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Protein DECREASED SIZE EXCLUSION LIMIT 1 (AtDSE1) (Protein ALUMINUM TOLERANT 2) (Protein EMBRYO DEFECTIVE 2757) (Protein TANMEI)

 DSE1_ARATH              Reviewed;         386 AA.
Q3MV14; Q8GW99; Q9SZQ7;
29-APR-2015, integrated into UniProtKB/Swiss-Prot.
25-OCT-2005, sequence version 1.
25-OCT-2017, entry version 106.
RecName: Full=Protein DECREASED SIZE EXCLUSION LIMIT 1 {ECO:0000303|PubMed:22411811};
Short=AtDSE1 {ECO:0000303|PubMed:22411811};
AltName: Full=Protein ALUMINUM TOLERANT 2 {ECO:0000303|PubMed:22345493};
AltName: Full=Protein EMBRYO DEFECTIVE 2757 {ECO:0000303|PubMed:15266054};
AltName: Full=Protein TANMEI {ECO:0000303|PubMed:16113228};
Name=DSE1 {ECO:0000303|PubMed:22411811};
Synonyms=ALT2 {ECO:0000303|PubMed:22345493},
EMB2757 {ECO:0000303|PubMed:15266054},
TAN {ECO:0000303|PubMed:16113228};
OrderedLocusNames=At4g29860 {ECO:0000312|Araport:AT4G29860};
ORFNames=F27B13.100 {ECO:0000312|EMBL:CAB43661.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702 {ECO:0000312|EMBL:BAE44475.1};
[1]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, DISRUPTION PHENOTYPE, TISSUE
SPECIFICITY, AND DEVELOPMENTAL STAGE.
STRAIN=cv. Columbia, and cv. Wassilewskija;
PubMed=16113228; DOI=10.1104/pp.105.060467;
Yamagishi K., Nagata N., Yee K.M., Braybrook S.A., Pelletier J.,
Fujioka S., Yoshida S., Fischer R.L., Goldberg R.B., Harada J.J.;
"TANMEI/EMB2757 encodes a WD repeat protein required for embryo
development in Arabidopsis.";
Plant Physiol. 139:163-173(2005).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617198; DOI=10.1038/47134;
Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G.,
Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N.,
Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M.,
Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M.,
Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T.,
Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I.,
Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P.,
Langham S.-A., McCullagh B., Bilham L., Robben J.,
van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F.,
Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E.,
Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W.,
Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P.,
Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H.,
De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R.,
van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S.,
Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R.,
Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S.,
Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H.,
Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S.,
Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A.,
Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R.,
Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S.,
Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E.,
Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A.,
Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T.,
Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C.,
Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S.,
Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K.,
Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L.,
Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J.,
Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J.,
Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D.,
Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D.,
Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C.,
Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C.,
Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R.,
Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S.,
Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A.,
Chen E., Marra M.A., Martienssen R., McCombie W.R.;
"Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana.";
Nature 402:769-777(1999).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=11910074; DOI=10.1126/science.1071006;
Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M.,
Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T.,
Shibata K., Shinagawa A., Shinozaki K.;
"Functional annotation of a full-length Arabidopsis cDNA collection.";
Science 296:141-145(2002).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases.
[6]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=15266054; DOI=10.1104/pp.104.045179;
Tzafrir I., Pena-Muralla R., Dickerman A., Berg M., Rogers R.,
Hutchens S., Sweeney T.C., McElver J., Aux G., Patton D., Meinke D.;
"Identification of genes required for embryo development in
Arabidopsis.";
Plant Physiol. 135:1206-1220(2004).
[7]
FUNCTION, DISRUPTION PHENOTYPE, MUTAGENESIS OF GLY-213 AND GLY-340,
TISSUE SPECIFICITY, AND SUBCELLULAR LOCATION.
STRAIN=cv. Columbia;
PubMed=22345493; DOI=10.1105/tpc.112.095596;
Nezames C.D., Sjogren C.A., Barajas J.F., Larsen P.B.;
"The Arabidopsis cell cycle checkpoint regulators TANMEI/ALT2 and ATR
mediate the active process of aluminum-dependent root growth
inhibition.";
Plant Cell 24:608-621(2012).
[8]
FUNCTION, DISRUPTION PHENOTYPE, SUBCELLULAR LOCATION, TISSUE
SPECIFICITY, AND DEVELOPMENTAL STAGE.
STRAIN=cv. Landsberg erecta;
PubMed=22411811; DOI=10.1073/pnas.1202919109;
Xu M., Cho E., Burch-Smith T.M., Zambryski P.C.;
"Plasmodesmata formation and cell-to-cell transport are reduced in
decreased size exclusion limit 1 during embryogenesis in
Arabidopsis.";
Proc. Natl. Acad. Sci. U.S.A. 109:5098-5103(2012).
