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Protein STAY-GREEN, chloroplastic (Protein STAYGREEN)

 SGR_ORYSJ               Reviewed;         274 AA.
Q652K1; A0A0P0XPI7; A3C0X0;
19-FEB-2014, integrated into UniProtKB/Swiss-Prot.
25-OCT-2004, sequence version 1.
23-MAY-2018, entry version 84.
RecName: Full=Protein STAY-GREEN, chloroplastic;
AltName: Full=Protein STAYGREEN;
Flags: Precursor;
Name=SGR; OrderedLocusNames=Os09g0532000, LOC_Os09g36200;
ORFNames=OJ1254_E07.23, P0515E01.8;
Oryza sativa subsp. japonica (Rice).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade;
Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
NCBI_TaxID=39947;
[1]
NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, MUTAGENESIS OF VAL-99, INDUCTION
BY 6-BENZYLADENINE, DEVELOPMENTAL STAGE, SUBCELLULAR LOCATION, AND
INTERACTION WITH LHCPII COMPLEX.
STRAIN=cv. Hwacheong;
PubMed=17513504; DOI=10.1105/tpc.106.044891;
Park S.Y., Yu J.W., Park J.S., Li J., Yoo S.C., Lee N.Y., Lee S.K.,
Jeong S.W., Seo H.S., Koh H.J., Jeon J.S., Park Y.I., Paek N.C.;
"The senescence-induced staygreen protein regulates chlorophyll
degradation.";
Plant Cell 19:1649-1664(2007).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
PubMed=16100779; DOI=10.1038/nature03895;
International rice genome sequencing project (IRGSP);
"The map-based sequence of the rice genome.";
Nature 436:793-800(2005).
[3]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
PubMed=18089549; DOI=10.1093/nar/gkm978;
The rice annotation project (RAP);
"The rice annotation project database (RAP-DB): 2008 update.";
Nucleic Acids Res. 36:D1028-D1033(2008).
[4]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
PubMed=24280374; DOI=10.1186/1939-8433-6-4;
Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H.,
McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S.,
Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L.,
Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T.,
Buell C.R., Matsumoto T.;
"Improvement of the Oryza sativa Nipponbare reference genome using
next generation sequence and optical map data.";
Rice 6:4-4(2013).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H.,
Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J.,
Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X.,
Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y.,
Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J.,
Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y.,
Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y.,
Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z.,
Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T.,
Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H.,
Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J.,
Samudrala R., Wang J., Wong G.K.-S., Yang H.;
"The genomes of Oryza sativa: a history of duplications.";
PLoS Biol. 3:266-281(2005).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Nipponbare;
PubMed=12869764; DOI=10.1126/science.1081288;
The rice full-length cDNA consortium;
"Collection, mapping, and annotation of over 28,000 cDNA clones from
japonica rice.";
Science 301:376-379(2003).
[7]
FUNCTION, MUTAGENESIS OF TYR-84, SUBCELLULAR LOCATION, TISSUE
SPECIFICITY, INDUCTION BY DARK-INDUCED SENESCENCE; ABSCISIC ACID AND
6-BENZYLADENINE, AND DEVELOPMENTAL STAGE.
PubMed=17714430; DOI=10.1111/j.1365-313X.2007.03221.x;
Jiang H., Li M., Liang N., Yan H., Wei Y., Xu X., Liu J., Xu Z.,
Chen F., Wu G.;
"Molecular cloning and function analysis of the stay green gene in
rice.";
Plant J. 52:197-209(2007).
[8]
FUNCTION, MUTAGENESIS OF ASN-194, AND DISRUPTION PHENOTYPE.
PubMed=17709752; DOI=10.1073/pnas.0705521104;
Sato Y., Morita R., Nishimura M., Yamaguchi H., Kusaba M.;
"Mendel's green cotyledon gene encodes a positive regulator of the
chlorophyll-degrading pathway.";
Proc. Natl. Acad. Sci. U.S.A. 104:14169-14174(2007).
[9]
DEVELOPMENTAL STAGE, AND INDUCTION BY DARK-INDUCED SENESCENCE.
PubMed=23816327; DOI=10.1016/j.jplph.2013.05.016;
Rong H., Tang Y., Zhang H., Wu P., Chen Y., Li M., Wu G., Jiang H.;
"The Stay-Green Rice like (SGRL) gene regulates chlorophyll
degradation in rice.";
J. Plant Physiol. 170:1367-1373(2013).
-!- FUNCTION: Involved in the disassembling mechanism of the intact
light-harvesting complex of photosystem II (LHCII) in the
thylakoid membranes. Required to trigger chlorophyll degradation
during natural and dark-induced leaf senescence.
{ECO:0000269|PubMed:17513504, ECO:0000269|PubMed:17709752,
ECO:0000269|PubMed:17714430}.
