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Protein SHQ1 (Small nucleolar RNAs of the box H/ACA family quantitative accumulation protein 1)

 SHQ1_YEAST              Reviewed;         507 AA.
P40486; D6VVI3;
01-FEB-1995, integrated into UniProtKB/Swiss-Prot.
01-FEB-1995, sequence version 1.
05-DEC-2018, entry version 138.
RecName: Full=Protein SHQ1;
AltName: Full=Small nucleolar RNAs of the box H/ACA family quantitative accumulation protein 1;
Name=SHQ1; OrderedLocusNames=YIL104C;
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
NCBI_TaxID=559292;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 204508 / S288c;
PubMed=9169870;
Churcher C.M., Bowman S., Badcock K., Bankier A.T., Brown D.,
Chillingworth T., Connor R., Devlin K., Gentles S., Hamlin N.,
Harris D.E., Horsnell T., Hunt S., Jagels K., Jones M., Lye G.,
Moule S., Odell C., Pearson D., Rajandream M.A., Rice P., Rowley N.,
Skelton J., Smith V., Walsh S.V., Whitehead S., Barrell B.G.;
"The nucleotide sequence of Saccharomyces cerevisiae chromosome IX.";
Nature 387:84-87(1997).
[2]
GENOME REANNOTATION.
STRAIN=ATCC 204508 / S288c;
PubMed=24374639; DOI=10.1534/g3.113.008995;
Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R.,
Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S.,
Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M.,
Cherry J.M.;
"The reference genome sequence of Saccharomyces cerevisiae: Then and
now.";
G3 (Bethesda) 4:389-398(2014).
[3]
FUNCTION, SUBCELLULAR LOCATION, AND INTERACTION WITH CBF5; NAF1 AND
NHP2.
PubMed=12228251; DOI=10.1074/jbc.M207669200;
Yang P.K., Rotondo G., Porras T., Legrain P., Chanfreau G.;
"The Shq1p.Naf1p complex is required for box H/ACA small nucleolar
ribonucleoprotein particle biogenesis.";
J. Biol. Chem. 277:45235-45242(2002).
[4]
SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
PubMed=14562095; DOI=10.1038/nature02026;
Huh W.-K., Falvo J.V., Gerke L.C., Carroll A.S., Howson R.W.,
Weissman J.S., O'Shea E.K.;
"Global analysis of protein localization in budding yeast.";
Nature 425:686-691(2003).
[5]
LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
PubMed=14562106; DOI=10.1038/nature02046;
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A.,
Dephoure N., O'Shea E.K., Weissman J.S.;
"Global analysis of protein expression in yeast.";
Nature 425:737-741(2003).
[6]
INTERACTION WITH NAF1.
PubMed=15798213; DOI=10.1128/MCB.25.8.3295-3304.2005;
Yang P.K., Hoareau C., Froment C., Monsarrat B., Henry Y.,
Chanfreau G.;
"Cotranscriptional recruitment of the pseudouridylsynthetase Cbf5p and
of the RNA binding protein Naf1p during H/ACA snoRNP assembly.";
Mol. Cell. Biol. 25:3295-3304(2005).
-!- FUNCTION: Involved in the early biogenesis steps of box H/ACA
snoRNP assembly. {ECO:0000269|PubMed:12228251}.
-!- SUBUNIT: Interacts with CBF5, NAF1 and NHP2. The interaction with
NAF1 and SHQ1 does not occur when NAF1 is associated with the
chromatin. {ECO:0000269|PubMed:12228251,
ECO:0000269|PubMed:15798213}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:12228251,
ECO:0000269|PubMed:14562095}.
-!- MISCELLANEOUS: Present with 7060 molecules/cell in log phase SD
medium. {ECO:0000269|PubMed:14562106}.
-!- SIMILARITY: Belongs to the SHQ1 family. {ECO:0000305}.
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EMBL; Z38125; CAA86276.1; -; Genomic_DNA.
EMBL; BK006942; DAA08449.1; -; Genomic_DNA.
PIR; S48468; S48468.
RefSeq; NP_012162.3; NM_001179452.3.
PDB; 2K8Q; NMR; -; A=1-134.
PDB; 3EUD; X-ray; 2.40 A; A/B/C/D/E/F=1-98.
PDB; 3UAH; X-ray; 1.60 A; A=147-507.
PDB; 3UAI; X-ray; 3.06 A; D=147-507.
PDB; 3ZUZ; X-ray; 1.50 A; A=143-507.
PDB; 3ZV0; X-ray; 2.80 A; A/B=145-507.
PDBsum; 2K8Q; -.
PDBsum; 3EUD; -.
PDBsum; 3UAH; -.
PDBsum; 3UAI; -.
PDBsum; 3ZUZ; -.
PDBsum; 3ZV0; -.
ProteinModelPortal; P40486; -.
SMR; P40486; -.
BioGrid; 34887; 97.
DIP; DIP-4970N; -.
IntAct; P40486; 11.
MINT; P40486; -.
STRING; 4932.YIL104C; -.
MaxQB; P40486; -.
PaxDb; P40486; -.
PRIDE; P40486; -.
EnsemblFungi; YIL104C_mRNA; YIL104C_mRNA; YIL104C.
GeneID; 854702; -.
KEGG; sce:YIL104C; -.
SGD; S000001366; SHQ1.
GeneTree; ENSGT00390000007605; -.
HOGENOM; HOG000248098; -.
InParanoid; P40486; -.
KO; K14764; -.
OMA; ITDYCIW; -.
