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Protein CUP-SHAPED COTYLEDON 2 (NAC domain-containing protein 98) (ANAC098) (NAC domain-containing protein CUC2)

 NAC98_ARATH             Reviewed;         375 AA.
O04017;
04-DEC-2007, integrated into UniProtKB/Swiss-Prot.
01-JUL-1997, sequence version 1.
25-APR-2018, entry version 104.
RecName: Full=Protein CUP-SHAPED COTYLEDON 2;
AltName: Full=NAC domain-containing protein 98;
Short=ANAC098;
AltName: Full=NAC domain-containing protein CUC2;
Name=NAC098; Synonyms=CUC2; OrderedLocusNames=At5g53950;
ORFNames=K19P17.12;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND TISSUE SPECIFICITY.
STRAIN=cv. Columbia;
PubMed=9212461; DOI=10.1105/tpc.9.6.841;
Aida M., Ishida T., Fukaki H., Fujisawa H., Tasaka M.;
"Genes involved in organ separation in Arabidopsis: an analysis of the
cup-shaped cotyledon mutant.";
Plant Cell 9:841-857(1997).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=9501997; DOI=10.1093/dnares/4.6.401;
Nakamura Y., Sato S., Kaneko T., Kotani H., Asamizu E., Miyajima N.,
Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. III.
Sequence features of the regions of 1,191,918 bp covered by seventeen
physically assigned P1 clones.";
DNA Res. 4:401-414(1997).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Bautista V.R., Kim C.J., Chen H., Wu S.Y., De Los Reyes C.,
Ecker J.R.;
"Arabidopsis ORF clones.";
Submitted (JAN-2007) to the EMBL/GenBank/DDBJ databases.
[5]
FUNCTION, AND DEVELOPMENTAL STAGE.
PubMed=10079219;
Aida M., Ishida T., Tasaka M.;
"Shoot apical meristem and cotyledon formation during Arabidopsis
embryogenesis: interaction among the CUP-SHAPED COTYLEDON and SHOOT
MERISTEMLESS genes.";
Development 126:1563-1570(1999).
[6]
FUNCTION, TISSUE SPECIFICITY, AND DEVELOPMENTAL STAGE.
PubMed=10750709; DOI=10.1093/pcp/41.1.60;
Ishida T., Aida M., Takada S., Tasaka M.;
"Involvement of CUP-SHAPED COTYLEDON genes in gynoecium and ovule
development in Arabidopsis thaliana.";
Plant Cell Physiol. 41:60-67(2000).
[7]
FUNCTION.
PubMed=12163400;
Aida M., Vernoux T., Furutani M., Traas J., Tasaka M.;
"Roles of PIN-FORMED1 and MONOPTEROS in pattern formation of the
apical region of the Arabidopsis embryo.";
Development 129:3965-3974(2002).
[8]
FUNCTION.
PubMed=12492830; DOI=10.1046/j.1365-313X.2002.01479.x;
Cary A.J., Che P., Howell S.H.;
"Developmental events and shoot apical meristem gene expression
patterns during shoot development in Arabidopsis thaliana.";
Plant J. 32:867-877(2002).
[9]
GENE FAMILY, AND NOMENCLATURE.
PubMed=15029955; DOI=10.1093/dnares/10.6.239;
Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K.,
Matsubara K., Osato N., Kawai J., Carninci P., Hayashizaki Y.,
Suzuki K., Kojima K., Takahara Y., Yamamoto K., Kikuchi S.;
"Comprehensive analysis of NAC family genes in Oryza sativa and
Arabidopsis thaliana.";
DNA Res. 10:239-247(2003).
[10]
FUNCTION.
PubMed=12610213; DOI=10.1093/pcp/pcg038;
Daimon Y., Takabe K., Tasaka M.;
"The CUP-SHAPED COTYLEDON genes promote adventitious shoot formation
on calli.";
Plant Cell Physiol. 44:113-121(2003).
[11]
FUNCTION, AND INDUCTION BY MIR164.
PubMed=15202996; DOI=10.1016/j.cub.2004.06.022;
Mallory A.C., Dugas D.V., Bartel D.P., Bartel B.;
"MicroRNA regulation of NAC-domain targets is required for proper
formation and separation of adjacent embryonic, vegetative, and floral
organs.";
Curr. Biol. 14:1035-1046(2004).
[12]
FUNCTION, AND INDUCTION BY MIR164.
PubMed=15294871; DOI=10.1242/dev.01320;
Laufs P., Peaucelle A., Morin H., Traas J.;
"MicroRNA regulation of the CUC genes is required for boundary size
control in Arabidopsis meristems.";
Development 131:4311-4322(2004).
[13]
FUNCTION, MUTAGENESIS OF TRP-373 AND TYR-375, DOMAIN, TRANSACTIVATING
REGION, AND SUBCELLULAR LOCATION.
PubMed=15500463; DOI=10.1111/j.1365-313X.2004.02238.x;
Taoka K., Yanagimoto Y., Daimon Y., Hibara K., Aida M., Tasaka M.;
"The NAC domain mediates functional specificity of CUP-SHAPED
COTYLEDON proteins.";
Plant J. 40:462-473(2004).
