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Proline-rich receptor-like protein kinase PERK9 (EC 2.7.11.1) (Proline-rich extensin-like receptor kinase 9) (AtPERK9)

 PERK9_ARATH             Reviewed;         708 AA.
Q9SX31;
02-NOV-2010, integrated into UniProtKB/Swiss-Prot.
01-MAY-2000, sequence version 1.
25-APR-2018, entry version 121.
RecName: Full=Proline-rich receptor-like protein kinase PERK9;
EC=2.7.11.1;
AltName: Full=Proline-rich extensin-like receptor kinase 9;
Short=AtPERK9;
Name=PERK9; OrderedLocusNames=At1g68690; ORFNames=F24J5.8;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130712; DOI=10.1038/35048500;
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y.,
Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P.,
Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A.,
Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I.,
Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D.,
Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M.,
Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M.,
Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana.";
Nature 408:816-820(2000).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[4]
GENE FAMILY.
PubMed=12374299; DOI=10.1023/A:1019951120788;
Silva N.F., Goring D.R.;
"The proline-rich, extensin-like receptor kinase-1 (PERK1) gene is
rapidly induced by wounding.";
Plant Mol. Biol. 50:667-685(2002).
[5]
TISSUE SPECIFICITY, GENE FAMILY, AND NOMENCLATURE.
PubMed=15653807; DOI=10.1093/pcp/pch206;
Nakhamchik A., Zhao Z., Provart N.J., Shiu S.-H., Keatley S.K.,
Cameron R.K., Goring D.R.;
"A comprehensive expression analysis of the Arabidopsis proline-rich
extensin-like receptor kinase gene family using bioinformatic and
experimental approaches.";
Plant Cell Physiol. 45:1875-1881(2004).
[6]
INTERACTION WITH KIPK1 AND KIPK2, AND FUNCTION.
PubMed=25262228; DOI=10.1093/jxb/eru390;
Humphrey T.V., Haasen K.E., Aldea-Brydges M.G., Sun H., Zayed Y.,
Indriolo E., Goring D.R.;
"PERK-KIPK-KCBP signalling negatively regulates root growth in
Arabidopsis thaliana.";
J. Exp. Bot. 66:71-83(2015).
-!- FUNCTION: Could be involved in the negative regulation of root
growth. {ECO:0000269|PubMed:25262228}.
-!- CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
-!- SUBUNIT: Interacts with KIPK1 AND KIPK2 (via its cytosolic
domain). {ECO:0000269|PubMed:25262228}.
-!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000250}; Single-pass
membrane protein {ECO:0000250}.
-!- TISSUE SPECIFICITY: Mostly expressed in roots, inflorescence bolts
and flower buds. {ECO:0000269|PubMed:15653807}.
-!- SIMILARITY: Belongs to the protein kinase superfamily. Ser/Thr
protein kinase family. {ECO:0000255|PROSITE-ProRule:PRU00159}.
-!- WEB RESOURCE: Name=PlantP kinase Classification PPC;
URL="http://plantsp.genomics.purdue.edu/family/class.html";
-----------------------------------------------------------------------
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EMBL; AC008075; AAD49974.1; -; Genomic_DNA.
EMBL; CP002684; AEE34828.1; -; Genomic_DNA.
EMBL; CP002684; ANM58367.1; -; Genomic_DNA.
EMBL; CP002684; ANM58369.1; -; Genomic_DNA.
EMBL; AY035076; AAK59581.1; -; mRNA.
EMBL; AY113877; AAM44925.1; -; mRNA.
PIR; D96711; D96711.
RefSeq; NP_001320810.1; NM_001334373.1.
RefSeq; NP_001320812.1; NM_001334374.1.
RefSeq; NP_177036.1; NM_105541.3.
UniGene; At.11547; -.
ProteinModelPortal; Q9SX31; -.
SMR; Q9SX31; -.
BioGrid; 528025; 1.
IntAct; Q9SX31; 2.
STRING; 3702.AT1G68690.1; -.
PaxDb; Q9SX31; -.
EnsemblPlants; AT1G68690.1; AT1G68690.1; AT1G68690.
EnsemblPlants; AT1G68690.2; AT1G68690.2; AT1G68690.
EnsemblPlants; AT1G68690.3; AT1G68690.3; AT1G68690.
GeneID; 3767664; -.
Gramene; AT1G68690.1; AT1G68690.1; AT1G68690.
Gramene; AT1G68690.2; AT1G68690.2; AT1G68690.
Gramene; AT1G68690.3; AT1G68690.3; AT1G68690.
KEGG; ath:AT1G68690; -.
Araport; AT1G68690; -.
