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Protein DELAY OF GERMINATION 1 (GLUCOSE SENSING QTL 5)

 DOG1_ARATH              Reviewed;         291 AA.
A0SVK0; Q0WQP5; Q9FJ53;
02-NOV-2016, integrated into UniProtKB/Swiss-Prot.
09-JAN-2007, sequence version 1.
30-AUG-2017, entry version 75.
RecName: Full=Protein DELAY OF GERMINATION 1 {ECO:0000303|PubMed:17065317};
AltName: Full=GLUCOSE SENSING QTL 5 {ECO:0000303|PubMed:18410483};
Name=DOG1 {ECO:0000303|PubMed:17065317};
Synonyms=GSQ5 {ECO:0000303|PubMed:18410483};
OrderedLocusNames=At5g45830 {ECO:0000312|Araport:AT5G45830};
ORFNames=K15I22.3 {ECO:0000312|EMBL:BAB09311.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702 {ECO:0000312|EMBL:ABK81210.1};
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, DISRUPTION PHENOTYPE,
GENE FAMILY, NOMENCLATURE, TISSUE SPECIFICITY, DEVELOPMENTAL STAGE,
AND ALTERNATIVE SPLICING.
STRAIN=cv. Columbia, cv. Cvi-1, cv. Kon, cv. Landsberg erecta, and
cv. Sha;
PubMed=17065317; DOI=10.1073/pnas.0607877103;
Bentsink L., Jowett J., Hanhart C.J., Koornneef M.;
"Cloning of DOG1, a quantitative trait locus controlling seed dormancy
in Arabidopsis.";
Proc. Natl. Acad. Sci. U.S.A. 103:17042-17047(2006).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), ALTERNATIVE POLYADENYLATION,
FUNCTION, DISRUPTION PHENOTYPE (ISOFORM 1), IDENTIFICATION BY MASS
SPECTROMETRY (ISOFORM 2), DEVELOPMENTAL STAGE, AND SUBCELLULAR
LOCATION.
PubMed=26620523; DOI=10.1104/pp.15.01483;
Cyrek M., Fedak H., Ciesielski A., Guo Y., Sliwa A., Brzezniak L.,
Krzyczmonik K., Pietras Z., Kaczanowski S., Liu F., Swiezewski S.;
"Seed dormancy in Arabidopsis is controlled by alternative
polyadenylation of DOG1.";
Plant Physiol. 170:947-955(2016).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10048488; DOI=10.1093/dnares/5.6.379;
Asamizu E., Sato S., Kaneko T., Nakamura Y., Kotani H., Miyajima N.,
Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. VIII.
Sequence features of the regions of 1,081,958 bp covered by seventeen
physically assigned P1 and TAC clones.";
DNA Res. 5:379-391(1998).
[4]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 18-291.
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[6]
INDUCTION BY HISTONE MONOUBIQUITINATION.
PubMed=17329563; DOI=10.1105/tpc.106.049221;
Liu Y., Koornneef M., Soppe W.J.J.;
"The absence of histone H2B monoubiquitination in the Arabidopsis hub1
(rdo4) mutant reveals a role for chromatin remodeling in seed
dormancy.";
Plant Cell 19:433-444(2007).
[7]
FUNCTION, INDUCTION BY GLUCOSE, AND DISRUPTION PHENOTYPE.
STRAIN=cv. Columbia, cv. Cvi-1, and cv. Landsberg erecta;
PubMed=18410483; DOI=10.1111/j.1365-313X.2008.03515.x;
Teng S., Rognoni S., Bentsink L., Smeekens S.;
"The Arabidopsis GSQ5/DOG1 Cvi allele is induced by the ABA-mediated
sugar signalling pathway, and enhances sugar sensitivity by
stimulating ABI4 expression.";
Plant J. 55:372-381(2008).
[8]
INDUCTION.
PubMed=21569772; DOI=10.1016/j.febslet.2011.04.077;
Mortensen S.A., Soenderkaer M., Lynggaard C., Grasser M.,
Nielsen K.L., Grasser K.D.;
"Reduced expression of the DOG1 gene in Arabidopsis mutant seeds
lacking the transcript elongation factor TFIIS.";
FEBS Lett. 585:1929-1933(2011).
[9]
INDUCTION BY COLD.
STRAIN=cv. Columbia;
PubMed=21803937; DOI=10.1105/tpc.111.087643;
Kendall S.L., Hellwege A., Marriot P., Whalley C., Graham I.A.,
Penfield S.;
"Induction of dormancy in Arabidopsis summer annuals requires parallel
regulation of DOG1 and hormone metabolism by low temperature and CBF
transcription factors.";
Plant Cell 23:2568-2580(2011).
