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Protein POLLENLESS 3 (Protein MALE STERILE 5) (Protein THREE-DIVISION MUTANT 1)

 MS5_ARATH               Reviewed;         434 AA.
Q9SUC3; O65310; Q9SBJ5;
29-OCT-2014, integrated into UniProtKB/Swiss-Prot.
29-OCT-2014, sequence version 2.
25-APR-2018, entry version 110.
RecName: Full=Protein POLLENLESS 3 {ECO:0000303|Ref.2};
AltName: Full=Protein MALE STERILE 5 {ECO:0000303|PubMed:9750346};
AltName: Full=Protein THREE-DIVISION MUTANT 1 {ECO:0000303|PubMed:9451956};
Name=MS5 {ECO:0000303|PubMed:9750346};
Synonyms=TDM1 {ECO:0000303|PubMed:9451956};
OrderedLocusNames=At4g20900 {ECO:0000312|Araport:AT4G20900};
ORFNames=T13K14.60 {ECO:0000312|EMBL:CAB45885.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702 {ECO:0000312};
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, DISRUPTION PHENOTYPE,
SUBCELLULAR LOCATION, AND TISSUE SPECIFICITY.
STRAIN=cv. Wassilewskija;
PubMed=9750346; DOI=10.1046/j.1365-313X.1998.00216.x;
Glover J., Grelon M., Craig S., Chaudhury A., Dennis E.;
"Cloning and characterization of MS5 from Arabidopsis: a gene critical
in male meiosis.";
Plant J. 15:345-356(1998).
[2]
NUCLEOTIDE SEQUENCE [GENOMIC DNA], FUNCTION, DISRUPTION PHENOTYPE,
TISSUE SPECIFICITY, DEVELOPMENTAL STAGE, GENE FAMILY, AND
NOMENCLATURE.
STRAIN=cv. Landsberg erecta, and cv. Wassilewskija;
DOI=10.1007/s004970050158;
Sanders P.M., Bui A.Q., Weterings K., McIntire K.N., Hsu Y.-C.,
Lee P.Y., Truong M.T., Beals T.B., Goldberg R.B.;
"Anther developmental defects in Arabidopsis thaliana male-sterile
mutants.";
Sex. Plant Reprod. 11:297-322(1999).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617198; DOI=10.1038/47134;
Mayer K.F.X., Schueller C., Wambutt R., Murphy G., Volckaert G.,
Pohl T., Duesterhoeft A., Stiekema W., Entian K.-D., Terryn N.,
Harris B., Ansorge W., Brandt P., Grivell L.A., Rieger M.,
Weichselgartner M., de Simone V., Obermaier B., Mache R., Mueller M.,
Kreis M., Delseny M., Puigdomenech P., Watson M., Schmidtheini T.,
Reichert B., Portetelle D., Perez-Alonso M., Boutry M., Bancroft I.,
Vos P., Hoheisel J., Zimmermann W., Wedler H., Ridley P.,
Langham S.-A., McCullagh B., Bilham L., Robben J.,
van der Schueren J., Grymonprez B., Chuang Y.-J., Vandenbussche F.,
Braeken M., Weltjens I., Voet M., Bastiaens I., Aert R., Defoor E.,
Weitzenegger T., Bothe G., Ramsperger U., Hilbert H., Braun M.,
Holzer E., Brandt A., Peters S., van Staveren M., Dirkse W.,
Mooijman P., Klein Lankhorst R., Rose M., Hauf J., Koetter P.,
Berneiser S., Hempel S., Feldpausch M., Lamberth S., Van den Daele H.,
De Keyser A., Buysshaert C., Gielen J., Villarroel R., De Clercq R.,
van Montagu M., Rogers J., Cronin A., Quail M.A., Bray-Allen S.,
Clark L., Doggett J., Hall S., Kay M., Lennard N., McLay K., Mayes R.,
Pettett A., Rajandream M.A., Lyne M., Benes V., Rechmann S.,
Borkova D., Bloecker H., Scharfe M., Grimm M., Loehnert T.-H.,
Dose S., de Haan M., Maarse A.C., Schaefer M., Mueller-Auer S.,
Gabel C., Fuchs M., Fartmann B., Granderath K., Dauner D., Herzl A.,
Neumann S., Argiriou A., Vitale D., Liguori R., Piravandi E.,
Massenet O., Quigley F., Clabauld G., Muendlein A., Felber R.,
Schnabl S., Hiller R., Schmidt W., Lecharny A., Aubourg S.,
Chefdor F., Cooke R., Berger C., Monfort A., Casacuberta E.,
Gibbons T., Weber N., Vandenbol M., Bargues M., Terol J., Torres A.,
Perez-Perez A., Purnelle B., Bent E., Johnson S., Tacon D., Jesse T.,
Heijnen L., Schwarz S., Scholler P., Heber S., Francs P., Bielke C.,
Frishman D., Haase D., Lemcke K., Mewes H.-W., Stocker S.,
Zaccaria P., Bevan M., Wilson R.K., de la Bastide M., Habermann K.,
Parnell L., Dedhia N., Gnoj L., Schutz K., Huang E., Spiegel L.,
Sekhon M., Murray J., Sheet P., Cordes M., Abu-Threideh J.,
Stoneking T., Kalicki J., Graves T., Harmon G., Edwards J.,
