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Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 (NaKR1) (Heavy metal-associated plant protein 2) (AtHPP02) (Nuclear-enriched phloem companion cell gene 6) (NPCC6)

 NAKR1_ARATH             Reviewed;         319 AA.
Q8LDS4; Q9LZ42;
05-OCT-2016, integrated into UniProtKB/Swiss-Prot.
01-OCT-2002, sequence version 1.
25-OCT-2017, entry version 101.
RecName: Full=Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 {ECO:0000303|PubMed:21193571};
Short=NaKR1 {ECO:0000303|PubMed:21193571};
AltName: Full=Heavy metal-associated plant protein 2 {ECO:0000303|PubMed:23368984};
Short=AtHPP02 {ECO:0000303|PubMed:23368984};
AltName: Full=Nuclear-enriched phloem companion cell gene 6 {ECO:0000303|PubMed:18354040};
Short=NPCC6 {ECO:0000303|PubMed:18354040};
Name=NAKR1 {ECO:0000303|PubMed:21193571};
Synonyms=HPP02 {ECO:0000303|PubMed:23368984},
NPCC6 {ECO:0000303|PubMed:18354040};
OrderedLocusNames=At5g02600 {ECO:0000312|Araport:AT5G02600};
ORFNames=T22P11_190 {ECO:0000312|EMBL:CAB85997.1};
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=11130714; DOI=10.1038/35048507;
Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K.,
Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S.,
Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T.,
Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M.,
Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R.,
Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J.,
Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M.,
Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M.,
Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P.,
Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C.,
Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N.,
Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J.,
Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S.,
Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W.,
Ramsperger U., Wedler H., Balke K., Wedler E., Peters S.,
van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R.,
Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S.,
Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W.,
Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H.,
Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.;
"Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana.";
Nature 408:823-826(2000).
[2]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
The Arabidopsis Information Portal (Araport);
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=11910074; DOI=10.1126/science.1071006;
Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M.,
Hayashizaki Y., Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T.,
Shibata K., Shinagawa A., Shinozaki K.;
"Functional annotation of a full-length Arabidopsis cDNA collection.";
Science 296:141-145(2002).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
Totoki Y., Seki M., Ishida J., Nakajima M., Enju A., Kamiya A.,
Narusaka M., Shin-i T., Nakagawa M., Sakamoto N., Oishi K., Kohara Y.,
Kobayashi M., Toyoda A., Sakaki Y., Sakurai T., Iida K., Akiyama K.,
Satou M., Toyoda T., Konagaya A., Carninci P., Kawai J.,
Hayashizaki Y., Shinozaki K.;
"Large-scale analysis of RIKEN Arabidopsis full-length (RAFL) cDNAs.";
Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
Feldmann K.A.;
"Full-length cDNA from Arabidopsis thaliana.";
Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
[7]
TISSUE SPECIFICITY.
PubMed=18354040; DOI=10.1104/pp.107.115246;
Zhang C., Barthelson R.A., Lambert G.M., Galbraith D.W.;
"Global characterization of cell-specific gene expression through
fluorescence-activated sorting of nuclei.";
Plant Physiol. 147:30-40(2008).
[8]
FUNCTION, MUTAGENESIS OF CYS-260 AND CYS-263, GENE FAMILY,
NOMENCLATURE, TISSUE SPECIFICITY, SUBCELLULAR LOCATION, DEVELOPMENTAL
STAGE, AND METAL BINDING.
PubMed=21193571; DOI=10.1105/tpc.110.080010;
Tian H., Baxter I.R., Lahner B., Reinders A., Salt D.E., Ward J.M.;
"Arabidopsis NPCC6/NaKR1 is a phloem mobile metal binding protein
necessary for phloem function and root meristem maintenance.";
Plant Cell 22:3963-3979(2010).
[9]
GENE FAMILY, AND NOMENCLATURE.
