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Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 (pTAC14) (EC 2.1.1.-) (Plastid-encoded RNA polymerase-associated protein 7) (PEP-associated protein 7)

 PTA14_ARATH             Reviewed;         483 AA.
Q84JF5; O49439; O49440; Q0WLK1; Q56YC9;
24-JUN-2015, integrated into UniProtKB/Swiss-Prot.
01-JUN-2003, sequence version 1.
25-APR-2018, entry version 104.
RecName: Full=Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 {ECO:0000303|PubMed:16326926};
Short=pTAC14 {ECO:0000303|PubMed:16326926};
EC=2.1.1.- {ECO:0000255|PROSITE-ProRule:PRU00190};
AltName: Full=Plastid-encoded RNA polymerase-associated protein 7 {ECO:0000303|PubMed:21949211};
Short=PEP-associated protein 7 {ECO:0000303|PubMed:21949211};
Flags: Precursor;
Name=PTAC14 {ECO:0000303|PubMed:16326926};
Synonyms=PAP7 {ECO:0000303|PubMed:21949211},
TAC14 {ECO:0000303|PubMed:16326926};
OrderedLocusNames=At4g20130 {ECO:0000312|Araport:AT4G20130};
ORFNames=F18F4 {ECO:0000312|EMBL:CAA16620.1},
F1C12.4 {ECO:0000312|EMBL:CAB79012.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702 {ECO:0000312|EMBL:AAO42203.1};
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617198; DOI=10.1038/47134;
Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G.,
Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N.,
Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M.,
Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M.,
Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T.,
Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I.,
Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P.,
Langham S.-A., McCullagh B., Bilham L., Robben J.,
van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F.,
Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E.,
Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W.,
Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P.,
Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H.,
De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R.,
van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S.,
Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R.,
Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S.,
Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H.,
Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S.,
Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A.,
Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R.,
Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S.,
Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E.,
Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A.,
Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T.,
Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C.,
Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S.,
Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K.,
Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L.,
Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J.,
Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J.,
Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D.,
Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D.,
Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C.,
Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C.,
Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R.,
Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S.,
Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A.,
Chen E., Marra M.A., Martienssen R., McCombie W.R.;
"Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana.";
Nature 402:769-777(1999).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases.
[5]
NOMENCLATURE.
PubMed=16326926; DOI=10.1105/tpc.105.036392;
Pfalz J., Liere K., Kandlbinder A., Dietz K.-J., Oelmueller R.;
"pTAC2, -6, and -12 are components of the transcriptionally active
plastid chromosome that are required for plastid gene expression.";
Plant Cell 18:176-197(2006).
[6]
IDENTIFICATION BY MASS SPECTROMETRY, AND SUBUNIT.
PubMed=21949211; DOI=10.1104/pp.111.184515;
Steiner S., Schroeter Y., Pfalz J., Pfannschmidt T.;
"Identification of essential subunits in the plastid-encoded RNA
polymerase complex reveals building blocks for proper plastid
development.";
Plant Physiol. 157:1043-1055(2011).
[7]
FUNCTION, DISRUPTION PHENOTYPE, INTERACTION WITH PTAC12, INDUCTION BY
LIGHT, SUBCELLULAR LOCATION, AND TISSUE SPECIFICITY.
STRAIN=cv. Columbia;
PubMed=22010110; DOI=10.1104/pp.111.184762;
Gao Z.-P., Yu Q.-B., Zhao T.-T., Ma Q., Chen G.-X., Yang Z.-N.;
"A functional component of the transcriptionally active chromosome
complex, Arabidopsis pTAC14, interacts with pTAC12/HEMERA and
regulates plastid gene expression.";
Plant Physiol. 157:1733-1745(2011).
[8]
REVIEW.
PubMed=22902688; DOI=10.4161/psb.21618;
Gao Z.-P., Chen G.-X., Yang Z.-N.;
"Regulatory role of Arabidopsis pTAC14 in chloroplast development and
plastid gene expression.";
Plant Signal. Behav. 7:1354-1356(2012).
