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Protein Tat (Transactivating regulatory protein)

 Q9DH20_9HIV1            Unreviewed;       101 AA.
Q9DH20;
01-MAR-2001, integrated into UniProtKB/TrEMBL.
01-MAR-2001, sequence version 1.
12-SEP-2018, entry version 82.
RecName: Full=Protein Tat {ECO:0000256|RuleBase:RU003311, ECO:0000256|SAAS:SAAS00396010};
Name=tat {ECO:0000313|EMBL:ABI30938.1};
Human immunodeficiency virus 1.
Viruses; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus.
NCBI_TaxID=11676 {ECO:0000313|EMBL:AAG16848.1, ECO:0000313|Proteomes:UP000114284};
NCBI_TaxID=9606; Homo sapiens (Human).
[1] {ECO:0000313|Proteomes:UP000103364, ECO:0000313|Proteomes:UP000114284, ECO:0000313|Proteomes:UP000121350}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=11000225; DOI=10.1128/JVI.74.20.9546-9552.2000;
Yuste E., Lopez-Galindez C., Domingo E.;
"Unusual distribution of mutations associated with serial bottleneck
passages of human immunodeficiency virus type 1.";
J. Virol. 74:9546-9552(2000).
[2] {ECO:0000313|EMBL:ABI30938.1, ECO:0000313|Proteomes:UP000110452}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=H61 {ECO:0000313|EMBL:ABI30938.1};
PubMed=17331031; DOI=10.1089/aid.2006.0163;
Sanchez-Merino V., Munoz L., Perez-Pastrana M.E., Herrera M.I.,
Olivares I., Lopez-Galindez C.;
"Genetic changes associated with distinct patterns of HIV type 1
persistence in chronically infected cell lines.";
AIDS Res. Hum. Retroviruses 23:251-260(2007).
[3] {ECO:0000313|Proteomes:UP000103264, ECO:0000313|Proteomes:UP000114305, ECO:0000313|Proteomes:UP000117372}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=D1.5p11 {ECO:0000313|EMBL:ADK12746.1},
D1p1 {ECO:0000313|EMBL:ADK12730.1},
D1p11 {ECO:0000313|EMBL:ADK12738.1},
D2p1 {ECO:0000313|EMBL:ADK12754.1},
D2p11 {ECO:0000313|EMBL:ADK12762.1},
E1.5p1 {ECO:0000313|EMBL:ADK12883.1},
E1.5p11 {ECO:0000313|EMBL:ADK12892.1},
G1p1 {ECO:0000313|EMBL:ADK12770.1},
G1p11 {ECO:0000313|EMBL:ADK12779.1},
G2p1 {ECO:0000313|EMBL:ADK12797.1},
G2p11 {ECO:0000313|EMBL:ADK12806.1},
H1.5p1 {ECO:0000313|EMBL:ADK12901.1},
H1.5p11 {ECO:0000313|EMBL:ADK12909.1},
I1p1 {ECO:0000313|EMBL:ADK12815.1}, and
I1p11 {ECO:0000313|EMBL:ADK12824.1};
Lopez-Galindez C., Lorenzo-Redondo R., Borderia A.V., Pernas M.,
Casado C., Alvaro T., Domingo E.;
"Initial fitness recovery of HIV-1 is driven by quasispecies
heterogeneity and can occur without mutations in the consensus
sequence.";
Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases.
[4] {ECO:0000313|Proteomes:UP000126539, ECO:0000313|Proteomes:UP000130972, ECO:0000313|Proteomes:UP000147120}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=D1.5p21 {ECO:0000313|EMBL:ADV58171.1},
E1.5p21 {ECO:0000313|EMBL:ADV58180.1},
G1.5p21 {ECO:0000313|EMBL:ADV58207.1},
G2p21 {ECO:0000313|EMBL:ADV58198.1}, and
H1.5p21 {ECO:0000313|EMBL:ADV58215.1};
PubMed=21106747; DOI=10.1128/JVI.01254-10;
Lorenzo-Redondo R., Borderia A.V., Lopez-Galindez C.;
"Dynamics of in vitro fitness recovery of HIV-1.";
J. Virol. 85:1861-1870(2011).
[5] {ECO:0000313|Proteomes:UP000100912, ECO:0000313|Proteomes:UP000117458, ECO:0000313|Proteomes:UP000118840}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=D15p31 {ECO:0000313|EMBL:ALE27576.1},
D2p31 {ECO:0000313|EMBL:ALE27568.1},
E1p31 {ECO:0000313|EMBL:ALE27583.1},
G15p31 {ECO:0000313|EMBL:ALE27608.1},
G1p31 {ECO:0000313|EMBL:ALE27591.1},
H1p31 {ECO:0000313|EMBL:ALE27617.1}, and
I1p31 {ECO:0000313|EMBL:ALE27625.1};
PubMed=26358613; DOI=10.1016/j.ympev.2015.09.001;
Arenas M., Lorenzo-Redondo R., Lopez-Galindez C.;
"Influence of mutation and recombination on HIV-1 in vitro fitness
recovery.";
Mol. Phylogenet. Evol. 94:264-270(2016).
-!- SUBCELLULAR LOCATION: Host nucleus, host nucleolus
{ECO:0000256|RuleBase:RU003311, ECO:0000256|SAAS:SAAS00581732}.
-!- SIMILARITY: Belongs to the lentiviruses Tat family.
{ECO:0000256|RuleBase:RU003311, ECO:0000256|SAAS:SAAS00581731}.
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EMBL; AF256204; AAG16788.1; -; Genomic_DNA.
EMBL; AF256205; AAG16797.1; -; Genomic_DNA.
EMBL; AF256206; AAG16805.1; -; Genomic_DNA.
