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Protein LOW PSII ACCUMULATION 2, chloroplastic

 LPA2_ARATH              Reviewed;         185 AA.
F4KDA6; Q0WNZ0; Q9FHN0;
22-JAN-2014, integrated into UniProtKB/Swiss-Prot.
28-JUN-2011, sequence version 1.
23-MAY-2018, entry version 40.
RecName: Full=Protein LOW PSII ACCUMULATION 2, chloroplastic;
Flags: Precursor;
Name=LPA2; OrderedLocusNames=At5g51545; ORFNames=K17N15.9;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10718197; DOI=10.1093/dnares/7.1.31;
Sato S., Nakamura Y., Kaneko T., Katoh T., Asamizu E., Kotani H.,
Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. X. Sequence
features of the regions of 3,076,755 bp covered by sixty P1 and TAC
clones.";
DNA Res. 7:31-63(2000).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 17-185.
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[4]
FUNCTION, DISRUPTION PHENOTYPE, SUBCELLULAR LOCATION, AND INTERACTION
WITH PSBA; PSBC; PSBD; LPA1 AND ALB3.
PubMed=17601825; DOI=10.1105/tpc.107.050526;
Ma J., Peng L., Guo J., Lu Q., Lu C., Zhang L.;
"LPA2 is required for efficient assembly of photosystem II in
Arabidopsis thaliana.";
Plant Cell 19:1980-1993(2007).
[5]
INTERACTION WITH LPA3, AND DISRUPTION PHENOTYPE.
PubMed=20605914; DOI=10.1104/pp.110.159558;
Cai W., Ma J., Chi W., Zou M., Guo J., Lu C., Zhang L.;
"Cooperation of LPA3 and LPA2 is essential for photosystem II assembly
in Arabidopsis.";
Plant Physiol. 154:109-120(2010).
-!- FUNCTION: Involved in assisting chlorophyll a binding protein psbC
assembly within photosystem II (PSII). Works cooperatively with
LPA3. {ECO:0000269|PubMed:17601825}.
-!- SUBUNIT: Interacts with psbC, LPA3 and ALB3, but not with psbA,
psbD or LPA1. Is not a component of the PSII complex.
{ECO:0000269|PubMed:17601825, ECO:0000269|PubMed:20605914}.
-!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane
{ECO:0000269|PubMed:17601825}; Multi-pass membrane protein
{ECO:0000269|PubMed:17601825}.
-!- DISRUPTION PHENOTYPE: Pale-green phenotype and greatly reduced
growth. Lpa2 and lpa3 double mutant is seedling lethal.
{ECO:0000269|PubMed:17601825, ECO:0000269|PubMed:20605914}.
-!- SEQUENCE CAUTION:
Sequence=BAB08670.1; Type=Erroneous gene model prediction; Note=The predicted gene At5g51540 has been split into 2 genes: At5g51540 and At5g51545.; Evidence={ECO:0000305};
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EMBL; AB018109; BAB08670.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002688; AED96096.1; -; Genomic_DNA.
EMBL; AK229296; BAF01159.1; -; mRNA.
RefSeq; NP_001032057.1; NM_001036980.3.
UniGene; At.63363; -.
BioGrid; 531848; 4.
STRING; 3702.AT5G51545.1; -.
iPTMnet; F4KDA6; -.
PaxDb; F4KDA6; -.
PRIDE; F4KDA6; -.
EnsemblPlants; AT5G51545.1; AT5G51545.1; AT5G51545.
GeneID; 3771487; -.
Gramene; AT5G51545.1; AT5G51545.1; AT5G51545.
KEGG; ath:AT5G51545; -.
Araport; AT5G51545; -.
TAIR; locus:1009023492; AT5G51545.
eggNOG; ENOG410IU1G; Eukaryota.
eggNOG; ENOG410YS92; LUCA.
HOGENOM; HOG000006447; -.
InParanoid; F4KDA6; -.
OMA; NAFLLTW; -.
OrthoDB; EOG09360WPG; -.
PhylomeDB; F4KDA6; -.
PRO; PR:F4KDA6; -.
Proteomes; UP000006548; Chromosome 5.
ExpressionAtlas; F4KDA6; baseline and differential.
Genevisible; F4KDA6; AT.
GO; GO:0009507; C:chloroplast; IDA:TAIR.
GO; GO:0009534; C:chloroplast thylakoid; IDA:TAIR.
GO; GO:0009535; C:chloroplast thylakoid membrane; IEA:UniProtKB-SubCell.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
InterPro; IPR038789; LPA2-like.
PANTHER; PTHR37385; PTHR37385; 1.
1: Evidence at protein level;
Chloroplast; Complete proteome; Membrane; Plastid; Reference proteome;
Thylakoid; Transit peptide; Transmembrane; Transmembrane helix.
TRANSIT 1 46 Chloroplast. {ECO:0000255}.
CHAIN 47 185 Protein LOW PSII ACCUMULATION 2,
chloroplastic.
/FTId=PRO_0000425142.
TRANSMEM 115 135 Helical. {ECO:0000255}.
TRANSMEM 152 172 Helical. {ECO:0000255}.
COMPBIAS 45 65 Ser-rich.
SEQUENCE 185 AA; 20213 MW; F6C962A7297A2F17 CRC64;
MALQIHSPCS FSTRPYHLFF TTRNPRFAIK CQNSQIESDT TEDPSRSKNS SSSGVGFGSP
ASSSSPAKKL SAATSGNKKG KGKREVNRRA PVEKPVFMSE EGAAKAEEQR QNENAFLLTW
LGLGIVILIE GIILAASGFL PEELDKLFVK YVYPVFTPSV VLFVAGTTAY GVLKYIQNEK
MKGQE


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