[10]
FUNCTION, DEVELOPMENTAL STAGE, INDUCTION BY COLD, PROTEIN
MODIFICATION, TISSUE SPECIFICITY, AND SUBCELLULAR LOCATION.
PubMed=22829147; DOI=10.1105/tpc.112.100214;
Nakabayashi K., Bartsch M., Xiang Y., Miatton E., Pellengahr S.,
Yano R., Seo M., Soppe W.J.;
"The time required for dormancy release in Arabidopsis is determined
by DELAY OF GERMINATION1 protein levels in freshly harvested seeds.";
Plant Cell 24:2826-2838(2012).
[11]
FUNCTION.
PubMed=25114251; DOI=10.1073/pnas.1403851111;
Graeber K., Linkies A., Steinbrecher T., Mummenhoff K., Tarkowska D.,
Tureckova V., Ignatz M., Sperber K., Voegele A., de Jong H.,
Urbanova T., Strnad M., Leubner-Metzger G.;
"DELAY OF GERMINATION 1 mediates a conserved coat-dormancy mechanism
for the temperature- and gibberellin-dependent control of seed
germination.";
Proc. Natl. Acad. Sci. U.S.A. 111:E3571-E3580(2014).
[12]
SPLICING REGULATION.
PubMed=25568310; DOI=10.15252/embj.201489478;
Dolata J., Guo Y., Kolowerzo A., Smolinski D., Brzyzek G.,
Jarmolowski A., Swiezewski S.;
"NTR1 is required for transcription elongation checkpoints at
alternative exons in Arabidopsis.";
EMBO J. 34:544-558(2015).
[13]
INDUCTION BY LDL1 AND LDL2.
PubMed=25852712; DOI=10.3389/fpls.2015.00159;
Zhao M., Yang S., Liu X., Wu K.;
"Arabidopsis histone demethylases LDL1 and LDL2 control primary seed
dormancy by regulating DELAY OF GERMINATION 1 and ABA signaling-
related genes.";
Front. Plant Sci. 6:159-159(2015).
[14]
ALTERNATIVE SPLICING, SUBCELLULAR LOCATION, MUTAGENESIS OF TYR-15, AND
SUBUNIT.
PubMed=26684465; DOI=10.1371/journal.pgen.1005737;
Nakabayashi K., Bartsch M., Ding J., Soppe W.J.;
"Seed dormancy in Arabidopsis requires self-binding ability of DOG1
protein and the presence of multiple isoforms generated by alternative
splicing.";
PLoS Genet. 11:E1005737-E1005737(2015).
[15]
FUNCTION.
PubMed=26729600; DOI=10.1111/tpj.13118;
Dekkers B.J., He H., Hanson J., Willems L.A., Jamar D.C., Cueff G.,
Rajjou L., Hilhorst H.W., Bentsink L.;
"The Arabidopsis DELAY OF GERMINATION 1 gene affects ABSCISIC ACID
INSENSITIVE 5 (ABI5) expression and genetically interacts with ABI3
during Arabidopsis seed development.";
Plant J. 85:451-465(2016).
[16]
FUNCTION.
PubMed=27035986; DOI=10.1073/pnas.1600558113;
Huo H., Wei S., Bradford K.J.;
"DELAY OF GERMINATION1 (DOG1) regulates both seed dormancy and
flowering time through microRNA pathways.";
Proc. Natl. Acad. Sci. U.S.A. 113:E2199-E2206(2016).
-!- FUNCTION: Required for the induction of seed dormancy
(PubMed:17065317, PubMed:26620523, PubMed:22829147). The level of
DOG1 protein in freshly harvested seeds determines the level of
seed dormancy (PubMed:22829147). Determines the temperature window
for germination by regulating the expression of micropylar
endosperm-weakening genes through temperature control of the
gibberellins metabolism (PubMed:25114251). Regulates seed dormancy
and flowering time through an influence on levels of microRNAs
miR156 and miR172 (PubMed:27035986). Regulator of seed maturation
interfering with abscisic acid signaling components and activating
ABI5 (PubMed:26729600). In cv. Cvi-1, enhances glucose induction
of ABI4 (PubMed:18410483). {ECO:0000269|PubMed:17065317,
ECO:0000269|PubMed:18410483, ECO:0000269|PubMed:22829147,
ECO:0000269|PubMed:25114251, ECO:0000269|PubMed:26620523,
ECO:0000269|PubMed:26729600, ECO:0000269|PubMed:27035986}.
