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Protein BASIC PENTACYSTEINE2 (AtBPC2) (GAGA-binding transcriptional activator BBR/BPC2)

 BPC2_ARATH              Reviewed;         279 AA.
Q9LDE2; Q2PQS1;
19-OCT-2011, integrated into UniProtKB/Swiss-Prot.
01-OCT-2000, sequence version 1.
12-SEP-2018, entry version 103.
RecName: Full=Protein BASIC PENTACYSTEINE2;
Short=AtBPC2;
AltName: Full=GAGA-binding transcriptional activator BBR/BPC2;
Name=BPC2; Synonyms=BBR/BPC2; OrderedLocusNames=At1g14685;
ORFNames=F10B6.5, F10B6_22, T5E21.17;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA].
STRAIN=cv. Shokei;
PubMed=12795701; DOI=10.1046/j.1365-313X.2003.01767.x;
Santi L., Wang Y., Stile M.R., Berendzen K.W., Wanke D., Roig C.,
Pozzi C., Mueller K., Mueller J., Rohde W., Salamini F.;
"The GA octodinucleotide repeat binding factor BBR participates in the
transcriptional regulation of the homeobox gene Bkn3.";
Plant J. 34:813-826(2003).
[2]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, DNA-BINDING, AND TISSUE
SPECIFICITY.
STRAIN=cv. Landsberg erecta;
PubMed=14731261; DOI=10.1046/j.1365-313X.2003.01971.x;
Meister R.J., Williams L.A., Monfared M.M., Gallagher T.L.,
Kraft E.A., Nelson C.G., Gasser C.S.;
"Definition and interactions of a positive regulatory element of the
Arabidopsis INNER NO OUTER promoter.";
Plant J. 37:426-438(2004).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130712; DOI=10.1038/35048500;
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S.,
White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y.,
Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W.,
Chung M.K., Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K.,
Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y.,
Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L.,
Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E.,
Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B.,
Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P.,
Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A.,
Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I.,
Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D.,
Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M.,
Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D.,
Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M.,
Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.;
"Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana.";
Nature 408:816-820(2000).
[4]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[6]
GENE FAMILY.
Bloss U., Hohenstatt M.L., Hummel S., Harter K., Wanke D.;
"The plant specific BPC/BBR family of GAGA-repeat binding proteins.";
(In) Proceedings of the 20th international conference on Arabidopsis
research, abstract#084, Edinburgh (2009).
[7]
DNA-BINDING.
PubMed=21108821; DOI=10.1186/1746-4811-6-25;
Brand L.H., Kirchler T., Hummel S., Chaban C., Wanke D.;
"DPI-ELISA: a fast and versatile method to specify the binding of
plant transcription factors to DNA in vitro.";
Plant Methods 6:25-25(2010).
[8]
TISSUE SPECIFICITY.
PubMed=21435046; DOI=10.1111/j.1365-313X.2011.04562.x;
Monfared M.M., Simon M.K., Meister R.J., Roig-Villanova I.,
Kooiker M., Colombo L., Fletcher J.C., Gasser C.S.;
"Overlapping and antagonistic activities of BASIC PENTACYSTEINE genes
affect a range of developmental processes in Arabidopsis.";
Plant J. 66:1020-1031(2011).
-!- FUNCTION: Transcriptional regulator that specifically binds to GA-
rich elements (GAGA-repeats) present in regulatory sequences of
genes involved in developmental processes.
{ECO:0000269|PubMed:14731261}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}.
-!- TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils.
Detected in the base of flowers and tips of carpels, in sepal and
petal vasculature, in pollen grains, in young rosette, in the
lateral and tip of primary roots, and in ovule at the exception of
the outer integument. {ECO:0000269|PubMed:14731261,
ECO:0000269|PubMed:21435046}.
-!- SIMILARITY: Belongs to the BBR/BPC family. {ECO:0000305}.
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EMBL; DQ307036; ABC25617.1; -; Genomic_DNA.
EMBL; DQ307037; ABC25618.1; -; mRNA.
EMBL; AY380568; AAR25822.1; -; mRNA.
EMBL; AC006917; AAF79219.1; -; Genomic_DNA.