-!- FUNCTION: Involved in the formation of X-, Y-shaped and twinned
plasmodesmata (PD), thus modelating PD size exclusion limit and
regulating cell-to-cell transport (PubMed:22411811). Cell cycle
checkpoint regulator that monitors and responds to DNA damage such
as DNA cross-links, and triggers the halt of the cell cycle
progression in the presence of DNA cross-linking agents. Mediates
the active process of aluminum- (Al) dependent root growth
inhibition and thus is required for response to Al toxicity
(PubMed:22345493). Required for both early and late phases of
embryo development as well as during seedling growth
(PubMed:16113228, PubMed:15266054). Essential for signal
transduction and development of both male and female organs
(PubMed:22411811). {ECO:0000269|PubMed:15266054,
ECO:0000269|PubMed:16113228, ECO:0000269|PubMed:22345493,
ECO:0000269|PubMed:22411811}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:22345493,
ECO:0000269|PubMed:22411811}. Nucleus
{ECO:0000269|PubMed:22345493, ECO:0000269|PubMed:22411811}.
Note=Translocates from the cytoplasm to the nucleus in response to
DNA damage mediated by treatment with AlCl(3), mitomycin C (MMC),
or cisplatin (CDDP). {ECO:0000269|PubMed:22345493}.
-!- TISSUE SPECIFICITY: Expressed at low levels in floral buds,
leaves, stems, roots, and siliques, highest levels being in
siliques that contain developing seeds.
{ECO:0000269|PubMed:16113228, ECO:0000269|PubMed:22345493,
ECO:0000269|PubMed:22411811}.
-!- DEVELOPMENTAL STAGE: Accumulates throughout the embryo and in
endosperm (PubMed:16113228). Expressed throughout the plant life
cycle, from embryogenesis to seed set. Accumulates in the shoot
apex. In roots, confined to the vascular system. In anthers,
observed when the filaments start to elongate, and remain
expressed in later stages. Constitutively expressed in gynoecia
(PubMed:22411811). {ECO:0000269|PubMed:16113228,
ECO:0000269|PubMed:22411811}.
-!- DISRUPTION PHENOTYPE: Defects in both embryo and seedling
development, and pale yellow seeds. Die as embryos, probably
because of intolerance to desiccation and abnormal protein and
lipid body accumulation in mature seeds, but immature mutant seeds
can be germinated in culture and lead to short life seedlings
defective in shoot and root development, with reduced hypocotyls
elongation in the dark (PubMed:16113228, PubMed:15266054).
Seedlings accumulate less anthocyanin, are intolerant to
desiccation, form trichomes on cotyledons, and have reduced
accumulation of storage proteins and lipids (PubMed:16113228).
Suppressor of the aluminum- (Al) hypersensitive mutant als3-1 that
fails to halt root growth after Al exposure, does not accumulate
CyclinB1;1 in the root tip, and fails to force differentiation of
the quiescent center and is thus highly tolerant to high Al levels
(PubMed:22345493). In dse1, reduced plasmodesmata (PD) formation
and cell-to-cell transport during embryogenesis, due to reduced PD
size exclusion limit. Dse1 embryos are developmentally retarded
and accumulate anthocyanin at the junction between the cotyledons
and hypocotyls, corresponding to the shoot apical meristem (SAM).
Reduced apical dominance leading to the production of small
abnormal flowers, often with altered organ numbers. Infertility
due in part to the abnormal development of stamen with under-
extended anther filaments that don't release pollen, and due in
part to abnormal ovules lacking pollen attractiveness
(PubMed:22411811). {ECO:0000269|PubMed:15266054,
ECO:0000269|PubMed:16113228, ECO:0000269|PubMed:22345493,
ECO:0000269|PubMed:22411811}.
-!- MISCELLANEOUS: 'Tanmei' means short life in Japanese.
{ECO:0000303|PubMed:16113228}.
-!- SIMILARITY: Belongs to the plant DSE1 protein family.
{ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=BAC43565.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};
Sequence=BAC43565.1; Type=Frameshift; Positions=36; Evidence={ECO:0000305};
Sequence=BAD44334.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};
Sequence=BAD44334.1; Type=Frameshift; Positions=36; Evidence={ECO:0000305};
Sequence=CAB43661.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Sequence=CAB79744.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
-----------------------------------------------------------------------
EMBL; AB191306; BAE44475.1; -; mRNA.
EMBL; AL050352; CAB43661.1; ALT_SEQ; Genomic_DNA.
EMBL; AL161575; CAB79744.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002687; AEE85686.1; -; Genomic_DNA.
EMBL; AK118989; BAC43565.1; ALT_SEQ; mRNA.
EMBL; AK176571; BAD44334.1; ALT_SEQ; mRNA.
PIR; T08547; T08547.
RefSeq; NP_194715.2; NM_119132.3.
UniGene; At.31884; -.
ProteinModelPortal; Q3MV14; -.
STRING; 3702.AT4G29860.1; -.
iPTMnet; Q3MV14; -.
PaxDb; Q3MV14; -.
PRIDE; Q3MV14; -.
EnsemblPlants; AT4G29860.1; AT4G29860.1; AT4G29860.
GeneID; 829108; -.
Gramene; AT4G29860.1; AT4G29860.1; AT4G29860.
KEGG; ath:AT4G29860; -.
Araport; AT4G29860; -.
TAIR; locus:2123869; AT4G29860.
eggNOG; KOG0322; Eukaryota.
eggNOG; COG2319; LUCA.