-!- SUBUNIT: Homodimer (PubMed:26684465). Self-binding does not
influence protein accumulation but is required for full function
(PubMed:26684465). Single isoforms are functional, but the
presence of additional isoforms is required to prevent protein
degradation (PubMed:26684465). {ECO:0000269|PubMed:26684465}.
-!- SUBCELLULAR LOCATION: Isoform 1: Nucleus
{ECO:0000269|PubMed:22829147, ECO:0000269|PubMed:26620523,
ECO:0000269|PubMed:26684465}.
-!- SUBCELLULAR LOCATION: Isoform 2: Nucleus
{ECO:0000269|PubMed:26620523}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Comment=A number of isoforms are produced. {ECO:0000305};
Name=1;
IsoId=A0SVK0-1; Sequence=Displayed;
Name=2;
IsoId=A0SVK0-2; Sequence=VSP_058562, VSP_058563;
Note=Produced by alternative polyadenylation.
{ECO:0000269|PubMed:26620523};
-!- TISSUE SPECIFICITY: Detected only in seeds (PubMed:17065317).
Expressed mainly in vascular tissues of the cotyledon, hypocotyl
and radicle of the embryo. {ECO:0000269|PubMed:17065317,
ECO:0000269|PubMed:22829147}.
-!- DEVELOPMENTAL STAGE: Isoform 1 and isoform 2: Transcription starts
at the beginning of seed maturation 9 days after pollination and
reaches its highest level during the last phases of seed
development (PubMed:26620523, PubMed:17065317, PubMed:22829147).
Isoform 1: Upon imbibition the transcripts rapidly disappear in
both dormant and after-ripened seeds, but the level of protein is
hardly affected (PubMed:17065317, PubMed:22829147). Isoform 2:
Transcription starts at the beginning of seed maturation 9 days
after pollination and reaches its highest level during the last
phases of seed development (PubMed:26620523).
{ECO:0000269|PubMed:17065317, ECO:0000269|PubMed:22829147,
ECO:0000269|PubMed:26620523}.
-!- INDUCTION: Up-regulation by glucose of the Cvi-1 allele, but not
of the Columbia and Landsberg erecta alleles (PubMed:18410483).
May be up-regulated by the transcript elongation factor TFIIS
(PubMed:21569772). Up-regulated by cold (PubMed:21803937,
PubMed:22829147). Up-regulated by histone monoubiquitination
through HUB1 (PubMed:17329563). Down-regulated by the histone
demethylases LDL1 and LDL2 (PubMed:25852712).
{ECO:0000269|PubMed:17329563, ECO:0000269|PubMed:18410483,
ECO:0000269|PubMed:21803937, ECO:0000269|PubMed:22829147,
ECO:0000269|PubMed:25852712, ECO:0000305|PubMed:21569772}.
-!- PTM: A shift in isoelectric focusing of the protein occurs during
after-ripening, probably leading to its loss of function.
{ECO:0000269|PubMed:22829147}.
-!- DISRUPTION PHENOTYPE: Loss of seed dormancy, but no effect on
sugar sensitivity (in cv. Columbia) (PubMed:17065317,
PubMed:18410483). A T-DNA insertion mutant lacking the long
version of the DOG1 transcript (isoform 1) but expressing isoform
2 exhibits stronger seed dormancy (PubMed:26620523).
{ECO:0000269|PubMed:17065317, ECO:0000269|PubMed:18410483,
ECO:0000269|PubMed:26620523}.
-!- MISCELLANEOUS: The Columbia and Landsberg erecta alleles have weak
dormancy phenotypes, whereas the Cvi-1 allele shows a strong
dormancy phenotype (PubMed:17065317). The Cvi-1 allele shows a
sugar-supersensitive phenotype, whereas the Columbia and Landsberg
erecta alleles don't have a significant effect on sugar
sensitivity (PubMed:18410483). {ECO:0000269|PubMed:17065317,
ECO:0000269|PubMed:18410483}.
-!- MISCELLANEOUS: Transgenic mutant seeds expressing single DOG1
transcript variants lack dormancy and do not accumulate DOG1
protein. Simultaneous expression of two or more DOG1 transcript
variants encoding different isoforms, however, leads to the
accumulation of DOG1 protein and increased seed dormancy
(PubMed:26684465). The spliceosome disassembly factor STIP1/NTR1
is required for proper transcript levels and splicing of DOG1
(PubMed:25568310). {ECO:0000269|PubMed:25568310,
ECO:0000269|PubMed:26684465}.
-!- MISCELLANEOUS: Isoform 2: The use of a proximal polyadenylation
site leads to the production of a short DOG1 mRNA that is
translated in vivo, producing an isoform that is sufficient for
seed dormancy establishment. {ECO:0000269|PubMed:26620523}.
