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Protein LUC7

 LUC7_YEAST              Reviewed;         261 AA.
Q07508; D6VRR1;
31-OCT-2006, integrated into UniProtKB/Swiss-Prot.
01-NOV-1996, sequence version 1.
25-OCT-2017, entry version 111.
RecName: Full=Protein LUC7;
Name=LUC7; Synonyms=EPE1, EXM2; OrderedLocusNames=YDL087C;
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
NCBI_TaxID=559292;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND FUNCTION.
PubMed=10533282; DOI=10.1016/S1357-2725(99)00044-8;
Alexieva K.I., Klis F., Wedler H., Wambutt R., Venkov P.;
"Identification of the essential EPE1 gene involved in retention of
secreted proteins on the cell surface of Saccharomyces cerevisiae
cells.";
Int. J. Biochem. Cell Biol. 31:903-914(1999).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 204508 / S288c;
PubMed=9169867;
Jacq C., Alt-Moerbe J., Andre B., Arnold W., Bahr A., Ballesta J.P.G.,
Bargues M., Baron L., Becker A., Biteau N., Bloecker H., Blugeon C.,
Boskovic J., Brandt P., Brueckner M., Buitrago M.J., Coster F.,
Delaveau T., del Rey F., Dujon B., Eide L.G., Garcia-Cantalejo J.M.,
Goffeau A., Gomez-Peris A., Granotier C., Hanemann V., Hankeln T.,
Hoheisel J.D., Jaeger W., Jimenez A., Jonniaux J.-L., Kraemer C.,
Kuester H., Laamanen P., Legros Y., Louis E.J., Moeller-Rieker S.,
Monnet A., Moro M., Mueller-Auer S., Nussbaumer B., Paricio N.,
Paulin L., Perea J., Perez-Alonso M., Perez-Ortin J.E., Pohl T.M.,
Prydz H., Purnelle B., Rasmussen S.W., Remacha M.A., Revuelta J.L.,
Rieger M., Salom D., Saluz H.P., Saiz J.E., Saren A.-M., Schaefer M.,
Scharfe M., Schmidt E.R., Schneider C., Scholler P., Schwarz S.,
Soler-Mira A., Urrestarazu L.A., Verhasselt P., Vissers S., Voet M.,
Volckaert G., Wagner G., Wambutt R., Wedler E., Wedler H., Woelfl S.,
Harris D.E., Bowman S., Brown D., Churcher C.M., Connor R., Dedman K.,
Gentles S., Hamlin N., Hunt S., Jones L., McDonald S., Murphy L.D.,
Niblett D., Odell C., Oliver K., Rajandream M.A., Richards C.,
Shore L., Walsh S.V., Barrell B.G., Dietrich F.S., Mulligan J.T.,
Allen E., Araujo R., Aviles E., Berno A., Carpenter J., Chen E.,
Cherry J.M., Chung E., Duncan M., Hunicke-Smith S., Hyman R.W.,
Komp C., Lashkari D., Lew H., Lin D., Mosedale D., Nakahara K.,
Namath A., Oefner P., Oh C., Petel F.X., Roberts D., Schramm S.,
Schroeder M., Shogren T., Shroff N., Winant A., Yelton M.A.,
Botstein D., Davis R.W., Johnston M., Andrews S., Brinkman R.,
Cooper J., Ding H., Du Z., Favello A., Fulton L., Gattung S.,
Greco T., Hallsworth K., Hawkins J., Hillier L.W., Jier M.,
Johnson D., Johnston L., Kirsten J., Kucaba T., Langston Y.,
Latreille P., Le T., Mardis E., Menezes S., Miller N., Nhan M.,
Pauley A., Peluso D., Rifkin L., Riles L., Taich A., Trevaskis E.,
Vignati D., Wilcox L., Wohldman P., Vaudin M., Wilson R.,
Waterston R., Albermann K., Hani J., Heumann K., Kleine K.,
Mewes H.-W., Zollner A., Zaccaria P.;
"The nucleotide sequence of Saccharomyces cerevisiae chromosome IV.";
Nature 387:75-78(1997).
[3]
GENOME REANNOTATION.
STRAIN=ATCC 204508 / S288c;
PubMed=24374639; DOI=10.1534/g3.113.008995;
Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R.,
Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S.,
Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M.,
Cherry J.M.;
"The reference genome sequence of Saccharomyces cerevisiae: Then and
now.";
G3 (Bethesda) 4:389-398(2014).
[4]
IDENTIFICATION IN THE U1 SNRNP COMPLEX, AND IDENTIFICATION BY MASS
SPECTROMETRY.
PubMed=10449419; DOI=10.1093/emboj/18.16.4535;
Gottschalk A., Neubauer G., Banroques J., Mann M., Luehrmann R.,
Fabrizio P.;
"Identification by mass spectrometry and functional analysis of novel
proteins of the yeast [U4/U6.U5] tri-snRNP.";
EMBO J. 18:4535-4548(1999).
[5]
IDENTIFICATION IN U1.U2.U4/U6.U5 PENTA-SNRNP COMPLEX, AND
IDENTIFICATION BY MASS SPECTROMETRY.
PubMed=11804584; DOI=10.1016/S1097-2765(02)00436-7;
Stevens S.W., Ryan D.E., Ge H.Y., Moore R.E., Young M.K., Lee T.D.,
Abelson J.;
"Composition and functional characterization of the yeast spliceosomal
penta-snRNP.";
Mol. Cell 9:31-44(2002).
[6]
IDENTIFICATION IN THE U1 SNRNP COMPLEX, AND FUNCTION.