[9]
INTERACTION WITH PTAC7.
PubMed=23082802; DOI=10.1111/j.1399-3054.2012.01718.x;
Yu Q.-B., Lu Y., Ma Q., Zhao T.-T., Huang C., Zhao H.-F., Zhang X.-L.,
Lv R.-H., Yang Z.-N.;
"TAC7, an essential component of the plastid transcriptionally active
chromosome complex, interacts with FLN1, TAC10, TAC12 and TAC14 to
regulate chloroplast gene expression in Arabidopsis thaliana.";
Physiol. Plantarum 148:408-421(2013).
-!- FUNCTION: Essential for chloroplast development, especially for
thylakoid formation. Involved in plastid gene expression, probably
by maintaining plastid-encoded RNA polymerase (PEP) activity.
{ECO:0000269|PubMed:22010110}.
-!- SUBUNIT: Component of the transcriptionally active chromosome
(TAC) complexes. Interacts with PTAC12 and PTAC7.
{ECO:0000269|PubMed:22010110, ECO:0000269|PubMed:23082802}.
-!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid
{ECO:0000269|PubMed:22010110}.
-!- TISSUE SPECIFICITY: Mostly expressed in leaves, flowers and
seedlings, and, to a lower extent, in stems and roots.
{ECO:0000269|PubMed:22010110}.
-!- INDUCTION: By light. {ECO:0000269|PubMed:22010110}.
-!- DISRUPTION PHENOTYPE: Seedling lethal, even with Suc as a carbon
source. Impaired thylakoid formation in the initial process of
chloroplast development leading to albino seedlings unable to grow
photoautotrophically. Reduced plastid-encoded RNA polymerase (PEP)
activity. {ECO:0000269|PubMed:22010110}.
-!- SIMILARITY: Belongs to the class V-like SAM-binding
methyltransferase superfamily. {ECO:0000255|PROSITE-
ProRule:PRU00190}.
-!- SEQUENCE CAUTION:
Sequence=CAA16620.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Sequence=CAA16621.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Sequence=CAB79012.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Sequence=CAB79013.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; AL021637; CAA16620.1; ALT_SEQ; Genomic_DNA.
EMBL; AL021637; CAA16621.1; ALT_SEQ; Genomic_DNA.
EMBL; AL161552; CAB79012.1; ALT_SEQ; Genomic_DNA.
EMBL; AL161552; CAB79013.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002687; AEE84278.1; -; Genomic_DNA.
EMBL; BT004184; AAO42203.1; -; mRNA.
EMBL; BT005475; AAO63895.1; -; mRNA.
EMBL; AK221394; BAD94330.1; -; mRNA.
EMBL; AK230198; BAF02006.1; -; mRNA.
EMBL; AK230206; BAF02014.1; -; mRNA.
PIR; T04896; T04896.
PIR; T04897; T04897.
RefSeq; NP_193746.3; NM_118132.5.
UniGene; At.32744; -.
ProteinModelPortal; Q84JF5; -.
IntAct; Q84JF5; 1.
MINT; Q84JF5; -.
STRING; 3702.AT4G20130.1; -.
PaxDb; Q84JF5; -.
EnsemblPlants; AT4G20130.1; AT4G20130.1; AT4G20130.
GeneID; 827759; -.
Gramene; AT4G20130.1; AT4G20130.1; AT4G20130.
KEGG; ath:AT4G20130; -.
Araport; AT4G20130; -.
TAIR; locus:2119822; AT4G20130.
eggNOG; ENOG410IQFZ; Eukaryota.
eggNOG; ENOG410ZB51; LUCA.
HOGENOM; HOG000005778; -.
InParanoid; Q84JF5; -.
OMA; PLELMIT; -.
OrthoDB; EOG0936079X; -.
PhylomeDB; Q84JF5; -.
PRO; PR:Q84JF5; -.
