40.1110.10; -; 1.
InterPro; IPR030357; ATP10A/ATP10C.
InterPro; IPR023299; ATPase_P-typ_cyto_dom_N.
InterPro; IPR018303; ATPase_P-typ_P_site.
InterPro; IPR023298; ATPase_P-typ_TM_dom_sf.
InterPro; IPR008250; ATPase_P-typ_transduc_dom_A_sf.
InterPro; IPR036412; HAD-like_sf.
InterPro; IPR006539; P-type_ATPase_IV.
InterPro; IPR032631; P-type_ATPase_N.
InterPro; IPR001757; P_typ_ATPase.
InterPro; IPR032630; P_typ_ATPase_c.
PANTHER; PTHR24092; PTHR24092; 1.
PANTHER; PTHR24092:SF81; PTHR24092:SF81; 1.
Pfam; PF16212; PhoLip_ATPase_C; 1.
Pfam; PF16209; PhoLip_ATPase_N; 1.
SUPFAM; SSF56784; SSF56784; 2.
SUPFAM; SSF81653; SSF81653; 2.
SUPFAM; SSF81660; SSF81660; 1.
SUPFAM; SSF81665; SSF81665; 3.
TIGRFAMs; TIGR01652; ATPase-Plipid; 2.
TIGRFAMs; TIGR01494; ATPase_P-type; 2.
PROSITE; PS00154; ATPASE_E1_E2; 1.
2: Evidence at transcript level;
Alternative splicing; ATP-binding; Cell membrane; Complete proteome;
Endoplasmic reticulum; Hydrolase; Lipid transport; Magnesium;
Membrane; Metal-binding; Nucleotide-binding; Phosphoprotein;
Polymorphism; Reference proteome; Transmembrane; Transmembrane helix;
Transport.
CHAIN 1 1499 Probable phospholipid-transporting ATPase
VA.
/FTId=PRO_0000046379.
TOPO_DOM 1 86 Cytoplasmic. {ECO:0000255}.
TRANSMEM 87 106 Helical. {ECO:0000255}.
TOPO_DOM 107 110 Exoplasmic loop. {ECO:0000255}.
TRANSMEM 111 128 Helical. {ECO:0000255}.
TOPO_DOM 129 309 Cytoplasmic. {ECO:0000255}.
TRANSMEM 310 332 Helical. {ECO:0000255}.
TOPO_DOM 333 362 Exoplasmic loop. {ECO:0000255}.
TRANSMEM 363 384 Helical. {ECO:0000255}.
TOPO_DOM 385 1087 Cytoplasmic. {ECO:0000255}.
TRANSMEM 1088 1108 Helical. {ECO:0000255}.
TOPO_DOM 1109 1119 Exoplasmic loop. {ECO:0000255}.
TRANSMEM 1120 1140 Helical. {ECO:0000255}.
TOPO_DOM 1141 1170 Cytoplasmic. {ECO:0000255}.
TRANSMEM 1171 1192 Helical. {ECO:0000255}.
TOPO_DOM 1193 1199 Exoplasmic loop. {ECO:0000255}.
TRANSMEM 1200 1222 Helical. {ECO:0000255}.
TOPO_DOM 1223 1228 Cytoplasmic. {ECO:0000255}.
TRANSMEM 1229 1249 Helical. {ECO:0000255}.
TOPO_DOM 1250 1267 Exoplasmic loop. {ECO:0000255}.
TRANSMEM 1268 1292 Helical. {ECO:0000255}.
TOPO_DOM 1293 1499 Cytoplasmic. {ECO:0000255}.
COMPBIAS 467 470 Poly-Glu.
ACT_SITE 427 427 4-aspartylphosphate intermediate.
{ECO:0000250}.
METAL 1031 1031 Magnesium. {ECO:0000250}.
METAL 1035 1035 Magnesium. {ECO:0000250}.
MOD_RES 466 466 Phosphoserine.
{ECO:0000250|UniProtKB:O54827}.
VAR_SEQ 150 155 REEKKY -> SRSHLK (in isoform 2).
{ECO:0000303|PubMed:15489334}.
/FTId=VSP_056604.
VAR_SEQ 156 1499 Missing (in isoform 2).
{ECO:0000303|PubMed:15489334}.
/FTId=VSP_056605.
VARIANT 208 208 R -> W (found in a patient with autism
and Parkinson's disease; unknown
pathological significance;
dbSNP:rs763246380).
{ECO:0000269|PubMed:26637798}.
/FTId=VAR_078700.
VARIANT 353 353 S -> Y (in dbSNP:rs17116056).
/FTId=VAR_048380.
VARIANT 504 504 R -> H (in dbSNP:rs56724944).
/FTId=VAR_061038.
VARIANT 532 532 T -> M (in dbSNP:rs2066703).