-!- SUBUNIT: Interacts with LHCII complex.
{ECO:0000269|PubMed:17513504}.
-!- SUBCELLULAR LOCATION: Plastid, chloroplast membrane. Plastid,
chloroplast stroma.
-!- TISSUE SPECIFICITY: Expressed in leaves, roots and developing
seeds. {ECO:0000269|PubMed:17714430}.
-!- DEVELOPMENTAL STAGE: Constitutively expressed at low level during
leaf development, but up-regulated during senescence, when the
leaf color changes from green to yellow.
{ECO:0000269|PubMed:17513504, ECO:0000269|PubMed:17714430,
ECO:0000269|PubMed:23816327}.
-!- INDUCTION: Up-regulated by abscisic acid and dark-induced
senescence. Down-regulated by 6-benzyladenine. Circadian-
regulation with an increased expression during the day and a peak
at noon. {ECO:0000269|PubMed:17513504,
ECO:0000269|PubMed:17714430, ECO:0000269|PubMed:23816327}.
-!- DISRUPTION PHENOTYPE: Stay-green phenotype during dark-induced
senescence. {ECO:0000269|PubMed:17709752}.
-!- SIMILARITY: Belongs to the staygreen family. {ECO:0000305}.
-!- SEQUENCE CAUTION:
Sequence=EAZ45459.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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EMBL; AY850134; AAW82954.1; -; mRNA.
EMBL; AP005314; BAD46019.1; -; Genomic_DNA.
EMBL; AP005567; BAD46266.1; -; Genomic_DNA.
EMBL; AP008215; BAF25672.1; -; Genomic_DNA.
EMBL; AP014965; BAT09110.1; -; Genomic_DNA.
EMBL; CM000146; EAZ45459.1; ALT_SEQ; Genomic_DNA.
EMBL; AK105810; BAG97378.1; -; mRNA.
RefSeq; XP_015611682.1; XM_015756196.1.
UniGene; Os.11666; -.
BioGrid; 816709; 2.
STRING; 39947.LOC_Os09g36200.1; -.
PaxDb; Q652K1; -.
EnsemblPlants; Os09t0532000-01; Os09t0532000-01; Os09g0532000.
GeneID; 4347672; -.
Gramene; Os09t0532000-01; Os09t0532000-01; Os09g0532000.
KEGG; osa:4347672; -.
eggNOG; ENOG410IETA; Eukaryota.
eggNOG; ENOG4111UAI; LUCA.
InParanoid; Q652K1; -.
KO; K22013; -.
OMA; EECECCF; -.
OrthoDB; EOG09360KNX; -.
Proteomes; UP000059680; Chromosome 9.
ExpressionAtlas; Q652K1; differential.
Genevisible; Q652K1; OS.
GO; GO:0031969; C:chloroplast membrane; IEA:UniProtKB-SubCell.
GO; GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
InterPro; IPR024438; Staygreen.
InterPro; IPR010916; TonB_box_CS.
Pfam; PF12638; Staygreen; 1.
PROSITE; PS00430; TONB_DEPENDENT_REC_1; 1.
1: Evidence at protein level;
Chloroplast; Complete proteome; Membrane; Plastid; Reference proteome;
Transit peptide.
TRANSIT 1 48 Chloroplast. {ECO:0000255}.
CHAIN 49 274 Protein STAY-GREEN, chloroplastic.
/FTId=PRO_0000425236.
COMPBIAS 210 236 Ala-rich.
MUTAGEN 84 84 Y->C: Loss of activity and stay-green
phenotype. {ECO:0000269|PubMed:17714430}.
MUTAGEN 99 99 V->M: No effect on LHCPII binding, but
decreased chlorophyll degradation and
staygreen phenotype.
{ECO:0000269|PubMed:17513504}.
MUTAGEN 194 194 N->NIL: Loss of function.
{ECO:0000269|PubMed:17709752}.
SEQUENCE 274 AA; 30879 MW; 50C9AF72D57C5DC6 CRC64;
MAAATSTMSL LPPITQQQRW HAADSLVVLA SRCHNSRRRR RCRYVVPRAR LFGPAIFEAS
KLKVLFLGVD EEKHQHPGKL PRTYTLTHSD VTARLTLAVS HTINRAQLQG WYNKLQRDEV
VAEWKKVQGH MSLHVHCHIS GGHVLLDLIA GLRYYIFRKE LPVVLKAFVH GDGNLFSRHP
ELEEATVWVY FHSNLPRFNR VECWGPLRDA GAPPEEDDAV AAAAAEEAAA EQMPAAGEWP
RRCPGQCDCC FPPYSLIPWP HQHDVAAADG QPQQ


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