EMBL; AC010657; AAF63172.1; -; Genomic_DNA.
EMBL; CP002684; AEE29202.1; -; Genomic_DNA.
EMBL; CP002684; AEE29203.1; -; Genomic_DNA.
EMBL; CP002684; AEE29204.1; -; Genomic_DNA.
EMBL; CP002684; ANM58904.1; -; Genomic_DNA.
EMBL; AY058073; AAL24181.1; -; mRNA.
EMBL; AY090305; AAL90966.1; -; mRNA.
RefSeq; NP_001321304.1; NM_001332132.1.
RefSeq; NP_563955.1; NM_101336.4.
RefSeq; NP_849662.1; NM_179331.3.
RefSeq; NP_973828.1; NM_202099.1.
UniGene; At.15024; -.
IntAct; Q9LDE2; 4.
STRING; 3702.AT1G14685.1; -.
PaxDb; Q9LDE2; -.
EnsemblPlants; AT1G14685.1; AT1G14685.1; AT1G14685.
EnsemblPlants; AT1G14685.2; AT1G14685.2; AT1G14685.
EnsemblPlants; AT1G14685.3; AT1G14685.3; AT1G14685.
EnsemblPlants; AT1G14685.4; AT1G14685.4; AT1G14685.
GeneID; 838031; -.
Gramene; AT1G14685.1; AT1G14685.1; AT1G14685.
Gramene; AT1G14685.2; AT1G14685.2; AT1G14685.
Gramene; AT1G14685.3; AT1G14685.3; AT1G14685.
Gramene; AT1G14685.4; AT1G14685.4; AT1G14685.
KEGG; ath:AT1G14685; -.
Araport; AT1G14685; -.
TAIR; locus:2823945; AT1G14685.
eggNOG; ENOG410IVD8; Eukaryota.
eggNOG; ENOG410YBIV; LUCA.
HOGENOM; HOG000241671; -.
InParanoid; Q9LDE2; -.
OMA; QEPPIHM; -.
OrthoDB; EOG09360I2Y; -.
PhylomeDB; Q9LDE2; -.
PRO; PR:Q9LDE2; -.
Proteomes; UP000006548; Chromosome 1.
ExpressionAtlas; Q9LDE2; baseline and differential.
Genevisible; Q9LDE2; AT.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0003700; F:DNA-binding transcription factor activity; IDA:UniProtKB.
GO; GO:0043565; F:sequence-specific DNA binding; IBA:GO_Central.
GO; GO:0050793; P:regulation of developmental process; IGI:TAIR.
GO; GO:0009723; P:response to ethylene; IGI:TAIR.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
InterPro; IPR010409; GAGA-bd_tscrpt_act.
PANTHER; PTHR31421; PTHR31421; 1.
Pfam; PF06217; GAGA_bind; 1.
SMART; SM01226; GAGA_bind; 1.
1: Evidence at protein level;
Complete proteome; DNA-binding; Nucleus; Reference proteome;
Transcription; Transcription regulation.
CHAIN 1 279 Protein BASIC PENTACYSTEINE2.
/FTId=PRO_0000413436.
COMPBIAS 151 161 Asn-rich.
VARIANT 151 151 N -> S (in strain: cv. Shokei).
VARIANT 161 161 N -> D (in strain: cv. Shokei).
SEQUENCE 279 AA; 31169 MW; BAB996037E04D372 CRC64;
MDDDGFRNWG YYEPAAATFK GNLGLQLMST IDRNTKPFLP GRDPNLMMGP NGSYHHQEPP
IHMSYNWINQ QKDKFFNMLP VTTATPNYGN VLPETSSAPS MQMNLHHHLQ TEENPVKLEE
EIVVQTKKRK TNAKAGSTPK AKKPRKPKDE NSNNNNNNNT NVTRVKPAKK SVDLVINGVS
MDISGLPVPI CTCTGAPQQC YRWGCGGWQS ACCTTNISMH PLPMSTKRRG ARISGRKMSQ
GAFKKVLEKL ASDGFNFGNP IDLKSHWARH GTNKFVTIR


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