HOGENOM; HOG000007056; -.
OMA; LAVLKWH; -.
OrthoDB; EOG09360BYY; -.
PhylomeDB; Q3MV14; -.
PRO; PR:Q3MV14; -.
Proteomes; UP000006548; Chromosome 4.
GO; GO:0080008; C:Cul4-RING E3 ubiquitin ligase complex; ISS:TAIR.
GO; GO:0005737; C:cytoplasm; IDA:UniProtKB.
GO; GO:0005634; C:nucleus; IDA:UniProtKB.
GO; GO:0048700; P:acquisition of desiccation tolerance in seed; IMP:TAIR.
GO; GO:0007049; P:cell cycle; IEA:UniProtKB-KW.
GO; GO:0006974; P:cellular response to DNA damage stimulus; IDA:UniProtKB.
GO; GO:0031570; P:DNA integrity checkpoint; IMP:UniProtKB.
GO; GO:0009793; P:embryo development ending in seed dormancy; IMP:TAIR.
GO; GO:0048481; P:plant ovule development; IMP:UniProtKB.
GO; GO:0009663; P:plasmodesma organization; IMP:UniProtKB.
GO; GO:0010497; P:plasmodesmata-mediated intercellular transport; IMP:UniProtKB.
GO; GO:0009555; P:pollen development; IMP:UniProtKB.
GO; GO:0071158; P:positive regulation of cell cycle arrest; IMP:UniProtKB.
GO; GO:0006282; P:regulation of DNA repair; IMP:UniProtKB.
GO; GO:2000280; P:regulation of root development; IMP:UniProtKB.
GO; GO:0010044; P:response to aluminum ion; IMP:UniProtKB.
GO; GO:0072718; P:response to cisplatin; IMP:UniProtKB.
Gene3D; 2.130.10.10; -; 2.
InterPro; IPR020472; G-protein_beta_WD-40_rep.
InterPro; IPR015943; WD40/YVTN_repeat-like_dom.
InterPro; IPR001680; WD40_repeat.
InterPro; IPR019775; WD40_repeat_CS.
InterPro; IPR017986; WD40_repeat_dom.
InterPro; IPR036322; WD40_repeat_dom_sf.
Pfam; PF00400; WD40; 2.
PRINTS; PR00320; GPROTEINBRPT.
SMART; SM00320; WD40; 5.
SUPFAM; SSF50978; SSF50978; 2.
PROSITE; PS00678; WD_REPEATS_1; 2.
PROSITE; PS50082; WD_REPEATS_2; 2.
PROSITE; PS50294; WD_REPEATS_REGION; 1.
1: Evidence at protein level;
Cell cycle; Complete proteome; Cytoplasm; Developmental protein;
DNA damage; Nucleus; Reference proteome; Repeat; WD repeat.
CHAIN 1 386 Protein DECREASED SIZE EXCLUSION LIMIT 1.
/FTId=PRO_0000432850.
REPEAT 15 54 WD 1. {ECO:0000255}.
REPEAT 62 100 WD 2. {ECO:0000255}.
REPEAT 157 197 WD 3. {ECO:0000255}.
REPEAT 213 256 WD 4. {ECO:0000255}.
REPEAT 260 299 WD 5. {ECO:0000255}.
REPEAT 306 347 WD 6. {ECO:0000255}.
REPEAT 348 386 WD 7. {ECO:0000255}.
MUTAGEN 213 213 G->E: In alt2-2; severely sensitive to
DNA cross-linking agents, enhanced
tolerance to aluminum (Al), but impaired
halting root growth in response to Al
toxicity. {ECO:0000269|PubMed:22345493}.
MUTAGEN 340 340 G->R: In alt2-1; severely sensitive to
the intrastrand DNA cross-linking agent
cisplatin (CDDP) and to the DNA cross-
linking agent mitomycin C (MMC), enhanced
tolerance to aluminum (Al), but impaired
halting root growth in response to Al
toxicity. Fails to halt cell cycle
progression in the presence of DNA cross-
linking agents.
{ECO:0000269|PubMed:22345493}.
SEQUENCE 386 AA; 41986 MW; 7C40E89F5D41536E CRC64;
MSKRPPPDPV AVLRGHRHSV MDVSFHPSKS LLFTGSADGE LRIWDTIQHR AVSSAWAHSR
ANGVLAVAAS PWLGEDKIIS QGRDGTVKCW DIEDGGLSRD PLLILETCAY HFCKFSLVKK
PKNSLQEAES HSRGCDEQDG GDTCNVQIAD DSERSEEDSG LLQDKDHAEG TTFVAVVGEQ
PTEVEIWDLN TGDKIIQLPQ SSPDESPNAS TKGRGMCMAV QLFCPPESQG FLHVLAGYED
GSILLWDIRN AKIPLTSVKF HSEPVLSLSV ASSCDGGISG GADDKIVMYN LNHSTGSCTI
RKEITLERPG VSGTSIRVDG KIAATAGWDH RIRVYNYRKG NALAILKYHR ATCNAVSYSP
DCELMASASE DATVALWKLY PPHKSL


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