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Protein CASPARIAN STRIP INTEGRITY FACTOR 2

 CIF2_ARATH              Reviewed;          83 AA.
O65684;
12-APR-2017, integrated into UniProtKB/Swiss-Prot.
01-AUG-1998, sequence version 1.
07-NOV-2018, entry version 118.
RecName: Full=Protein CASPARIAN STRIP INTEGRITY FACTOR 2 {ECO:0000303|PubMed:28104889};
Flags: Precursor;
Name=CIF2 {ECO:0000303|PubMed:28104889};
OrderedLocusNames=At4g34600 {ECO:0000312|Araport:AT4G34600};
ORFNames=T4L20.180 {ECO:0000312|EMBL:CAA18839.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617198; DOI=10.1038/47134;
Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G.,
Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N.,
Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M.,
Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M.,
Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T.,
Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I.,
Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P.,
Langham S.-A., McCullagh B., Bilham L., Robben J.,
van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F.,
Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E.,
Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W.,
Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P.,
Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H.,
De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R.,
van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S.,
Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R.,
Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S.,
Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H.,
Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S.,
Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A.,
Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R.,
Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S.,
Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E.,
Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A.,
Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T.,
Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C.,
Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S.,
Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K.,
Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L.,
Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J.,
Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J.,
Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D.,
Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D.,
Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C.,
Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C.,
Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R.,
Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S.,
Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A.,
Chen E., Marra M.A., Martienssen R., McCombie W.R.;
"Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana.";
Nature 402:769-777(1999).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Cheuk R.F., Chen H., Kim C.J., Shinn P., Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (MAY-2004) to the EMBL/GenBank/DDBJ databases.
[4]
FUNCTION, DISRUPTION PHENOTYPE, TISSUE SPECIFICITY, DEVELOPMENTAL
STAGE, INTERACTION WITH GSO1 AND GSO2, AND INDUCTION BY IRON.
PubMed=28104889; DOI=10.1126/science.aai9057;
Nakayama T., Shinohara H., Tanaka M., Baba K., Ogawa-Ohnishi M.,
Matsubayashi Y.;
"A peptide hormone required for Casparian strip diffusion barrier
formation in Arabidopsis roots.";
Science 355:284-286(2017).
-!- FUNCTION: Peptide hormone required for contiguous Casparian strip
diffusion barrier formation in roots via the regulation of CASPs
protein expression and distribution in a GSO1-GSO2 signaling
pathway. The Casparian strip is required for ion homeostasis (e.g.
iron and potassium ions). {ECO:0000269|PubMed:28104889}.
-!- SUBUNIT: Interacts with the specific receptor kinases GSO1 and
GSO2. {ECO:0000269|PubMed:28104889}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=1;
Comment=Additional isoforms seem to exist.
{ECO:0000312|Araport:AT4G34600};
Name=1;
IsoId=O65684-1; Sequence=Displayed;
-!- TISSUE SPECIFICITY: Expressed exclusively in the root stele.
{ECO:0000269|PubMed:28104889}.
-!- DEVELOPMENTAL STAGE: Confined to the root stele in the elongation
and differentiation zones of both primary and lateral roots.
Disappears at the sites of lateral root initiation. In the root
tip, present at and above approximately 10 cells after the onset
of elongation. {ECO:0000269|PubMed:28104889}.
-!- INDUCTION: Induced by excess iron and further synergistically
regulated by lowering the medium pH.
{ECO:0000269|PubMed:28104889}.
-!- DISRUPTION PHENOTYPE: Abnormal endodermal barrier formation in
cif2-1. The double mutant cif1-1 cif2-1 is defective in ion
homeostasis in the xylem due to defect in endodermal barrier
formation in the roots. Highly sensitive to excess iron. Retarded
growth under low-potassium conditions. Repeatedly interrupted,
discontinuous Casparian strip due to patch-like localization of
the CASPs proteins. Reduced rosette leaf size.
{ECO:0000269|PubMed:28104889}.
-----------------------------------------------------------------------
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EMBL; AL023094; CAA18839.1; -; Genomic_DNA.
EMBL; AL161585; CAB80177.1; -; Genomic_DNA.
EMBL; CP002687; AEE86398.1; -; Genomic_DNA.
EMBL; BT010809; AAR24176.1; -; mRNA.
EMBL; BT014676; AAT35234.1; -; mRNA.
PIR; T05280; T05280.
RefSeq; NP_195186.1; NM_119626.4. [O65684-1]
UniGene; At.27648; -.
UniGene; At.75091; -.
STRING; 3702.AT4G34600.1; -.
PaxDb; O65684; -.
EnsemblPlants; AT4G34600.1; AT4G34600.1; AT4G34600. [O65684-1]
GeneID; 829612; -.
Gramene; AT4G34600.1; AT4G34600.1; AT4G34600. [O65684-1]
KEGG; ath:AT4G34600; -.
Araport; AT4G34600; -.
TAIR; locus:2139604; AT4G34600.
eggNOG; ENOG410J5ER; Eukaryota.
eggNOG; ENOG410ZFRP; LUCA.
HOGENOM; HOG000237739; -.
InParanoid; O65684; -.
OMA; MRDYGKY; -.
OrthoDB; EOG09360WYZ; -.
PhylomeDB; O65684; -.
PRO; PR:O65684; -.
Proteomes; UP000006548; Chromosome 4.
ExpressionAtlas; O65684; baseline and differential.
GO; GO:0048226; C:Casparian strip; IMP:UniProtKB.
GO; GO:0005179; F:hormone activity; IEA:UniProtKB-KW.
GO; GO:0071555; P:cell wall organization; IEA:UniProtKB-KW.
GO; GO:0050801; P:ion homeostasis; IMP:UniProtKB.
GO; GO:0055072; P:iron ion homeostasis; IMP:UniProtKB.
GO; GO:0007275; P:multicellular organism development; IEA:UniProtKB-KW.
GO; GO:0009860; P:pollen tube growth; IEP:TAIR.
GO; GO:2000067; P:regulation of root morphogenesis; IMP:UniProtKB.
GO; GO:0010447; P:response to acidic pH; IEP:UniProtKB.
GO; GO:0010039; P:response to iron ion; IEP:UniProtKB.
InterPro; IPR038974; CIF1/2.
PANTHER; PTHR35290; PTHR35290; 1.
1: Evidence at protein level;
Alternative splicing; Cell wall biogenesis/degradation;
Complete proteome; Developmental protein; Hormone; Hydroxylation;
Reference proteome; Signal; Sulfation.
SIGNAL 1 28 {ECO:0000255}.
CHAIN 29 83 Protein CASPARIAN STRIP INTEGRITY FACTOR
2.
/FTId=PRO_5009340946.
MOD_RES 64 64 Sulfotyrosine.
{ECO:0000250|UniProtKB:Q84MD2}.
MOD_RES 69 69 Hydroxyproline.
{ECO:0000250|UniProtKB:Q84MD2}.
MOD_RES 71 71 Hydroxyproline.
{ECO:0000250|UniProtKB:Q84MD2}.
SEQUENCE 83 AA; 9437 MW; 6AA23972D835DA13 CRC64;
MGLLPLVKKL GFIIFLLVSA SAFALCSAGR SSILIYSQED DHPEVVERRI HEHERILRMN
SRDYGHSSPK PKLVRPPFKL IPN


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