PubMed=23368984; DOI=10.1111/febs.12159;
de Abreu-Neto J.B., Turchetto-Zolet A.C., de Oliveira L.F.,
Zanettini M.H., Margis-Pinheiro M.;
"Heavy metal-associated isoprenylated plant protein (HIPP):
characterization of a family of proteins exclusive to plants.";
FEBS J. 280:1604-1616(2013).
[10]
FUNCTION, INDUCTION, INTERACTION WITH FT, LACK OF INTERACTION WITH
TSF, TISSUE SPECIFICITY, AND SUBCELLULAR LOCATION.
PubMed=27255839; DOI=10.1038/nplants.2016.75;
Zhu Y., Liu L., Shen L., Yu H.;
"NaKR1 regulates long-distance movement of FLOWERING LOCUS T in
Arabidopsis.";
Nat. Plants 2:16075-16075(2016).
-!- FUNCTION: Required for root meristem maintenance after germination
(PubMed:21193571). Involved in phloem translocation, starch
accumulation and flowering (PubMed:21193571). Promotes flowering
in the photoperiod pathway (PubMed:27255839). Regulates long-
distance movement of FT from leaves to the shoot apex through the
phloem stream (PubMed:27255839). {ECO:0000269|PubMed:21193571,
ECO:0000269|PubMed:27255839}.
-!- SUBUNIT: Interacts with FT, but not with TSF (TWIN SISTER OF FT).
{ECO:0000269|PubMed:27255839}.
-!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:21193571}.
Nucleus {ECO:0000269|PubMed:21193571,
ECO:0000269|PubMed:27255839}. Endoplasmic reticulum
{ECO:0000269|PubMed:27255839}. Note=Mobile through plasmodesmata.
{ECO:0000269|PubMed:21193571}.
-!- TISSUE SPECIFICITY: Expressed in vascular tissues of cotyledons,
rosette leaves and roots in developing seedlings before and during
the floral transition (PubMed:27255839). Expressed specifically in
the phloem companion cells (PubMed:18354040, PubMed:21193571). Not
detected in embryos or seeds (PubMed:21193571). Not detected in
the vegetative shoot apex (PubMed:27255839).
{ECO:0000269|PubMed:18354040, ECO:0000269|PubMed:21193571,
ECO:0000269|PubMed:27255839}.
-!- DEVELOPMENTAL STAGE: Start to be expressed 1 day after germination
(DAG) in the vascular tissue at the root-hypocotyl junction.
{ECO:0000269|PubMed:21193571}.
-!- INDUCTION: Circadian-regulation (PubMed:27255839). Up-regulated by
CO in leaves in response to long days (PubMed:27255839).
{ECO:0000269|PubMed:27255839}.
-!- SEQUENCE CAUTION:
Sequence=CAB85997.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};
-----------------------------------------------------------------------
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EMBL; AL162971; CAB85997.1; ALT_INIT; Genomic_DNA.
EMBL; CP002688; AED90495.1; -; Genomic_DNA.
EMBL; CP002688; AED90496.1; -; Genomic_DNA.
EMBL; AK117227; BAC41903.1; -; mRNA.
EMBL; BT008344; AAP37703.1; -; mRNA.
EMBL; AK221722; BAD93718.1; -; mRNA.
EMBL; AY085833; AAM63048.1; -; mRNA.
PIR; T48281; T48281.
RefSeq; NP_568105.1; NM_120338.4.
RefSeq; NP_974723.1; NM_202994.3.
UniGene; At.23074; -.
UniGene; At.33398; -.
ProteinModelPortal; Q8LDS4; -.
SMR; Q8LDS4; -.
STRING; 3702.AT5G02600.1; -.
iPTMnet; Q8LDS4; -.
PaxDb; Q8LDS4; -.
PRIDE; Q8LDS4; -.
EnsemblPlants; AT5G02600.1; AT5G02600.1; AT5G02600.
EnsemblPlants; AT5G02600.2; AT5G02600.2; AT5G02600.
GeneID; 831874; -.
Gramene; AT5G02600.1; AT5G02600.1; AT5G02600.