[14]
TISSUE SPECIFICITY.
PubMed=15053771; DOI=10.1111/j.1365-313X.2004.02026.x;
Breuil-Broyer S., Morel P., de Almeida-Engler J., Coustham V.,
Negrutiu I., Trehin C.;
"High-resolution boundary analysis during Arabidopsis thaliana flower
development.";
Plant J. 38:182-192(2004).
[15]
FUNCTION, AND INDUCTION BY MIR164.
PubMed=15723790; DOI=10.1016/j.cub.2005.02.017;
Baker C.C., Sieber P., Wellmer F., Meyerowitz E.M.;
"The early extra petals1 mutant uncovers a role for microRNA miR164c
in regulating petal number in Arabidopsis.";
Curr. Biol. 15:303-315(2005).
[16]
INDUCTION BY BRM AND SYD.
PubMed=16854978; DOI=10.1242/dev.02508;
Kwon C.S., Hibara K., Pfluger J., Bezhani S., Metha H., Aida M.,
Tasaka M., Wagner D.;
"A role for chromatin remodeling in regulation of CUC gene expression
in the Arabidopsis cotyledon boundary.";
Development 133:3223-3230(2006).
[17]
FUNCTION.
PubMed=16798887; DOI=10.1105/tpc.106.041988;
Belles-Boix E., Hamant O., Witiak S.M., Morin H., Traas J., Pautot V.;
"KNAT6: an Arabidopsis homeobox gene involved in meristem activity and
organ separation.";
Plant Cell 18:1900-1907(2006).
[18]
FUNCTION, AND DEVELOPMENTAL STAGE.
PubMed=17098808; DOI=10.1105/tpc.106.045617;
Nikovics K., Blein T., Peaucelle A., Ishida T., Morin H., Aida M.,
Laufs P.;
"The balance between the MIR164A and CUC2 genes controls leaf margin
serration in Arabidopsis.";
Plant Cell 18:2929-2945(2006).
[19]
FUNCTION.
PubMed=17122068; DOI=10.1105/tpc.106.045716;
Hibara K., Karim M.R., Takada S., Taoka K., Furutani M., Aida M.,
Tasaka M.;
"Arabidopsis CUP-SHAPED COTYLEDON3 regulates postembryonic shoot
meristem and organ boundary formation.";
Plant Cell 18:2946-2957(2006).
[20]
FUNCTION, DEVELOPMENTAL STAGE, AND INDUCTION BY MIR164.
PubMed=17251269; DOI=10.1242/dev.02774;
Peaucelle A., Morin H., Traas J., Laufs P.;
"Plants expressing a miR164-resistant CUC2 gene reveal the importance
of post-meristematic maintenance of phyllotaxy in Arabidopsis.";
Development 134:1045-1050(2007).
[21]
FUNCTION, AND INDUCTION BY MIR164.
PubMed=17287247; DOI=10.1242/dev.02817;
Sieber P., Wellmer F., Gheyselinck J., Riechmann J.L.,
Meyerowitz E.M.;
"Redundancy and specialization among plant microRNAs: role of the
MIR164 family in developmental robustness.";
Development 134:1051-1060(2007).
-!- FUNCTION: Transcription activator of STM and KNAT6. Involved in
molecular mechanisms regulating shoot apical meristem (SAM)
formation during embryogenesis and organ separation. Required for
the fusion of septa of gynoecia along the length of the ovaries.
Activates the shoot formation in callus in a STM-dependent manner.
Controls leaf margin development and required for leaf serration.
Involved in axillary meristem initiation and separation of the
meristem from the main stem. Regulates the phyllotaxy throughout
the plant development. Seems to act as an inhibitor of cell
division. {ECO:0000269|PubMed:10079219,
ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400,
ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213,
ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871,
ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790,
ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808,
ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269,
ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}.
-!- INTERACTION:
Q9SFV2:FHA2; NbExp=3; IntAct=EBI-1998502, EBI-15191747;
O82277:TCP10; NbExp=3; IntAct=EBI-1998502, EBI-3133327;
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000255|PROSITE-
ProRule:PRU00353, ECO:0000269|PubMed:15500463}.
-!- TISSUE SPECIFICITY: Mostly expressed in buds and flowers, and, to
a lower extent, in the aerial parts of seedling, inflorescence and
old silique. In a general manner, present at the boundaries
between mersitems and araising primordia.
{ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:15053771,
ECO:0000269|PubMed:9212461}.
-!- DEVELOPMENTAL STAGE: First expressed in early to mid-globular-
stage embryos. In late globular stage, detected as a stripe
running medially across the top of the embryo. In heart stage
embryo, expression is restricted to a stripe between the cotyledon
primordia, but confined to hypodermal cells. In the bending-
cotyledon stage, localized in a region surrounding the SAM, that
correspond to the boundary region of cotyledon margins (BCM) and
the boundaries between SAM and cotyledons, including protoderm
cells. Observed in the margins of leaf primordia, and later
restricted to the leaf sinus region, with a diminution in
outgrowing teeth. Restricted to the proximal part of mature
leaves. Expressed at the boundaries between the inflorescence
meristem (IM) and flower primordia. Once the flower starts to grow
out and the internode begin to elongates, restricted to the axils
of the floral pedicels through several nodes. Detected within
floral primordia, between sepal primordia and the floral meristem.
