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Protein FAM83D (Spindle protein CHICA)

 FA83D_HUMAN             Reviewed;         585 AA.
Q9H4H8; B4E1I7; Q5THR2; Q68EN1; Q6P457; Q7Z6H0; Q96DF5; Q96N89;
Q9BVM8;
25-NOV-2002, integrated into UniProtKB/Swiss-Prot.
25-NOV-2002, sequence version 3.
27-SEP-2017, entry version 133.
RecName: Full=Protein FAM83D {ECO:0000305};
AltName: Full=Spindle protein CHICA {ECO:0000305|PubMed:18485706};
Name=FAM83D {ECO:0000312|HGNC:HGNC:16122};
Synonyms=C20orf129 {ECO:0000312|HGNC:HGNC:16122};
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
TISSUE=Kidney, and Trachea;
PubMed=14702039; DOI=10.1038/ng1285;
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human
cDNAs.";
Nat. Genet. 36:40-45(2004).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=11780052; DOI=10.1038/414865a;
Deloukas P., Matthews L.H., Ashurst J.L., Burton J., Gilbert J.G.R.,
Jones M., Stavrides G., Almeida J.P., Babbage A.K., Bagguley C.L.,
Bailey J., Barlow K.F., Bates K.N., Beard L.M., Beare D.M.,
Beasley O.P., Bird C.P., Blakey S.E., Bridgeman A.M., Brown A.J.,
Buck D., Burrill W.D., Butler A.P., Carder C., Carter N.P.,
Chapman J.C., Clamp M., Clark G., Clark L.N., Clark S.Y., Clee C.M.,
Clegg S., Cobley V.E., Collier R.E., Connor R.E., Corby N.R.,
Coulson A., Coville G.J., Deadman R., Dhami P.D., Dunn M.,
Ellington A.G., Frankland J.A., Fraser A., French L., Garner P.,
Grafham D.V., Griffiths C., Griffiths M.N.D., Gwilliam R., Hall R.E.,
Hammond S., Harley J.L., Heath P.D., Ho S., Holden J.L., Howden P.J.,
Huckle E., Hunt A.R., Hunt S.E., Jekosch K., Johnson C.M., Johnson D.,
Kay M.P., Kimberley A.M., King A., Knights A., Laird G.K., Lawlor S.,
Lehvaeslaiho M.H., Leversha M.A., Lloyd C., Lloyd D.M., Lovell J.D.,
Marsh V.L., Martin S.L., McConnachie L.J., McLay K., McMurray A.A.,
Milne S.A., Mistry D., Moore M.J.F., Mullikin J.C., Nickerson T.,
Oliver K., Parker A., Patel R., Pearce T.A.V., Peck A.I.,
Phillimore B.J.C.T., Prathalingam S.R., Plumb R.W., Ramsay H.,
Rice C.M., Ross M.T., Scott C.E., Sehra H.K., Shownkeen R., Sims S.,
Skuce C.D., Smith M.L., Soderlund C., Steward C.A., Sulston J.E.,
Swann R.M., Sycamore N., Taylor R., Tee L., Thomas D.W., Thorpe A.,
Tracey A., Tromans A.C., Vaudin M., Wall M., Wallis J.M.,
Whitehead S.L., Whittaker P., Willey D.L., Williams L., Williams S.A.,
Wilming L., Wray P.W., Hubbard T., Durbin R.M., Bentley D.R., Beck S.,
Rogers J.;
"The DNA sequence and comparative analysis of human chromosome 20.";
Nature 414:865-871(2001).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
TISSUE=Lung, Placenta, and Uterus;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[4]
SUBCELLULAR LOCATION, AND IDENTIFICATION BY MASS SPECTROMETRY.
PubMed=15561729; DOI=10.1074/mcp.M400158-MCP200;
Sauer G., Koerner R., Hanisch A., Ries A., Nigg E.A., Sillje H.H.W.;
"Proteome analysis of the human mitotic spindle.";
Mol. Cell. Proteomics 4:35-43(2005).
[5]
FUNCTION, SUBCELLULAR LOCATION, INTERACTION WITH KIF22, REGION,
PHOSPHORYLATION, AND INDUCTION.