Latreille P., Courtney L., Cloud J., Abbott A., Scott K., Johnson D.,
Minx P., Bentley D., Fulton B., Miller N., Greco T., Kemp K.,
Kramer J., Fulton L., Mardis E., Dante M., Pepin K., Hillier L.W.,
Nelson J., Spieth J., Ryan E., Andrews S., Geisel C., Layman D.,
Du H., Ali J., Berghoff A., Jones K., Drone K., Cotton M., Joshu C.,
Antonoiu B., Zidanic M., Strong C., Sun H., Lamar B., Yordan C.,
Ma P., Zhong J., Preston R., Vil D., Shekher M., Matero A., Shah R.,
Swaby I.K., O'Shaughnessy A., Rodriguez M., Hoffman J., Till S.,
Granat S., Shohdy N., Hasegawa A., Hameed A., Lodhi M., Johnson A.,
Chen E., Marra M.A., Martienssen R., McCombie W.R.;
"Sequence and analysis of chromosome 4 of the plant Arabidopsis
thaliana.";
Nature 402:769-777(1999).
[4]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[5]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=9451956; DOI=10.1023/A:1018497804129;
Ross K.J., Fransz P., Armstrong S.J., Vizir I., Mulligan B.,
Franklin F.C., Jones G.H.;
"Cytological characterization of four meiotic mutants of Arabidopsis
isolated from T-DNA-transformed lines.";
Chromosome Res. 5:551-559(1997).
[6]
REVIEW.
PubMed=10679449; DOI=10.1016/S1369-5266(99)00037-0;
Yang W.C., Sundaresan V.;
"Genetics of gametophyte biogenesis in Arabidopsis.";
Curr. Opin. Plant Biol. 3:53-57(2000).
[7]
FUNCTION, AND DISRUPTION PHENOTYPE.
PubMed=21119056; DOI=10.1105/tpc.110.078378;
Bulankova P., Riehs-Kearnan N., Nowack M.K., Schnittger A., Riha K.;
"Meiotic progression in Arabidopsis is governed by complex regulatory
interactions between SMG7, TDM1, and the meiosis I-specific cyclin
TAM.";
Plant Cell 22:3791-3803(2010).
-!- FUNCTION: Essential for male fertility, especially for microspore
and pollen grain production (PubMed:9750346, Ref.2). Involved in
the regulation of cell division after male meiosis I and II to
facilitate exit from meiosis and transition to G1 (PubMed:9451956,
PubMed:21119056). {ECO:0000269|PubMed:21119056,
ECO:0000269|PubMed:9451956, ECO:0000269|PubMed:9750346,
ECO:0000269|Ref.2}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000303|PubMed:9750346}.
-!- TISSUE SPECIFICITY: Expressed at low levels mostly in floral
organs during meiosis. Also barely detectable in leaves, stems and
roots. {ECO:0000269|PubMed:9750346, ECO:0000269|Ref.2}.
-!- DEVELOPMENTAL STAGE: Specifically localized within meiotic cells
in the anther locules, transiently, only during late meiosis.
{ECO:0000269|Ref.2}.
-!- DISRUPTION PHENOTYPE: Sterile plants with abnormal formation of
polyads during microsporogenesis, tetrads with more than four
pools of chromosomes, after male meiosis, due to an unusual and
abnormal cell division without further DNA or chromosome
replication after meiosis I and II, and leading to collapsed
pollen in flattened anthers (PubMed:9750346, Ref.2). Chromatin
recondensation and stretching after meiosis II characterized by a
dense microtubule network connecting haploid nuclei in the tetrad
stage rearranged into four bipolar spindles as chromatids
recondense, as if haploid nuclei entered a third meiotic division
(PubMed:9451956, PubMed:21119056). {ECO:0000269|PubMed:21119056,
ECO:0000269|PubMed:9451956, ECO:0000269|PubMed:9750346,
ECO:0000269|Ref.2}.
-!- SIMILARITY: Belongs to the MS5 protein family.
{ECO:0000305|PubMed:9750346, ECO:0000305|Ref.2}.
-!- SEQUENCE CAUTION:
Sequence=AEE84373.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Sequence=CAB45885.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
Sequence=CAB79090.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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-----------------------------------------------------------------------
EMBL; AF031607; AAC72541.1; -; Genomic_DNA.
EMBL; AF060248; AAC97106.1; -; Genomic_DNA.