Proteomes; UP000006548; Chromosome 4.
ExpressionAtlas; Q84JF5; baseline and differential.
Genevisible; Q84JF5; AT.
GO; GO:0009507; C:chloroplast; IDA:TAIR.
GO; GO:0009534; C:chloroplast thylakoid; IDA:UniProtKB.
GO; GO:0009295; C:nucleoid; IDA:TAIR.
GO; GO:0009508; C:plastid chromosome; IDA:TAIR.
GO; GO:0000427; C:plastid-encoded plastid RNA polymerase complex; IDA:UniProtKB.
GO; GO:0016279; F:protein-lysine N-methyltransferase activity; IBA:GO_Central.
GO; GO:0009658; P:chloroplast organization; IMP:UniProtKB.
GO; GO:0018026; P:peptidyl-lysine monomethylation; IBA:GO_Central.
GO; GO:0042793; P:plastid transcription; IMP:UniProtKB.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW.
GO; GO:0009416; P:response to light stimulus; IEP:UniProtKB.
GO; GO:0010027; P:thylakoid membrane organization; IMP:UniProtKB.
Gene3D; 3.90.1420.10; -; 1.
InterPro; IPR015353; Rubisco_LSMT_subst-bd.
InterPro; IPR036464; Rubisco_LSMT_subst-bd_sf.
InterPro; IPR001214; SET_dom.
Pfam; PF09273; Rubis-subs-bind; 1.
Pfam; PF00856; SET; 1.
SUPFAM; SSF81822; SSF81822; 1.
PROSITE; PS50280; SET; 1.
1: Evidence at protein level;
Chloroplast; Complete proteome; Methyltransferase; Plastid;
Reference proteome; S-adenosyl-L-methionine; Thylakoid; Transcription;
Transcription regulation; Transferase; Transit peptide.
TRANSIT 1 62 Chloroplast. {ECO:0000255}.
CHAIN 63 483 Protein PLASTID TRANSCRIPTIONALLY ACTIVE
14. {ECO:0000255}.
/FTId=PRO_0000433436.
DOMAIN 80 325 SET. {ECO:0000255|PROSITE-
ProRule:PRU00190}.
BINDING 324 324 S-adenosyl-L-methionine.
{ECO:0000255|PROSITE-ProRule:PRU00190}.
CONFLICT 119 119 I -> V (in Ref. 4; BAD94330).
{ECO:0000305}.
CONFLICT 300 300 K -> R (in Ref. 4; BAD94330).
{ECO:0000305}.
CONFLICT 415 415 R -> S (in Ref. 4; BAF02006).
{ECO:0000305}.
SEQUENCE 483 AA; 55611 MW; BECC74FDB3BDF1CA CRC64;
MASSVSLQFL TNTFISKPQG FCNGIVSAPR PRSNLLRDRQ NGVRPIKVAS IETQPFPLFQ
SPASEESSSS ELETADPDFY KIGYVRSVRA YGVEFKEGPD GFGVYASKDI EPRRRARVIM
EIPLELMITI RQKHPWMFFP DIVPIGHPIF DIINSTDPEI DWDIRLACLL LFSFDRDDHF
WRLYGDFLPA ADECSSLLLA TEEDLAELQD PDLVSTIRQQ QKRILDFWEK NWHSGVPLKI
KRLAEDPERF IWAVSMAQTR CISMQTRVGA LVQELNMMIP YADMLNHSFE PNCFLHWRPK
DRMLEVMSNA GQDIKKGEEM TINYMPGQKN NMLMERYGFS TPVNPWDAIK FSGDSRIHLN
SFLSVFNIYG LPEEYYHDSE LSRGDTFVDG AVIAAARTLP TWSDIDLPPI PSAERKAVKE
LQDECRKMLA EYPTTAEQDQ KLLDSMSEAR TTFATAVKYR MHRKMFIGKI IKALDIYQER
LLY


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