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Protein ORANGE, chloroplastic (AtOR) (DnaJ-like cysteine-rich domain-containing protein OR)

 ORANG_ARATH             Reviewed;         307 AA.
Q9FKF4;
02-NOV-2016, integrated into UniProtKB/Swiss-Prot.
01-MAR-2001, sequence version 1.
05-JUL-2017, entry version 101.
RecName: Full=Protein ORANGE, chloroplastic {ECO:0000305};
Short=AtOR {ECO:0000303|PubMed:24267591};
AltName: Full=DnaJ-like cysteine-rich domain-containing protein OR {ECO:0000305};
Flags: Precursor;
Name=OR {ECO:0000303|Ref.1};
OrderedLocusNames=At5g61670 {ECO:0000312|Araport:AT5G61670};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
TISSUE=Leaf;
Zhu C., Capell T., Christou P.;
"Cloning and functional chracterization of Arabidopsis thalian Or
gene.";
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=9734815; DOI=10.1093/dnares/5.3.203;
Kotani H., Nakamura Y., Sato S., Asamizu E., Kaneko T., Miyajima N.,
Tabata S.;
"Structural analysis of Arabidopsis thaliana chromosome 5. VI.
Sequence features of the regions of 1,367,185 bp covered by 19
physically assigned P1 and TAC clones.";
DNA Res. 5:203-216(1998).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
[6]
FUNCTION.
PubMed=24267591; DOI=10.1111/tpj.12384;
Bai C., Rivera S.M., Medina V., Alves R., Vilaprinyo E., Sorribas A.,
Canela R., Capell T., Sandmann G., Christou P., Zhu C.;
"An in vitro system for the rapid functional characterization of genes
involved in carotenoid biosynthesis and accumulation.";
Plant J. 77:464-475(2014).
[7]
FUNCTION, INTERACTION WITH PSY1, SUBCELLULAR LOCATION, AND MUTAGENESIS
OF ARG-90.
PubMed=26224804; DOI=10.1104/pp.15.00971;
Yuan H., Owsiany K., Sheeja T.E., Zhou X., Rodriguez C., Li Y.,
Welsch R., Chayut N., Yang Y., Thannhauser T.W., Parthasarathy M.V.,
Xu Q., Deng X., Fei Z., Schaffer A., Katzir N., Burger J., Tadmor Y.,
Li L.;
"A single amino acid substitution in an ORANGE protein promotes
carotenoid overaccumulation in Arabidopsis.";
Plant Physiol. 169:421-431(2015).
[8]
SUBCELLULAR LOCATION.
PubMed=26634929; DOI=10.1007/s00709-015-0919-x;
Sun T.H., Zhou F., Liu C.J., Zhuang Z., Lu S.;
"The DnaJ-like zinc finger domain protein ORANGE localizes to the
nucleus in etiolated cotyledons of Arabidopsis thaliana.";
Protoplasma 253:1599-1604(2016).
[9]
FUNCTION, INTERACTION WITH PSY1, AND SUBCELLULAR LOCATION.
PubMed=25675505; DOI=10.1073/pnas.1420831112;
Zhou X., Welsch R., Yang Y., Alvarez D., Riediger M., Yuan H.,
Fish T., Liu J., Thannhauser T.W., Li L.;
"Arabidopsis OR proteins are the major posttranscriptional regulators
of phytoene synthase in controlling carotenoid biosynthesis.";
Proc. Natl. Acad. Sci. U.S.A. 112:3558-3563(2015).
[10]
FUNCTION.
PubMed=25857664; DOI=10.1111/pbi.12373;
Bai C., Capell T., Berman J., Medina V., Sandmann G., Christou P.,
Zhu C.;
"Bottlenecks in carotenoid biosynthesis and accumulation in rice
endosperm are influenced by the precursor-product balance.";
Plant Biotechnol. J. 14:195-205(2016).
-!- FUNCTION: Involved in chromoplast differentiation. Associated with
a cellular process that triggers the differentiation of pro-
plastids or other non-colored plastids into chromoplasts for
carotenoid accumulation (PubMed:24267591). Is associated with
carotenoid accumulation in chromoplasts (PubMed:26224804).
Functions as a major regulator of the phytoene synthase PSY1
protein level and activity. Modulates carotenoid biosynthesis by
means of post-transcriptional regulation of PSY1
(PubMed:25675505). Modulates carotenoid biosynthesis in part by
up-regulating a series of endogenous carotenogenic genes
(PubMed:25857664). {ECO:0000269|PubMed:24267591,
ECO:0000269|PubMed:25675505, ECO:0000269|PubMed:25857664,
ECO:0000269|PubMed:26224804}.
-!- SUBUNIT: Interacts with PSY1. {ECO:0000269|PubMed:26224804,
ECO:0000269|PubMed:26634929}.