Also present at the boundaries of individual sepal primordia, as
well as in the region surrounding each petal and stamen
primordium. Later detected transiently at the boundaries between
locules of each theca in anthers. Expression at the inner part of
presumtive septal regions that raises to include presumptive
placenta, at the tips of septal primordia, as septum grow.
Localized in the fused region of the septum. Found at the
boundaries of ovule primordia, and later at the boundary between
the nucellus and the chalaza. {ECO:0000269|PubMed:10079219,
ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:17098808,
ECO:0000269|PubMed:17251269}.
-!- INDUCTION: By BRM and SYD, at the chromatin level, and conferring
a very specific spatial expression pattern. Precise spatial
regulation by post-transcriptional repression directed by the
microRNA miR164. {ECO:0000269|PubMed:15202996,
ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790,
ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269,
ECO:0000269|PubMed:17287247}.
-!- DOMAIN: The NAC domain includes a DNA-binding domain and a
dimerization domain, and confers the specificity of the
transactivated target genes. {ECO:0000269|PubMed:15500463}.
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; AB002560; BAA19529.1; -; Genomic_DNA.
EMBL; AB007644; BAB10725.1; -; Genomic_DNA.
EMBL; CP002688; AED96432.1; -; Genomic_DNA.
EMBL; BT030026; ABN04764.1; -; mRNA.
RefSeq; NP_200206.1; NM_124774.3.
UniGene; At.55538; -.
ProteinModelPortal; O04017; -.
BioGrid; 20722; 8.
IntAct; O04017; 25.
STRING; 3702.AT5G53950.1; -.
PaxDb; O04017; -.
PRIDE; O04017; -.
EnsemblPlants; AT5G53950.1; AT5G53950.1; AT5G53950.
GeneID; 835478; -.
Gramene; AT5G53950.1; AT5G53950.1; AT5G53950.
KEGG; ath:AT5G53950; -.
Araport; AT5G53950; -.
TAIR; locus:2154684; AT5G53950.
eggNOG; ENOG410IVB7; Eukaryota.
eggNOG; ENOG410Y9VP; LUCA.
HOGENOM; HOG000237406; -.
InParanoid; O04017; -.
OMA; NYWLPAT; -.
OrthoDB; EOG09360FRZ; -.
PhylomeDB; O04017; -.
PRO; PR:O04017; -.
Proteomes; UP000006548; Chromosome 5.
ExpressionAtlas; O04017; baseline and differential.
Genevisible; O04017; AT.
GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
GO; GO:0003700; F:DNA binding transcription factor activity; ISS:TAIR.
GO; GO:0090691; P:formation of plant organ boundary; IGI:TAIR.
GO; GO:0048366; P:leaf development; IMP:TAIR.
GO; GO:0010072; P:primary shoot apical meristem specification; IGI:TAIR.
GO; GO:0090709; P:regulation of timing of plant organ formation; IMP:TAIR.
GO; GO:0010223; P:secondary shoot formation; IMP:TAIR.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
Gene3D; 3.30.310.150; -; 1.
InterPro; IPR003441; NAC-dom.
InterPro; IPR036093; NAC_dom_sf.
Pfam; PF02365; NAM; 1.
SUPFAM; SSF101941; SSF101941; 1.
PROSITE; PS51005; NAC; 1.
1: Evidence at protein level;
Complete proteome; Developmental protein; DNA-binding; Nucleus;
Reference proteome; Transcription; Transcription regulation.
CHAIN 1 375 Protein CUP-SHAPED COTYLEDON 2.
/FTId=PRO_0000312287.
DOMAIN 17 169 NAC. {ECO:0000255|PROSITE-
ProRule:PRU00353}.
DNA_BIND 116 175 {ECO:0000255|PROSITE-ProRule:PRU00353}.
REGION 210 247 Involved in transactivation activity.
REGION 373 375 Involved in transactivation activity.
MUTAGEN 373 373 W->A: Loss of transactivation activity.
when associated with A-373.
{ECO:0000269|PubMed:15500463}.
MUTAGEN 375 375 Y->A: Loss of transactivation activity.
when associated with A-371.
{ECO:0000269|PubMed:15500463}.
SEQUENCE 375 AA; 41434 MW; DA2E8AD98F83D11B CRC64;
MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA EVDLNKCEPW
QLPGRAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA TGKDREIFSS KTCALVGMKK
TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLASTGAVSE
GGGGGGATVS VSSGTGPSKK TKVPSTISRN YQEQPSSPSS VSLPPLLDPT TTLGYTDSSC
SYDSRSTNTT VTASAITEHV SCFSTVPTTT TALGLDVNSF SRLPPPLGFD FDPFPRFVSR
NVSTQSNFRS FQENFNQFPY FGSSSASTMT SAVNLPSFQG GGGVSGMNYW LPATAEENES
KVGVLHAGLD CIWNY


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