TAIR; locus:2026925; AT1G68690.
eggNOG; KOG1187; Eukaryota.
eggNOG; COG0515; LUCA.
InParanoid; Q9SX31; -.
OMA; EDNFDSR; -.
OrthoDB; EOG093609WD; -.
PhylomeDB; Q9SX31; -.
PRO; PR:Q9SX31; -.
Proteomes; UP000006548; Chromosome 1.
ExpressionAtlas; Q9SX31; baseline and differential.
Genevisible; Q9SX31; AT.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0019901; F:protein kinase binding; IPI:UniProtKB.
GO; GO:0004675; F:transmembrane receptor protein serine/threonine kinase activity; IBA:GO_Central.
GO; GO:0007166; P:cell surface receptor signaling pathway; IBA:GO_Central.
GO; GO:0006468; P:protein phosphorylation; IBA:GO_Central.
InterPro; IPR011009; Kinase-like_dom_sf.
InterPro; IPR000719; Prot_kinase_dom.
InterPro; IPR017441; Protein_kinase_ATP_BS.
InterPro; IPR008271; Ser/Thr_kinase_AS.
Pfam; PF00069; Pkinase; 1.
SMART; SM00220; S_TKc; 1.
SUPFAM; SSF56112; SSF56112; 1.
PROSITE; PS00107; PROTEIN_KINASE_ATP; 1.
PROSITE; PS50011; PROTEIN_KINASE_DOM; 1.
PROSITE; PS00108; PROTEIN_KINASE_ST; 1.
1: Evidence at protein level;
ATP-binding; Cell membrane; Complete proteome; Glycoprotein; Kinase;
Membrane; Nucleotide-binding; Reference proteome;
Serine/threonine-protein kinase; Transferase; Transmembrane;
Transmembrane helix.
CHAIN 1 708 Proline-rich receptor-like protein kinase
PERK9.
/FTId=PRO_0000400061.
TOPO_DOM 1 280 Extracellular. {ECO:0000255}.
TRANSMEM 281 301 Helical. {ECO:0000255}.
TOPO_DOM 302 708 Cytoplasmic. {ECO:0000255}.
DOMAIN 377 652 Protein kinase. {ECO:0000255|PROSITE-
ProRule:PRU00159}.
NP_BIND 383 391 ATP. {ECO:0000255|PROSITE-
ProRule:PRU00159}.
COMPBIAS 5 268 Pro-rich.
ACT_SITE 500 500 Proton acceptor. {ECO:0000255|PROSITE-
ProRule:PRU00159, ECO:0000255|PROSITE-
ProRule:PRU10027}.
BINDING 405 405 ATP. {ECO:0000255|PROSITE-
ProRule:PRU00159}.
CARBOHYD 25 25 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 269 269 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
CARBOHYD 272 272 N-linked (GlcNAc...) asparagine.
{ECO:0000255}.
SEQUENCE 708 AA; 75128 MW; AC0818E54B076328 CRC64;
MATTPVQPPV SNSPPVTSPP PPLNNATSPA TPPPVTSPLP PSAPPPNRAP PPPPPVTTSP
PPVANGAPPP PLPKPPESSS PPPQPVIPSP PPSTSPPPQP VIPSPPPSAS PPPALVPPLP
SSPPPPASVP PPRPSPSPPI LVRSPPPSVR PIQSPPPPPS DRPTQSPPPP SPPSPPSERP
TQSPPSPPSE RPTQSPPPPS PPSPPSDRPS QSPPPPPEDT KPQPPRRSPN SPPPTFSSPP
RSPPEILVPG SNNPSQNNPT LRPPLDAPNS TNNSGIGTGA VVGISVAVAL VVFTLFGIFV
WCLRKREKRL SAVSGGDVTP SPMSSTARSD SAFFRMQSSA PVGASKRSGS YQSQSGGLGN
SKALFSYEEL VKATNGFSQE NLLGEGGFGC VYKGILPDGR VVAVKQLKIG GGQGDREFKA
EVETLSRIHH RHLVSIVGHC ISGDRRLLIY DYVSNNDLYF HLHGEKSVLD WATRVKIAAG
AARGLAYLHE DCHPRIIHRD IKSSNILLED NFDARVSDFG LARLALDCNT HITTRVIGTF
GYMAPEYASS GKLTEKSDVF SFGVVLLELI TGRKPVDTSQ PLGDESLVEW ARPLISHAIE
TEEFDSLADP KLGGNYVESE MFRMIEAAGA CVRHLATKRP RMGQIVRAFE SLAAEDLTNG
MRLGESEVFN SAQQSAEIRL FRRMAFGSQN YSTDFFSHSS YNSRDANV


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