-!- SUBCELLULAR LOCATION: Plastid, chloroplast membrane
{ECO:0000269|PubMed:25675505, ECO:0000269|PubMed:26224804,
ECO:0000305|PubMed:26634929}. Nucleus
{ECO:0000269|PubMed:26634929}. Note=Localizes in the nucleus in
etiolated cotyledons. {ECO:0000269|PubMed:26634929}.
-!- MISCELLANEOUS: Its sequence is related to the DnaJ family but
lacks the J domain. The CR-type-like region is similar to CR-type
zinc-fingers. {ECO:0000305}.
-!- SIMILARITY: Belongs to the orange-like family.
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EMBL; JF304772; AEA35046.1; -; mRNA.
EMBL; AB012239; BAB09011.1; -; Genomic_DNA.
EMBL; CP002688; AED97503.1; -; Genomic_DNA.
EMBL; CP002688; AED97504.1; -; Genomic_DNA.
EMBL; AY065401; AAL38842.1; -; mRNA.
EMBL; AY094431; AAM19804.1; -; mRNA.
EMBL; AY117226; AAM51301.1; -; mRNA.
EMBL; AY149953; AAN31107.1; -; mRNA.
EMBL; AY084568; AAM61134.1; -; mRNA.
RefSeq; NP_200975.1; NM_125561.4.
RefSeq; NP_974975.1; NM_203246.3.
UniGene; At.28655; -.
ProteinModelPortal; Q9FKF4; -.
STRING; 3702.AT5G61670.1; -.
PaxDb; Q9FKF4; -.
EnsemblPlants; AT5G61670.1; AT5G61670.1; AT5G61670.
EnsemblPlants; AT5G61670.2; AT5G61670.2; AT5G61670.
GeneID; 836289; -.
Gramene; AT5G61670.1; AT5G61670.1; AT5G61670.
Gramene; AT5G61670.2; AT5G61670.2; AT5G61670.
KEGG; ath:AT5G61670; -.
Araport; AT5G61670; -.
TAIR; locus:2151556; AT5G61670.
eggNOG; ENOG410IGZG; Eukaryota.
eggNOG; ENOG4110IJH; LUCA.
HOGENOM; HOG000265745; -.
OMA; TSCLCTG; -.
OrthoDB; EOG09360JWD; -.
PhylomeDB; Q9FKF4; -.
PRO; PR:Q9FKF4; -.
Proteomes; UP000006548; Chromosome 5.
ExpressionAtlas; Q9FKF4; baseline and differential.
GO; GO:0009507; C:chloroplast; IDA:TAIR.
GO; GO:0031969; C:chloroplast membrane; IEA:UniProtKB-SubCell.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:1904143; P:positive regulation of carotenoid biosynthetic process; IMP:TAIR.
GO; GO:0050821; P:protein stabilization; IMP:TAIR.
1: Evidence at protein level;
Chloroplast; Complete proteome; Membrane; Nucleus; Plastid;
Reference proteome; Repeat; Transit peptide; Transmembrane;
Transmembrane helix.
TRANSIT 1 55 Chloroplast. {ECO:0000255}.
CHAIN 56 307 Protein ORANGE, chloroplastic.
/FTId=PRO_0000438012.
TRANSMEM 146 166 Helical. {ECO:0000255}.
TRANSMEM 199 219 Helical. {ECO:0000255}.
REPEAT 230 237 CXXCXGXG motif. {ECO:0000305}.
REPEAT 241 248 CXXCXXXG motif. {ECO:0000305}.
REPEAT 274 281 CXXCXGXG motif. {ECO:0000305}.
REPEAT 285 292 CXXCXXXG motif. {ECO:0000305}.
REGION 208 299 CR-type-like. {ECO:0000305}.
MUTAGEN 90 90 R->F,K: No effect on the accumulation of
carotenoids.
{ECO:0000269|PubMed:26224804}.
MUTAGEN 90 90 R->H,A: Increased accumulation of
carotenoids.
{ECO:0000269|PubMed:26224804}.
SEQUENCE 307 AA; 33790 MW; CE0C55CDC7CD80BA CRC64;
MSSLGRILSV SYPPDPYTWR FSQYKLSSSL GRNRRLRWRF TALDPESSSL DSESSADKFA
SGFCIIEGPE TVQDFAKMQL QEIQDNIRSR RNKIFLHMEE VRRLRIQQRI KNTELGIINE
EQEHELPNFP SFIPFLPPLT AANLKVYYAT CFSLIAGIIL FGGLLAPTLE LKLGIGGTSY
ADFIQSLHLP MQLSQVDPIV ASFSGGAVGV ISALMVVEVN NVKQQEHKRC KYCLGTGYLA
CARCSSTGAL VLTEPVSAIA GGNHSLSPPK TERCSNCSGA GKVMCPTCLC TGMAMASEHD
PRIDPFD


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