/FTId=VAR_022004.
VARIANT 784 784 A -> T (in dbSNP:rs2066704).
/FTId=VAR_022005.
VARIANT 834 834 E -> K (in dbSNP:rs17555920).
/FTId=VAR_048381.
VARIANT 1172 1172 W -> C (in dbSNP:rs2076742).
/FTId=VAR_022006.
VARIANT 1179 1179 A -> T (in dbSNP:rs2076744).
/FTId=VAR_022007.
VARIANT 1188 1188 I -> V (in dbSNP:rs2076745).
/FTId=VAR_022008.
VARIANT 1198 1198 V -> M (in dbSNP:rs2076746).
/FTId=VAR_048382.
VARIANT 1298 1298 R -> S (in dbSNP:rs3816800).
/FTId=VAR_022009.
VARIANT 1397 1397 A -> V (in dbSNP:rs9324127).
/FTId=VAR_048383.
CONFLICT 388 388 Q -> R (in Ref. 5; BAA25492).
{ECO:0000305}.
SEQUENCE 1499 AA; 167688 MW; D4996A4D0635A68D CRC64;
MEREPAGTEE PGPPGRRRRR EGRTRTVRSN LLPPPGAEDP AAGAAKGERR RRRGCAQHLA
DNRLKTTKYT LLSFLPKNLF EQFHRPANVY FVFIALLNFV PAVNAFQPGL ALAPVLFILA
ITAFRDLWED YSRHRSDHKI NHLGCLVFSR EEKKYVNRFW KEIHVGDFVR LRCNEIFPAD
ILLLSSSDPD GLCHIETANL DGETNLKRRQ VVRGFSELVS EFNPLTFTSV IECEKPNNDL
SRFRGCIIHD NGKKAGLYKE NLLLRGCTLR NTDAVVGIVI YAGHETKALL NNSGPRYKRS
KLERQMNCDV LWCVLLLVCM SLFSAVGHGL WIWRYQEKKS LFYVPKSDGS SLSPVTAAVY
SFLTMIIVLQ VLIPISLYVS IEIVKACQVY FINQDMQLYD EETDSQLQCR ALNITEDLGQ
IQYIFSDKTG TLTENKMVFR RCTVSGVEYS HDANAQRLAR YQEADSEEEE VVPRGGSVSQ
RGSIGSHQSV RVVHRTQSTK SHRRTGSRAE AKRASMLSKH TAFSSPMEKD ITPDPKLLEK
VSECDKSLAV ARHQEHLLAH LSPELSDVFD FFIALTICNT VVVTSPDQPR TKVRVRFELK
SPVKTIEDFL RRFTPSCLTS GCSSIGSLAA NKSSHKLGSS FPSTPSSDGM LLRLEERLGQ
PTSAIASNGY SSQADNWASE LAQEQESERE LRYEAESPDE AALVYAARAY NCVLVERLHD
QVSVELPHLG RLTFELLHTL GFDSVRKRMS VVIRHPLTDE INVYTKGADS VVMDLLQPCS
SVDARGRHQK KIRSKTQNYL NVYAAEGLRT LCIAKRVLSK EEYACWLQSH LEAESSLENS
EELLFQSAIR LETNLHLLGA TGIEDRLQDG VPETISKLRQ AGLQIWVLTG DKQETAVNIA
YACKLLDHDE EVITLNATSQ EACAALLDQC LCYVQSRGLQ RAPEKTKGKV SMRFSSLCPP
STSTASGRRP SLVIDGRSLA YALEKNLEDK FLFLAKQCRS VLCCRSTPLQ KSMVVKLVRS
KLKAMTLAIG DGANDVSMIQ VADVGVGISG QEGMQAVMAS DFAVPKFRYL ERLLILHGHW
CYSRLANMVL YFFYKNTMFV GLLFWFQFFC GFSASTMIDQ WYLIFFNLLF SSLPPLVTGV
LDRDVPANVL LTNPQLYKSG QNMEEYRPRT FWFNMADAAF QSLVCFSIPY LAYYDSNVDL
FTWGTPIVTI ALLTFLLHLG IETKTWTWLN WITCGFSVLL FFTVALIYNA SCATCYPPSN
PYWTMQALLG DPVFYLTCLM TPVAALLPRL FFRSLQGRVF PTQLQLARQL TRKSPRRCSA
PKETFAQGRL PKDSGTEHSS GRTVKTSVPL SQPSWHTQQP VCSLEASGEP STVDMSMPVR
EHTLLEGLSA PAPMSSAPGE AVLRSPGGCP EESKVRAAST GRVTPLSSLF SLPTFSLLNW
ISSWSLVSRL GSVLQFSRTE QLADGQAGRG LPVQPHSGRS GLQGPDHRLL IGASSRRSQ


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