OrthoDB; EOG092C4P2X; -.
BioCyc; YEAST:G3O-31360-MONOMER; -.
EvolutionaryTrace; P40486; -.
PRO; PR:P40486; -.
Proteomes; UP000002311; Chromosome IX.
GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
GO; GO:0005829; C:cytosol; IDA:SGD.
GO; GO:0005654; C:nucleoplasm; IDA:SGD.
GO; GO:0005634; C:nucleus; IDA:SGD.
GO; GO:0051082; F:unfolded protein binding; IDA:SGD.
GO; GO:0000493; P:box H/ACA snoRNP assembly; IMP:SGD.
Gene3D; 2.60.40.790; -; 1.
InterPro; IPR007052; CS_dom.
InterPro; IPR008978; HSP20-like_chaperone.
InterPro; IPR039742; Shq1.
InterPro; IPR007009; Shq1_dom.
PANTHER; PTHR12967; PTHR12967; 1.
Pfam; PF04925; SHQ1; 1.
SUPFAM; SSF49764; SSF49764; 1.
PROSITE; PS51203; CS; 1.
1: Evidence at protein level;
3D-structure; Complete proteome; Nucleus; Reference proteome.
CHAIN 1 507 Protein SHQ1.
/FTId=PRO_0000202966.
DOMAIN 1 91 CS. {ECO:0000255|PROSITE-
ProRule:PRU00547}.
STRAND 6 10 {ECO:0000244|PDB:3EUD}.
STRAND 12 20 {ECO:0000244|PDB:3EUD}.
STRAND 28 30 {ECO:0000244|PDB:3EUD}.
STRAND 32 36 {ECO:0000244|PDB:3EUD}.
STRAND 39 44 {ECO:0000244|PDB:3EUD}.
STRAND 47 52 {ECO:0000244|PDB:3EUD}.
STRAND 64 68 {ECO:0000244|PDB:3EUD}.
TURN 69 72 {ECO:0000244|PDB:3EUD}.
STRAND 73 82 {ECO:0000244|PDB:3EUD}.
HELIX 93 96 {ECO:0000244|PDB:3EUD}.
HELIX 172 174 {ECO:0000244|PDB:3ZUZ}.
HELIX 179 184 {ECO:0000244|PDB:3ZUZ}.
TURN 185 187 {ECO:0000244|PDB:3ZUZ}.
HELIX 196 198 {ECO:0000244|PDB:3ZUZ}.
HELIX 201 215 {ECO:0000244|PDB:3ZUZ}.
HELIX 218 230 {ECO:0000244|PDB:3ZUZ}.
HELIX 233 239 {ECO:0000244|PDB:3ZUZ}.
HELIX 241 245 {ECO:0000244|PDB:3ZUZ}.
HELIX 250 259 {ECO:0000244|PDB:3ZUZ}.
HELIX 275 284 {ECO:0000244|PDB:3ZUZ}.
HELIX 296 315 {ECO:0000244|PDB:3ZUZ}.
TURN 316 318 {ECO:0000244|PDB:3ZUZ}.
HELIX 324 331 {ECO:0000244|PDB:3ZUZ}.
HELIX 333 336 {ECO:0000244|PDB:3ZUZ}.
HELIX 364 376 {ECO:0000244|PDB:3ZUZ}.
STRAND 379 381 {ECO:0000244|PDB:3ZUZ}.
HELIX 385 401 {ECO:0000244|PDB:3ZUZ}.
HELIX 403 418 {ECO:0000244|PDB:3ZUZ}.
TURN 421 424 {ECO:0000244|PDB:3ZUZ}.
HELIX 425 429 {ECO:0000244|PDB:3ZUZ}.
HELIX 431 441 {ECO:0000244|PDB:3ZUZ}.
HELIX 444 460 {ECO:0000244|PDB:3ZUZ}.
HELIX 463 465 {ECO:0000244|PDB:3ZUZ}.
STRAND 467 471 {ECO:0000244|PDB:3ZUZ}.
TURN 476 478 {ECO:0000244|PDB:3ZV0}.
STRAND 483 487 {ECO:0000244|PDB:3ZUZ}.
HELIX 488 504 {ECO:0000244|PDB:3ZUZ}.
SEQUENCE 507 AA; 59151 MW; 15A6A66C66E70C39 CRC64;
MITPRFSITQ DEEFIFLKIF ISNIRFSAVG LEIIIQENMI IFHLSPYYLR LRFPHELIDD
ERSTAQYDSK DECINVKVAK LNKNEYFEDL DLPTKLLARQ GDLAGADALT ENTDAKKTQK
PLIQEVETDG VSNNIKDDVK TIGQMGEGFN WEIEQKMDSS TNNGILKTKY GFDNLYDTVI
SVSTSNGNDI NELDDPEHTD ANDRVIERLR KENLKFDPEY YVSEYMTHKY GNEEDLEING
IKELLKFTPS IVKQYLQWYK DSTNPNLVMP IEFTDEEQKQ MQDNLPKKSY LVEDIKPLYV
TILSVLFSYV FEQIENEGTH TTESAWTMGK LCPQISFLDQ QLKQVNELQD GMKEISKVNK
DSSLIKIAII TGIRRALSYP LHRNYDLAMK AWTFVYYILR GGKRLVIRAL LDIHETFRFH
DVYYVYDKVL LDDLTAWFIS QGSENVIRSL ALEMRKEQES LSKQDIEFEC IASFNEQTGE
PEWETLNIRE MEILAESEYR EQQQNPQ


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