EMBL; AL080282; CAB45885.1; ALT_SEQ; Genomic_DNA.
EMBL; AL161553; CAB79090.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002687; AEE84373.1; ALT_SEQ; Genomic_DNA.
EMBL; CP002687; ANM66435.1; -; Genomic_DNA.
PIR; T10632; T10632.
RefSeq; NP_001328331.1; NM_001341460.1.
RefSeq; NP_193822.1; NM_118208.1.
UniGene; At.54444; -.
ProteinModelPortal; Q9SUC3; -.
SMR; Q9SUC3; -.
STRING; 3702.AT4G20900.1; -.
iPTMnet; Q9SUC3; -.
PaxDb; Q9SUC3; -.
EnsemblPlants; AT4G20900.2; AT4G20900.2; AT4G20900.
GeneID; 827838; -.
Gramene; AT4G20900.2; AT4G20900.2; AT4G20900.
KEGG; ath:AT4G20900; -.
Araport; AT4G20900; -.
TAIR; locus:2133099; AT4G20900.
eggNOG; ENOG410IEYU; Eukaryota.
eggNOG; ENOG4110VSD; LUCA.
HOGENOM; HOG000152531; -.
InParanoid; Q9SUC3; -.
OrthoDB; EOG0936059D; -.
PRO; PR:Q9SUC3; -.
Proteomes; UP000006548; Chromosome 4.
ExpressionAtlas; Q9SUC3; baseline and differential.
Genevisible; Q9SUC3; AT.
GO; GO:0005634; C:nucleus; ISS:TAIR.
GO; GO:0051301; P:cell division; IEA:UniProtKB-KW.
GO; GO:0007140; P:male meiotic nuclear division; IMP:UniProtKB.
GO; GO:0051321; P:meiotic cell cycle; IMP:UniProtKB.
GO; GO:0009556; P:microsporogenesis; IMP:UniProtKB.
Gene3D; 1.25.40.10; -; 1.
InterPro; IPR013026; TPR-contain_dom.
InterPro; IPR011990; TPR-like_helical_dom_sf.
InterPro; IPR019734; TPR_repeat.
SMART; SM00028; TPR; 1.
SUPFAM; SSF48452; SSF48452; 2.
PROSITE; PS50005; TPR; 1.
PROSITE; PS50293; TPR_REGION; 1.
2: Evidence at transcript level;
Cell cycle; Cell division; Coiled coil; Complete proteome;
Developmental protein; Meiosis; Nucleus; Reference proteome; Repeat;
TPR repeat.
CHAIN 1 434 Protein POLLENLESS 3.
/FTId=PRO_0000430653.
REPEAT 95 131 TPR 1. {ECO:0000255|PROSITE-
ProRule:PRU00339}.
REPEAT 133 164 TPR 2. {ECO:0000255|PROSITE-
ProRule:PRU00339}.
REPEAT 191 224 TPR 3. {ECO:0000255|PROSITE-
ProRule:PRU00339}.
REPEAT 241 274 TPR 4. {ECO:0000255|PROSITE-
ProRule:PRU00339}.
COILED 142 166 {ECO:0000255}.
COILED 408 434 {ECO:0000255}.
MOTIF 34 37 Nuclear localization signal 1.
{ECO:0000303|PubMed:9750346}.
MOTIF 377 380 Nuclear localization signal 2.
{ECO:0000303|PubMed:9750346}.
COMPBIAS 40 45 Poly-Ser. {ECO:0000255}.
COMPBIAS 413 423 Poly-Glu. {ECO:0000255}.
CONFLICT 25 25 H -> D (in Ref. 1; AAC72541).
CONFLICT 410 411 DI -> NF (in Ref. 2; AAC97106).
SEQUENCE 434 AA; 49216 MW; A65CF0C7E91F9BD7 CRC64;
MCPCVERRAP PGVYYTPPPA RTSDHVAAMP MTERRRPPYS CSSSSERRDP FHIVHKVPSG
DSPYVRAKHA QLIDKDPNRA ISLFWTAINA GDRVDSALKD MAVVMKQLGR SDEGIEAIKS
FRYLCSFESQ DSIDNLLLEL YKKSGRIEEE AVLLEHKLQT LEQGMGFGGR VSRAKRVQGK
HVIMTIEQEK ARILGNLGWV HLQLHNYGIA EQHYRRALGL ERDKNKLCNL AICLMRMSRI
PEAKSLLDDV RDSPAESECG DEPFAKSYDR AVEMLAEIES KKPEADLSEK FYAGCSFVNR
MKENIAPGTA NKNYSDVSSS PASVRPNSAG LYTQPRRCRL FEEETRGAAR KLLFGKPQPF
GSEQMKILER GEEEPMKRKK LDQNMIQYLH EFVKDTADGP KSESKKSWAD IAEEEEAEEE
EEERLQGELK TAEM


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