Gramene; AT5G02600.2; AT5G02600.2; AT5G02600.
KEGG; ath:AT5G02600; -.
Araport; AT5G02600; -.
TAIR; locus:2181718; AT5G02600.
eggNOG; KOG1603; Eukaryota.
eggNOG; COG2608; LUCA.
HOGENOM; HOG000238702; -.
OMA; PPPMENN; -.
OrthoDB; EOG09360OWO; -.
PhylomeDB; Q8LDS4; -.
PRO; PR:Q8LDS4; -.
Proteomes; UP000006548; Chromosome 5.
ExpressionAtlas; Q8LDS4; baseline and differential.
GO; GO:0005737; C:cytoplasm; IDA:TAIR.
GO; GO:0005783; C:endoplasmic reticulum; IEA:UniProtKB-SubCell.
GO; GO:0005634; C:nucleus; IDA:TAIR.
GO; GO:0046872; F:metal ion binding; IDA:TAIR.
GO; GO:0046914; F:transition metal ion binding; IBA:GO_Central.
GO; GO:0046916; P:cellular transition metal ion homeostasis; IBA:GO_Central.
GO; GO:0009908; P:flower development; IMP:TAIR.
GO; GO:0030001; P:metal ion transport; IBA:GO_Central.
GO; GO:0010233; P:phloem transport; IMP:TAIR.
GO; GO:0010015; P:root morphogenesis; IMP:TAIR.
GO; GO:0055078; P:sodium ion homeostasis; IMP:TAIR.
CDD; cd00371; HMA; 1.
InterPro; IPR006121; HMA_dom.
InterPro; IPR036163; HMA_dom_sf.
Pfam; PF00403; HMA; 1.
SUPFAM; SSF55008; SSF55008; 1.
PROSITE; PS50846; HMA_2; 1.
1: Evidence at protein level;
Complete proteome; Cytoplasm; Endoplasmic reticulum; Metal-binding;
Nucleus; Reference proteome.
CHAIN 1 319 Protein SODIUM POTASSIUM ROOT DEFECTIVE
1.
/FTId=PRO_0000437273.
DOMAIN 250 307 HMA. {ECO:0000255|PROSITE-
ProRule:PRU00280}.
COMPBIAS 23 27 Poly-Ser. {ECO:0000255}.
COMPBIAS 61 66 Poly-Ser. {ECO:0000255}.
COMPBIAS 225 242 Pro-rich. {ECO:0000255|PROSITE-
ProRule:PRU00015}.
METAL 260 260 Heavy metal. {ECO:0000255|PROSITE-
ProRule:PRU00280,
ECO:0000305|PubMed:21193571}.
METAL 263 263 Heavy metal. {ECO:0000255|PROSITE-
ProRule:PRU00280,
ECO:0000305|PubMed:21193571}.
MUTAGEN 260 260 C->G: Loss of metal binding; when
associated with G-263.
{ECO:0000269|PubMed:21193571}.
MUTAGEN 263 263 C->G: Loss of metal binding; when
associated with G-260.
{ECO:0000269|PubMed:21193571}.
SEQUENCE 319 AA; 34509 MW; 529F386C7DDE9AFC CRC64;
MLCASQASTT TLCSTMDQTS QPSSSSSATI RLGGRAIDRH NPIIRDGRRL TPPPSPNLNP
SSSSSSTYHT PLMTRLGLES SEQKRLAKRK SKKGDSDVGK SPVSCFSSDT PQGSSRYLLS
NPVFFDGFVD SDPIPIPIDE PEITKADDLN NFHEDRLIIN ASKYLSTSAS FLEKKQPDFF
EGFLDYEPVL SPDNPFSEPT KASPTASLSS LEDKDVSSPD FKFSPPPPPP PSPPQSSPPS
PPEKNSSSDQ VVVLRVSLHC KGCAGKVKKH LSKLKGVTSY NIDFAAKKVT VTGDVTPLTV
LASISKVKNA QFWPEIIQK


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