EMBL; AF256207; AAG16814.1; -; Genomic_DNA.
EMBL; AF256208; AAG16822.1; -; Genomic_DNA.
EMBL; AF256211; AAG16848.1; -; Genomic_DNA.
EMBL; DQ854715; ABI30938.1; -; Genomic_DNA.
EMBL; GQ386774; ADK12730.1; -; Genomic_DNA.
EMBL; GQ386775; ADK12738.1; -; Genomic_DNA.
EMBL; GQ386776; ADK12746.1; -; Genomic_DNA.
EMBL; GQ386777; ADK12754.1; -; Genomic_DNA.
EMBL; GQ386778; ADK12762.1; -; Genomic_DNA.
EMBL; GQ386779; ADK12770.1; -; Genomic_DNA.
EMBL; GQ386780; ADK12779.1; -; Genomic_DNA.
EMBL; GQ386782; ADK12797.1; -; Genomic_DNA.
EMBL; GQ386783; ADK12806.1; -; Genomic_DNA.
EMBL; GQ386784; ADK12815.1; -; Genomic_DNA.
EMBL; GQ386785; ADK12824.1; -; Genomic_DNA.
EMBL; GQ386792; ADK12883.1; -; Genomic_DNA.
EMBL; GQ386793; ADK12892.1; -; Genomic_DNA.
EMBL; GQ386794; ADK12901.1; -; Genomic_DNA.
EMBL; GQ386795; ADK12909.1; -; Genomic_DNA.
EMBL; HM469974; ADV58171.1; -; Genomic_DNA.
EMBL; HM469975; ADV58180.1; -; Genomic_DNA.
EMBL; HM469977; ADV58198.1; -; Genomic_DNA.
EMBL; HM469978; ADV58207.1; -; Genomic_DNA.
EMBL; HM469979; ADV58215.1; -; Genomic_DNA.
EMBL; KT259309; ALE27568.1; -; Genomic_DNA.
EMBL; KT259310; ALE27576.1; -; Genomic_DNA.
EMBL; KT259311; ALE27583.1; -; Genomic_DNA.
EMBL; KT259312; ALE27591.1; -; Genomic_DNA.
EMBL; KT259314; ALE27608.1; -; Genomic_DNA.
EMBL; KT259315; ALE27617.1; -; Genomic_DNA.
EMBL; KT259316; ALE27625.1; -; Genomic_DNA.
Proteomes; UP000100912; Genome.
Proteomes; UP000103264; Genome.
Proteomes; UP000103364; Genome.
Proteomes; UP000110452; Genome.
Proteomes; UP000114284; Genome.
Proteomes; UP000114305; Genome.
Proteomes; UP000117372; Genome.
Proteomes; UP000117458; Genome.
Proteomes; UP000118840; Genome.
Proteomes; UP000121350; Genome.
Proteomes; UP000126173; Genome.
Proteomes; UP000126539; Genome.
Proteomes; UP000129423; Genome.
Proteomes; UP000129529; Genome.
Proteomes; UP000130469; Genome.
Proteomes; UP000130827; Genome.
Proteomes; UP000130972; Genome.
Proteomes; UP000131300; Genome.
Proteomes; UP000136408; Genome.
Proteomes; UP000138062; Genome.
Proteomes; UP000138780; Genome.
Proteomes; UP000138947; Genome.
Proteomes; UP000139881; Genome.
Proteomes; UP000144917; Genome.
Proteomes; UP000145631; Genome.
Proteomes; UP000147120; Genome.
Proteomes; UP000148305; Genome.
Proteomes; UP000148505; Genome.
Proteomes; UP000149930; Genome.
Proteomes; UP000154061; Genome.
Proteomes; UP000167050; Genome.
Proteomes; UP000167475; Genome.
Proteomes; UP000167725; Genome.
Proteomes; UP000174545; Genome.
GO; GO:0044196; C:host cell nucleolus; IEA:UniProtKB-SubCell.
GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
GO; GO:0001070; F:RNA-binding transcription regulator activity; IEA:InterPro.
GO; GO:0050434; P:positive regulation of viral transcription; IEA:InterPro.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-KW.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
GO; GO:0016032; P:viral process; IEA:UniProtKB-KW.
Gene3D; 4.10.20.10; -; 1.
HAMAP; MF_04079; HIV_TAT; 1.
InterPro; IPR001831; IV_Tat.
InterPro; IPR036963; Tat_dom_sf.
Pfam; PF00539; Tat; 1.
PRINTS; PR00055; HIVTATDOMAIN.
3: Inferred from homology;
Activator {ECO:0000256|RuleBase:RU003311,
ECO:0000256|SAAS:SAAS00111091};
Complete proteome {ECO:0000313|Proteomes:UP000100912,
ECO:0000313|Proteomes:UP000103264, ECO:0000313|Proteomes:UP000103364,
ECO:0000313|Proteomes:UP000110452};
Host nucleus {ECO:0000256|RuleBase:RU003311,
ECO:0000256|SAAS:SAAS00473431};
Host-virus interaction {ECO:0000256|SAAS:SAAS00111166};
RNA-binding {ECO:0000256|RuleBase:RU003311,
ECO:0000256|SAAS:SAAS00111359};
Transcription {ECO:0000256|RuleBase:RU003311,
ECO:0000256|SAAS:SAAS00111074};
Transcription regulation {ECO:0000256|RuleBase:RU003311,
ECO:0000256|SAAS:SAAS00111074}.
SEQUENCE 101 AA; 11453 MW; 831E576C7E82C649 CRC64;
MEPVDPRLEP WKHPGSQPRT ACTNCYCKKC CFHCQVCFIT KGLGISYGRK KRRQRRRAPQ
DSQTHQVSLS KQPASQPGGD PTGPKESKKK VERETETDPV N


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