PubMed=18485706; DOI=10.1016/j.cub.2008.04.041;
Santamaria A., Nagel S., Sillje H.H.W., Nigg E.A.;
"The spindle protein CHICA mediates localization of the chromokinesin
Kid to the mitotic spindle.";
Curr. Biol. 18:723-729(2008).
[6]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-513, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Cervix carcinoma;
PubMed=18220336; DOI=10.1021/pr0705441;
Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D.,
Yates J.R. III;
"Combining protein-based IMAC, peptide-based IMAC, and MudPIT for
efficient phosphoproteomic analysis.";
J. Proteome Res. 7:1346-1351(2008).
[7]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-462, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Cervix carcinoma;
PubMed=18691976; DOI=10.1016/j.molcel.2008.07.007;
Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R.,
Greff Z., Keri G., Stemmann O., Mann M.;
"Kinase-selective enrichment enables quantitative phosphoproteomics of
the kinome across the cell cycle.";
Mol. Cell 31:438-448(2008).
[8]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-513, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Cervix carcinoma;
PubMed=20068231; DOI=10.1126/scisignal.2000475;
Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L.,
Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S.,
Mann M.;
"Quantitative phosphoproteomics reveals widespread full
phosphorylation site occupancy during mitosis.";
Sci. Signal. 3:RA3-RA3(2010).
[9]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-298 AND SER-568, AND
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Erythroleukemia;
PubMed=23186163; DOI=10.1021/pr300630k;
Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J.,
Mohammed S.;
"Toward a comprehensive characterization of a human cancer cell
phosphoproteome.";
J. Proteome Res. 12:260-271(2013).
[10]
FUNCTION, AND INTERACTION WITH FBXW7.
PubMed=24344117;
Wang Z., Liu Y., Zhang P., Zhang W., Wang W., Curr K., Wei G.,
Mao J.H.;
"FAM83D promotes cell proliferation and motility by downregulating
tumor suppressor gene FBXW7.";
Oncotarget 4:2476-2486(2013).
[11]
INTERACTION WITH RAF1.
PubMed=24736947; DOI=10.1158/1541-7786.MCR-13-0289;
Cipriano R., Miskimen K.L., Bryson B.L., Foy C.R., Bartel C.A.,
Jackson M.W.;
"Conserved oncogenic behavior of the FAM83 family regulates MAPK
signaling in human cancer.";
Mol. Cancer Res. 12:1156-1165(2014).
[12]
FUNCTION.
PubMed=25646692; DOI=10.1016/j.bbrc.2015.01.108;
Wang D., Han S., Peng R., Wang X., Yang X.X., Yang R.J., Jiao C.Y.,
Ding D., Ji G.W., Li X.C.;
"FAM83D activates the MEK/ERK signaling pathway and promotes cell
proliferation in hepatocellular carcinoma.";
Biochem. Biophys. Res. Commun. 458:313-320(2015).
-!- FUNCTION: Probable proto-oncogene that regulates cell
proliferation, growth, migration and epithelial to mesenchymal
transition. Through the degradation of FBXW7, may act indirectly
on the expression and downstream signaling of MTOR, JUN and MYC
(PubMed:24344117). May play also a role in cell proliferation
through activation of the ERK1/ERK2 signaling cascade
(PubMed:25646692). May also be important for proper chromosome
congression and alignment during mitosis through its interaction
with KIF22. {ECO:0000269|PubMed:18485706,
ECO:0000269|PubMed:24344117, ECO:0000269|PubMed:25646692}.
-!- SUBUNIT: Interacts with FBXW7; promotes FBXW7 degradation
(PubMed:24344117). May interact with RAF1 (PubMed:24736947).
Interacts with KIF22; recruits KIF22 to mitotic spindle
microtubules (PubMed:18485706). {ECO:0000269|PubMed:18485706,
ECO:0000269|PubMed:24344117, ECO:0000269|PubMed:24736947}.
-!- SUBCELLULAR LOCATION: Cytoplasm. Cytoplasm, cytoskeleton, spindle.
Cytoplasm, cytoskeleton, spindle pole
{ECO:0000269|PubMed:15561729, ECO:0000269|PubMed:18485706}.