PubMed=10500099; DOI=10.1101/gad.13.18.2425;
Fortes P., Bilbao-Cortes D., Fornerod M., Rigaut G., Raymond W.,
Seraphin B., Mattaj I.W.;
"Luc7p, a novel yeast U1 snRNP protein with a role in 5' splice site
recognition.";
Genes Dev. 13:2425-2438(1999).
[7]
SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
PubMed=14562095; DOI=10.1038/nature02026;
Huh W.-K., Falvo J.V., Gerke L.C., Carroll A.S., Howson R.W.,
Weissman J.S., O'Shea E.K.;
"Global analysis of protein localization in budding yeast.";
Nature 425:686-691(2003).
[8]
LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
PubMed=14562106; DOI=10.1038/nature02046;
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A.,
Dephoure N., O'Shea E.K., Weissman J.S.;
"Global analysis of protein expression in yeast.";
Nature 425:737-741(2003).
[9]
ACETYLATION [LARGE SCALE ANALYSIS] AT SER-2, CLEAVAGE OF INITIATOR
METHIONINE [LARGE SCALE ANALYSIS], AND IDENTIFICATION BY MASS
SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=22814378; DOI=10.1073/pnas.1210303109;
Van Damme P., Lasa M., Polevoda B., Gazquez C., Elosegui-Artola A.,
Kim D.S., De Juan-Pardo E., Demeyer K., Hole K., Larrea E.,
Timmerman E., Prieto J., Arnesen T., Sherman F., Gevaert K.,
Aldabe R.;
"N-terminal acetylome analyses and functional insights of the N-
terminal acetyltransferase NatB.";
Proc. Natl. Acad. Sci. U.S.A. 109:12449-12454(2012).
-!- FUNCTION: Component of the U1 snRNP particle, which recognizes and
binds the 5'-splice site of pre-mRNA. Together with other non-
snRNP factors, U1 snRNP forms the spliceosomal commitment complex,
that targets pre-mRNA to the splicing pathway.
{ECO:0000269|PubMed:10500099, ECO:0000269|PubMed:10533282}.
-!- SUBUNIT: Component of the 18S U1 snRNP particle, a subcomplex of
the spliceosome. {ECO:0000269|PubMed:10449419,
ECO:0000269|PubMed:10500099, ECO:0000269|PubMed:11804584}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:14562095}.
-!- MISCELLANEOUS: Present with 2270 molecules/cell in log phase SD
medium. {ECO:0000269|PubMed:14562106}.
-!- SIMILARITY: Belongs to the Luc7 family. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; Z74135; CAA98653.1; -; Genomic_DNA.
EMBL; BK006938; DAA11771.1; -; Genomic_DNA.
PIR; S67623; S67623.
RefSeq; NP_010196.1; NM_001180146.1.
ProteinModelPortal; Q07508; -.
SMR; Q07508; -.
BioGrid; 31973; 122.
DIP; DIP-3003N; -.
IntAct; Q07508; 32.
MINT; MINT-436556; -.
STRING; 4932.YDL087C; -.
iPTMnet; Q07508; -.
MaxQB; Q07508; -.
PRIDE; Q07508; -.
EnsemblFungi; YDL087C; YDL087C; YDL087C.
GeneID; 851471; -.
KEGG; sce:YDL087C; -.
EuPathDB; FungiDB:YDL087C; -.
SGD; S000002245; LUC7.
GeneTree; ENSGT00730000110670; -.
HOGENOM; HOG000215956; -.
InParanoid; Q07508; -.
OMA; REESWER; -.
OrthoDB; EOG092C4QUH; -.
BioCyc; YEAST:G3O-29495-MONOMER; -.
PRO; PR:Q07508; -.
Proteomes; UP000002311; Chromosome IV.
GO; GO:0005829; C:cytosol; IDA:SGD.
GO; GO:0005634; C:nucleus; IDA:SGD.
GO; GO:0005685; C:U1 snRNP; IMP:SGD.
GO; GO:0071004; C:U2-type prespliceosome; IDA:SGD.
GO; GO:0003729; F:mRNA binding; IDA:SGD.
GO; GO:0006376; P:mRNA splice site selection; IMP:SGD.
InterPro; IPR004882; Luc7-rel.
PANTHER; PTHR12375; PTHR12375; 1.
Pfam; PF03194; LUC7; 1.
1: Evidence at protein level;
Acetylation; Coiled coil; Complete proteome; mRNA processing;
mRNA splicing; Nucleus; Reference proteome; Ribonucleoprotein;
Spliceosome.
INIT_MET 1 1 Removed. {ECO:0000244|PubMed:22814378}.
CHAIN 2 261 Protein LUC7.
/FTId=PRO_0000255959.
COILED 123 190 {ECO:0000255}.
MOD_RES 2 2 N-acetylserine.
{ECO:0000244|PubMed:22814378}.
SEQUENCE 261 AA; 30195 MW; F6CFA1947C1C86B1 CRC64;
MSTMSTPAAE QRKLVEQLMG RDFSFRHNRY SHQKRDLGLH DPKICKSYLV GECPYDLFQG
TKQSLGKCPQ MHLTKHKIQY EREVKQGKTF PEFEREYLAI LSRFVNECNG QISVALQNLK
HTAEERMKIQ QVTEELDVLD VRIGLMGQEI DSLIRADEVS MGMLQSVKLQ ELISKRKEVA
KRVRNITENV GQSAQQKLQV CEVCGAYLSR LDTDRRLADH FLGKIHLGYV KMREDYDRLM
KNNRTTNASK TATTLPGRRF V


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