-!- SEQUENCE CAUTION:
Sequence=BAB09311.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
-----------------------------------------------------------------------
EMBL; EF028469; ABK81210.1; -; Genomic_DNA.
EMBL; EF028472; ABK81213.1; -; Genomic_DNA.
EMBL; AB016870; BAB09311.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002688; AED95304.1; -; Genomic_DNA.
EMBL; CP002688; ANM68819.1; -; Genomic_DNA.
EMBL; CP002688; ANM68820.1; -; Genomic_DNA.
EMBL; CP002688; ANM68821.1; -; Genomic_DNA.
EMBL; AK228646; BAF00554.1; -; mRNA.
RefSeq; NP_001318745.1; NM_001344641.1.
RefSeq; NP_001330541.1; NM_001344645.1. [A0SVK0-2]
RefSeq; NP_001330542.1; NM_001344642.1. [A0SVK0-2]
RefSeq; NP_199395.2; NM_123951.3. [A0SVK0-1]
UniGene; At.29992; -.
ProteinModelPortal; A0SVK0; -.
SMR; A0SVK0; -.
STRING; 3702.AT5G45830.1; -.
PaxDb; A0SVK0; -.
PRIDE; Q0WQP5; -.
EnsemblPlants; AT5G45830.2; AT5G45830.2; AT5G45830. [A0SVK0-2]
EnsemblPlants; AT5G45830.3; AT5G45830.3; AT5G45830. [A0SVK0-1]
EnsemblPlants; AT5G45830.6; AT5G45830.6; AT5G45830. [A0SVK0-2]
GeneID; 834623; -.
Gramene; AT5G45830.2; AT5G45830.2; AT5G45830.
Gramene; AT5G45830.3; AT5G45830.3; AT5G45830.
Gramene; AT5G45830.6; AT5G45830.6; AT5G45830.
KEGG; ath:AT5G45830; -.
Araport; AT5G45830; -.
TAIR; locus:2152390; AT5G45830.
eggNOG; ENOG410IZE0; Eukaryota.
eggNOG; ENOG410YM4K; LUCA.
OMA; AHRCSSN; -.
OrthoDB; EOG09360N1K; -.
PhylomeDB; A0SVK0; -.
PRO; PR:A0SVK0; -.
Proteomes; UP000006548; Chromosome 5.
GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
GO; GO:0009738; P:abscisic acid-activated signaling pathway; IMP:TAIR.
GO; GO:2000033; P:regulation of seed dormancy process; IMP:TAIR.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW.
GO; GO:0010162; P:seed dormancy process; IMP:TAIR.
GO; GO:0010182; P:sugar mediated signaling pathway; IMP:TAIR.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
InterPro; IPR025422; TGA_domain.
Pfam; PF14144; DOG1; 1.
PROSITE; PS51806; DOG1; 1.
1: Evidence at protein level;
Activator; Alternative splicing; Complete proteome; Germination;
Nucleus; Reference proteome; Transcription; Transcription regulation.
CHAIN 1 291 Protein DELAY OF GERMINATION 1.
/FTId=PRO_0000437685.
DOMAIN 8 258 DOG1. {ECO:0000255|PROSITE-
ProRule:PRU01147}.
COMPBIAS 131 135 Poly-Gly. {ECO:0000255}.
COMPBIAS 255 260 Poly-Arg. {ECO:0000255}.
VAR_SEQ 268 276 VIFDACTTV -> GNAGGEEGK (in isoform 2).
/FTId=VSP_058562.
VAR_SEQ 277 291 Missing (in isoform 2).
/FTId=VSP_058563.
MUTAGEN 15 15 Y->A: Strongly reduced self-binding.
{ECO:0000269|PubMed:26684465}.
SEQUENCE 291 AA; 32470 MW; 58BC5E3F940889ED CRC64;
MGSSSKNIEQ AQDSYLEWMS LQSQRIPELK QLLAQRRSHG DEDNDNKLRK LTGKIIGDFK
NYAAKRADLA HRCSSNYYAP TWNSPLENAL IWMGGCRPSS FFRLVYALCG SQTEIRVTQF
LRNIDGYESS GGGGGASLSD LSAEQLAKIN VLHVKIIDEE EKMTKKVSSL QEDAADIPIA
TVAYEMENVG EPNVVVDQAL DKQEEAMARL LVEADNLRVD TLAKILGILS PVQGADFLLA
GKKLHLSMHE WGTMRDRRRR DCMVDTEVIF DACTTVNSGP RPTETTNNER N


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