Note=Primarily cytoplasmic during interphase, but at prophase,
associates with spindle microtubules, with a clear concentration
toward the spindle poles. It persists on spindle microtubules
through metaphase and anaphase. {ECO:0000269|PubMed:18485706}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q9H4H8-1; Sequence=Displayed;
Name=2;
IsoId=Q9H4H8-2; Sequence=VSP_036446;
Note=No experimental confirmation available.;
-!- INDUCTION: Up-regulated during mitosis.
{ECO:0000269|PubMed:18485706}.
-!- PTM: Phosphorylated during mitosis. {ECO:0000269|PubMed:18485706}.
-!- MISCELLANEOUS: Was named CHICA (girl in Spanish) because it
interacts with KID.
-!- SIMILARITY: Belongs to the FAM83 family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=AAH01068.2; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};
Sequence=AAH06553.3; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};
Sequence=AAH53683.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};
Sequence=AAH63661.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};
Sequence=AAH80188.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};
Sequence=BAB71016.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};
Sequence=BAB71016.1; Type=Erroneous termination; Positions=262; Note=Translated as Trp.; Evidence={ECO:0000305};
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EMBL; AK055793; BAB71016.1; ALT_SEQ; mRNA.
EMBL; AK303860; BAG64799.1; -; mRNA.
EMBL; AL023803; -; NOT_ANNOTATED_CDS; Genomic_DNA.
EMBL; BC001068; AAH01068.2; ALT_INIT; mRNA.
EMBL; BC006553; AAH06553.3; ALT_INIT; mRNA.
EMBL; BC053683; AAH53683.1; ALT_INIT; mRNA.
EMBL; BC063661; AAH63661.1; ALT_INIT; mRNA.
EMBL; BC080188; AAH80188.1; ALT_INIT; mRNA.
CCDS; CCDS42872.2; -. [Q9H4H8-1]
RefSeq; NP_112181.3; NM_030919.2. [Q9H4H8-1]
UniGene; Hs.726442; -.
PDB; 5E0L; X-ray; 1.31 A; C=384-394.
PDB; 5E0M; X-ray; 1.65 A; C=436-446.
PDBsum; 5E0L; -.
PDBsum; 5E0M; -.
ProteinModelPortal; Q9H4H8; -.
SMR; Q9H4H8; -.
BioGrid; 123547; 36.
IntAct; Q9H4H8; 17.
MINT; MINT-4990204; -.
STRING; 9606.ENSP00000217429; -.
iPTMnet; Q9H4H8; -.
PhosphoSitePlus; Q9H4H8; -.
BioMuta; FAM83D; -.
DMDM; 25452904; -.
EPD; Q9H4H8; -.
MaxQB; Q9H4H8; -.
PaxDb; Q9H4H8; -.
PeptideAtlas; Q9H4H8; -.
PRIDE; Q9H4H8; -.
Ensembl; ENST00000619850; ENSP00000481465; ENSG00000101447. [Q9H4H8-1]
GeneID; 81610; -.
KEGG; hsa:81610; -.
UCSC; uc061wzh.1; human. [Q9H4H8-1]
CTD; 81610; -.
DisGeNET; 81610; -.
EuPathDB; HostDB:ENSG00000101447.13; -.
GeneCards; FAM83D; -.
H-InvDB; HIX0015813; -.
HGNC; HGNC:16122; FAM83D.
HPA; HPA049333; -.
neXtProt; NX_Q9H4H8; -.
OpenTargets; ENSG00000101447; -.
PharmGKB; PA25670; -.
eggNOG; ENOG410IGVW; Eukaryota.
eggNOG; ENOG410ZYBU; LUCA.
GeneTree; ENSGT00760000119168; -.
HOVERGEN; HBG062421; -.
InParanoid; Q9H4H8; -.
KO; K16805; -.
PhylomeDB; Q9H4H8; -.
TreeFam; TF330777; -.
GenomeRNAi; 81610; -.
PRO; PR:Q9H4H8; -.
Proteomes; UP000005640; Chromosome 20.
Bgee; ENSG00000101447; -.
CleanEx; HS_FAM83D; -.
ExpressionAtlas; Q9H4H8; baseline and differential.
Genevisible; Q9H4H8; HS.
GO; GO:0005737; C:cytoplasm; IDA:UniProtKB.
GO; GO:0097431; C:mitotic spindle pole; IDA:UniProtKB.
GO; GO:0019894; F:kinesin binding; IPI:UniProtKB.
GO; GO:0008017; F:microtubule binding; IDA:UniProtKB.
