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Protein Tat

 I7FRF9_9HIV1            Unreviewed;       102 AA.
 I7FRF9;
 03-OCT-2012, integrated into UniProtKB/TrEMBL.
 03-OCT-2012, sequence version 1.
 18-JUL-2018, entry version 22.
 RecName: Full=Protein Tat {ECO:0000256|RuleBase:RU003311, ECO:0000256|SAAS:SAAS00396010};
 Name=tat {ECO:0000313|EMBL:AFP25845.1};
 Human immunodeficiency virus 1.
 Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus.
 NCBI_TaxID=11676 {ECO:0000313|EMBL:AFP25845.1};
 NCBI_TaxID=9606; Homo sapiens (Human).
 [1] {ECO:0000313|EMBL:AFP25845.1}
 NUCLEOTIDE SEQUENCE.
 STRAIN=703010256.e10 {ECO:0000313|EMBL:AFP25740.1},
 703010256.e11 {ECO:0000313|EMBL:AFP25748.1},
 703010256.e12 {ECO:0000313|EMBL:AFP25756.1},
 703010256.e13 {ECO:0000313|EMBL:AFP25762.1},
 703010256.e22 {ECO:0000313|EMBL:AFP25825.1},
 703010256.e23 {ECO:0000313|EMBL:AFP25831.1},
 703010256.e25 {ECO:0000313|EMBL:AFP25845.1},
 703010256.e27 {ECO:0000313|EMBL:AFP25859.1}, and
 703010256.e8 {ECO:0000313|EMBL:AFP25887.1};
 PubMed=22693444; DOI=10.1371/journal.ppat.1002686;
 Parrish N.F., Wilen C.B., Banks L.B., Iyer S.S., Pfaff J.M.,
 Salazar-Gonzalez J.F., Salazar M.G., Decker J.M., Parrish E.H.,
 Berg A., Hopper J., Hora B., Kumar A., Mahlokozera T., Yuan S.,
 Coleman C., Vermeulen M., Ding H., Ochsenbauer C., Tilton J.C.,
 Permar S.R., Kappes J.C., Betts M.R., Busch M.P., Gao F.,
 Montefiori D., Haynes B.F., Shaw G.M., Hahn B.H., Doms R.W.;
 "Transmitted/founder and chronic subtype C HIV-1 use CD4 and CCR5
 receptors with equal efficiency and are not inhibited by blocking the
 integrin alpha4beta7.";
 PLoS Pathog. 8:E1002686-E1002686(2012).
 [2] {ECO:0000313|EMBL:AGG96148.1}
 NUCLEOTIDE SEQUENCE.
 STRAIN=C.703010256.w24.172dps.e1 {ECO:0000313|EMBL:AGG96148.1},
 C.703010256.w24.172dps.e12 {ECO:0000313|EMBL:AGG96154.1},
 C.703010256.w24.172dps.e5 {ECO:0000313|EMBL:AGG96182.1},
 C.703010256.w60.426dps.e1 {ECO:0000313|EMBL:AGG96216.1},
 C.703010256.w60.426dps.e12 {ECO:0000313|EMBL:AGG96236.1},
 C.703010256.w60.426dps.e13 {ECO:0000313|EMBL:AGG96243.1},
 C.703010256.w60.426dps.e18 {ECO:0000313|EMBL:AGG96263.1},
 C.703010256.w60.426dps.e2 {ECO:0000313|EMBL:AGG96270.1},
 C.703010256.w60.426dps.e3 {ECO:0000313|EMBL:AGG96276.1},
 C.703010256.w60.426dps.e4 {ECO:0000313|EMBL:AGG96283.1},
 C.703010256.w60.426dps.e8 {ECO:0000313|EMBL:AGG96303.1},
 C.703010256.w60.426dps.e9 {ECO:0000313|EMBL:AGG96310.1},
 C.703010256.w96.684dps.e10 {ECO:0000313|EMBL:AGG96324.1},
 C.703010256.w96.684dps.e11 {ECO:0000313|EMBL:AGG96331.1},
 C.703010256.w96.684dps.e12 {ECO:0000313|EMBL:AGG96338.1},
 C.703010256.w96.684dps.e13 {ECO:0000313|EMBL:AGG96344.1},
 C.703010256.w96.684dps.e22 {ECO:0000313|EMBL:AGG96407.1},
 C.703010256.w96.684dps.e23 {ECO:0000313|EMBL:AGG96413.1},
 C.703010256.w96.684dps.e25 {ECO:0000313|EMBL:AGG96427.1},
 C.703010256.w96.684dps.e27 {ECO:0000313|EMBL:AGG96441.1}, and
 C.703010256.w96.684dps.e8 {ECO:0000313|EMBL:AGG96469.1};
 PubMed=23221345; DOI=10.1172/JCI65330;
 CHAVI Core B;
 Liu M.K., Hawkins N., Ritchie A.J., Ganusov V.V., Whale V.,
 Brackenridge S., Li H., Pavlicek J.W., Cai F., Rose-Abrahams M.,
 Treurnicht F., Hraber P., Riou C., Gray C., Ferrari G., Tanner R.,
 Ping L.H., Anderson J.A., Swanstrom R., B C.C., Cohen M., Karim S.S.,
 Haynes B., Borrow P., Perelson A.S., Shaw G.M., Hahn B.H.,
 Williamson C., Korber B.T., Gao F., Self S., McMichael A.,
 Goonetilleke N.;
 "Vertical T cell immunodominance and epitope entropy determine HIV-1
 escape.";
 J. Clin. Invest. 123:380-393(2013).
 -!- SUBCELLULAR LOCATION: Host nucleus, host nucleolus
     {ECO:0000256|RuleBase:RU003311, ECO:0000256|SAAS:SAAS00581732}.