GO; GO:0019901; F:protein kinase binding; IPI:UniProtKB.
GO; GO:0051301; P:cell division; IEA:UniProtKB-KW.
GO; GO:0016477; P:cell migration; IDA:UniProtKB.
GO; GO:0008283; P:cell proliferation; IDA:UniProtKB.
GO; GO:0001837; P:epithelial to mesenchymal transition; IDA:UniProtKB.
GO; GO:0051310; P:metaphase plate congression; IMP:UniProtKB.
GO; GO:1902808; P:positive regulation of cell cycle G1/S phase transition; IMP:UniProtKB.
GO; GO:1902480; P:protein localization to mitotic spindle; IMP:UniProtKB.
GO; GO:0070372; P:regulation of ERK1 and ERK2 cascade; IMP:UniProtKB.
GO; GO:0042176; P:regulation of protein catabolic process; IDA:UniProtKB.
GO; GO:0032006; P:regulation of TOR signaling; IDA:UniProtKB.
InterPro; IPR012461; FAM83.
PANTHER; PTHR16181; PTHR16181; 1.
Pfam; PF07894; DUF1669; 1.
1: Evidence at protein level;
3D-structure; Alternative splicing; Cell cycle; Cell division;
Complete proteome; Cytoplasm; Cytoskeleton; Mitosis; Phosphoprotein;
Proto-oncogene; Reference proteome.
CHAIN 1 585 Protein FAM83D.
/FTId=PRO_0000079460.
REGION 340 585 Required for interaction with KIF22 and
function in chromosome congression.
{ECO:0000269|PubMed:18485706}.
COMPBIAS 80 86 Poly-Ala.
COMPBIAS 458 496 Ser-rich.
MOD_RES 298 298 Phosphoserine.
{ECO:0000244|PubMed:23186163}.
MOD_RES 462 462 Phosphoserine.
{ECO:0000244|PubMed:18691976}.
MOD_RES 513 513 Phosphothreonine.
{ECO:0000244|PubMed:18220336,
ECO:0000244|PubMed:20068231}.
MOD_RES 568 568 Phosphoserine.
{ECO:0000244|PubMed:23186163}.
VAR_SEQ 123 138 Missing (in isoform 2).
{ECO:0000303|PubMed:14702039}.
/FTId=VSP_036446.
CONFLICT 11 11 V -> L (in Ref. 3; AAH01068/AAH06553/
AAH63661). {ECO:0000305}.
CONFLICT 79 79 G -> GA (in Ref. 3; AAH53683).
{ECO:0000305}.
CONFLICT 242 242 H -> R (in Ref. 2; BAG64799).
{ECO:0000305}.
STRAND 386 392 {ECO:0000244|PDB:5E0L}.
SEQUENCE 585 AA; 64424 MW; 9D1C86F0BFE47B10 CRC64;
MALLSEGLDE VPAACLSPCG PPNPTELFSE SRRLALEELV AGGPEAFAAF LRRERLARFL
NPDEVHAILR AAERPGEEGA AAAAAAEDSF GSSHDCSSGT YFPEQSDLEP PLLELGWPAF
YQGAYRGATR VETHFQPRGA GEGGPYGCKD ALRQQLRSAR EVIAVVMDVF TDIDIFRDLQ
EICRKQGVAV YILLDQALLS QFLDMCMDLK VHPEQEKLMT VRTITGNIYY ARSGTKIIGK
VHEKFTLIDG IRVATGSYSF TWTDGKLNSS NLVILSGQVV EHFDLEFRIL YAQSKPISPK
LLSHFQSSNK FDHLTNRKPQ SKELTLGNLL RMRLARLSST PRKADLDPEM PAEGKAERKP
HDCESSTVSE EDYFSSHRDE LQSRKAIDAA TQTEPGEEMP GLSVSEVGTQ TSITTACAGT
QTAVITRIAS SQTTIWSRST TTQTDMDENI LFPRGTQSTE GSPVSKMSVS RSSSLKSSSS
VSSQGSVASS TGSPASIRTT DFHNPGYPKY LGTPHLELYL SDSLRNLNKE RQFHFAGIRS
RLNHMLAMLS RRTLFTENHL GLHSGNFSRV NLLAVRDVAL YPSYQ


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