 -!- SIMILARITY: Belongs to the lentiviruses Tat family.
     {ECO:0000256|RuleBase:RU003311, ECO:0000256|SAAS:SAAS00581731}.
 -----------------------------------------------------------------------
 Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
 Distributed under the Creative Commons Attribution (CC BY 4.0) License
 -----------------------------------------------------------------------
 EMBL; JQ779075; AFP25740.1; -; Genomic_RNA.
 EMBL; JQ779076; AFP25748.1; -; Genomic_RNA.
 EMBL; JQ779077; AFP25756.1; -; Genomic_RNA.
 EMBL; JQ779078; AFP25762.1; -; Genomic_RNA.
 EMBL; JQ779087; AFP25825.1; -; Genomic_RNA.
 EMBL; JQ779088; AFP25831.1; -; Genomic_RNA.
 EMBL; JQ779090; AFP25845.1; -; Genomic_RNA.
 EMBL; JQ779092; AFP25859.1; -; Genomic_RNA.
 EMBL; JQ779096; AFP25887.1; -; Genomic_RNA.
 EMBL; JX972789; AGG96148.1; -; Genomic_RNA.
 EMBL; JX972790; AGG96154.1; -; Genomic_RNA.
 EMBL; JX972794; AGG96182.1; -; Genomic_RNA.
 EMBL; JX972799; AGG96216.1; -; Genomic_RNA.
 EMBL; JX972802; AGG96236.1; -; Genomic_RNA.
 EMBL; JX972803; AGG96243.1; -; Genomic_RNA.
 EMBL; JX972806; AGG96263.1; -; Genomic_RNA.
 EMBL; JX972807; AGG96270.1; -; Genomic_RNA.
 EMBL; JX972808; AGG96276.1; -; Genomic_RNA.
 EMBL; JX972809; AGG96283.1; -; Genomic_RNA.
 EMBL; JX972812; AGG96303.1; -; Genomic_RNA.
 EMBL; JX972813; AGG96310.1; -; Genomic_RNA.
 EMBL; JX972815; AGG96324.1; -; Genomic_RNA.
 EMBL; JX972816; AGG96331.1; -; Genomic_RNA.
 EMBL; JX972817; AGG96338.1; -; Genomic_RNA.
 EMBL; JX972818; AGG96344.1; -; Genomic_RNA.
 EMBL; JX972827; AGG96407.1; -; Genomic_RNA.
 EMBL; JX972828; AGG96413.1; -; Genomic_RNA.
 EMBL; JX972830; AGG96427.1; -; Genomic_RNA.
 EMBL; JX972832; AGG96441.1; -; Genomic_RNA.
 EMBL; JX972836; AGG96469.1; -; Genomic_RNA.
 GO; GO:0005576; C:extracellular region; IEA:UniProtKB-SubCell.
 GO; GO:0030430; C:host cell cytoplasm; IEA:UniProtKB-SubCell.
 GO; GO:0044196; C:host cell nucleolus; IEA:UniProtKB-SubCell.
 GO; GO:0042805; F:actinin binding; IEA:UniProtKB-UniRule.
 GO; GO:0030332; F:cyclin binding; IEA:UniProtKB-UniRule.
 GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-UniRule.
 GO; GO:0019904; F:protein domain specific binding; IEA:UniProtKB-UniRule.
 GO; GO:0001070; F:RNA binding transcription regulator activity; IEA:UniProtKB-UniRule.
 GO; GO:1990970; F:trans-activation response element binding; IEA:UniProtKB-UniRule.
 GO; GO:0039525; P:modulation by virus of host chromatin organization; IEA:UniProtKB-UniRule.
 GO; GO:0039586; P:modulation by virus of host PP1 activity; IEA:UniProtKB-UniRule.
 GO; GO:0010801; P:negative regulation of peptidyl-threonine phosphorylation; IEA:UniProtKB-UniRule.
 GO; GO:0032968; P:positive regulation of transcription elongation from RNA polymerase II promoter; IEA:UniProtKB-UniRule.
 GO; GO:0050434; P:positive regulation of viral transcription; IEA:UniProtKB-UniRule.
 GO; GO:0039502; P:suppression by virus of host type I interferon-mediated signaling pathway; IEA:UniProtKB-UniRule.
 GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
 Gene3D; 4.10.20.10; -; 1.
 HAMAP; MF_04079; HIV_TAT; 1.
 InterPro; IPR001831; IV_Tat.
 InterPro; IPR036963; Tat_dom_sf.
 Pfam; PF00539; Tat; 1.
 PRINTS; PR00055; HIVTATDOMAIN.
 3: Inferred from homology;
 Activator {ECO:0000256|RuleBase:RU003311,
 ECO:0000256|SAAS:SAAS00111091};
 Host nucleus {ECO:0000256|RuleBase:RU003311,
 ECO:0000256|SAAS:SAAS00473431};
 Host-virus interaction {ECO:0000256|SAAS:SAAS00111166};
 RNA-binding {ECO:0000256|RuleBase:RU003311,
 ECO:0000256|SAAS:SAAS00111359};
 Transcription {ECO:0000256|RuleBase:RU003311,
 ECO:0000256|SAAS:SAAS00111074};
 Transcription regulation {ECO:0000256|RuleBase:RU003311,
 ECO:0000256|SAAS:SAAS00111074}.
 SEQUENCE   102 AA;  11646 MW;  2BB4001B777F2251 CRC64;
 MEPIDPKLEP WNHPGSQPKT ACNKCYCKKC SYHCLVCFQT KGLGISYGRK KRRQRRSAPP
 SSEDHQNPLP KQPLSQTRGN PTGSEESKKK VESQTETDPF DW


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