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Protein YIPF5 (Five-pass transmembrane protein localizing in the Golgi apparatus and the endoplasmic reticulum 5) (Smooth muscle cell-associated protein 5) (SMAP-5) (YIP1 family member 5) (YPT-interacting protein 1 A)

 YIPF5_HUMAN             Reviewed;         257 AA.
Q969M3; D3DQF5; Q4VSN6; Q53EX4; Q8NHE5; Q9H338; Q9H3U4;
16-MAY-2006, integrated into UniProtKB/Swiss-Prot.
01-DEC-2001, sequence version 1.
20-JUN-2018, entry version 128.
RecName: Full=Protein YIPF5;
AltName: Full=Five-pass transmembrane protein localizing in the Golgi apparatus and the endoplasmic reticulum 5;
AltName: Full=Smooth muscle cell-associated protein 5;
Short=SMAP-5;
AltName: Full=YIP1 family member 5;
AltName: Full=YPT-interacting protein 1 A;
Name=YIPF5; Synonyms=FINGER5, YIP1A;
ORFNames=PP12723, SB140, UNQ3123/PRO10275;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, INTERACTION WITH
SEC23 AND SEC24, AND SUBCELLULAR LOCATION.
PubMed=11489904; DOI=10.1074/jbc.M106189200;
Tang B.L., Ong Y.S., Huang B., Wei S., Wong E.T., Qi R., Horstmann H.,
Hong W.;
"A membrane protein enriched in endoplasmic reticulum exit sites
interacts with COPII.";
J. Biol. Chem. 276:40008-40017(2001).
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2 AND 3), TISSUE SPECIFICITY,
AND INDUCTION.
TISSUE=Coronary artery;
PubMed=15922870; DOI=10.1016/j.gene.2005.03.012;
Stolle K., Schnoor M., Fuellen G., Spitzer M., Engel T., Spener F.,
Cullen P., Lorkowski S.;
"Cloning, cellular localization, genomic organization, and tissue-
specific expression of the TGFbeta1-inducible SMAP-5 gene.";
Gene 351:119-130(2005).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
Zhang W., Li N., Zhang M., Wan T., Cao X.;
Submitted (MAY-2001) to the EMBL/GenBank/DDBJ databases.
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
PubMed=12975309; DOI=10.1101/gr.1293003;
Clark H.F., Gurney A.L., Abaya E., Baker K., Baldwin D.T., Brush J.,
Chen J., Chow B., Chui C., Crowley C., Currell B., Deuel B., Dowd P.,
Eaton D., Foster J.S., Grimaldi C., Gu Q., Hass P.E., Heldens S.,
Huang A., Kim H.S., Klimowski L., Jin Y., Johnson S., Lee J.,
Lewis L., Liao D., Mark M.R., Robbie E., Sanchez C., Schoenfeld J.,
Seshagiri S., Simmons L., Singh J., Smith V., Stinson J., Vagts A.,
Vandlen R.L., Watanabe C., Wieand D., Woods K., Xie M.-H.,
Yansura D.G., Yi S., Yu G., Yuan J., Zhang M., Zhang Z., Goddard A.D.,
Wood W.I., Godowski P.J., Gray A.M.;
"The secreted protein discovery initiative (SPDI), a large-scale
effort to identify novel human secreted and transmembrane proteins: a
bioinformatics assessment.";
Genome Res. 13:2265-2270(2003).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
TISSUE=Neuroblastoma;
PubMed=14702039; DOI=10.1038/ng1285;
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human
cDNAs.";
Nat. Genet. 36:40-45(2004).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
PubMed=15498874; DOI=10.1073/pnas.0404089101;
Wan D., Gong Y., Qin W., Zhang P., Li J., Wei L., Zhou X., Li H.,
Qiu X., Zhong F., He L., Yu J., Yao G., Jiang H., Qian L., Yu Y.,
Shu H., Chen X., Xu H., Guo M., Pan Z., Chen Y., Ge C., Yang S.,
Gu J.;
"Large-scale cDNA transfection screening for genes related to cancer
development and progression.";
Proc. Natl. Acad. Sci. U.S.A. 101:15724-15729(2004).
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
TISSUE=Kidney epithelium;
Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S.;
Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases.
[8]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
TISSUE=Adipose tissue;
PubMed=17974005; DOI=10.1186/1471-2164-8-399;
Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U.,
Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H.,
Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K.,
Ottenwaelder B., Poustka A., Wiemann S., Schupp I.;
"The full-ORF clone resource of the German cDNA consortium.";
BMC Genomics 8:399-399(2007).
[9]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
Venter J.C.;
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
[10]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
TISSUE=Cervix, Eye, and Uterus;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[11]
NUCLEOTIDE SEQUENCE [MRNA] OF 181-257 (ISOFORMS 1/2).
TISSUE=Heart;
Nishimoto S., Toyoda H., Tawara J., Aoki T., Komurasaki T.;
"Molecular cloning and characterization of the human smooth muscle
cell associated protein-5 (SMAP-5).";
Submitted (MAY-1998) to the EMBL/GenBank/DDBJ databases.
[12]
FUNCTION, AND INTERACTION WITH RAB1A.
PubMed=15611160; DOI=10.1534/genetics.104.032888;
Chen C.Z., Calero M., DeRegis C.J., Heidtman M., Barlowe C.,
Collins R.N.;
"Genetic analysis of yeast Yip1p function reveals a requirement for
Golgi-localized rab proteins and rab-Guanine nucleotide dissociation
inhibitor.";
Genetics 168:1827-1841(2004).
[13]
INTERACTION WITH YIF1A, AND SUBCELLULAR LOCATION.
PubMed=15990086; DOI=10.1016/j.bbrc.2005.06.051;
Jin C., Zhang Y., Zhu H., Ahmed K., Fu C., Yao X.;
"Human Yip1A specifies the localization of Yif1 to the Golgi
apparatus.";
Biochem. Biophys. Res. Commun. 334:16-22(2005).
[14]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=15592455; DOI=10.1038/nbt1046;
Rush J., Moritz A., Lee K.A., Guo A., Goss V.L., Spek E.J., Zhang H.,
Zha X.-M., Polakiewicz R.D., Comb M.J.;
"Immunoaffinity profiling of tyrosine phosphorylation in cancer
cells.";
Nat. Biotechnol. 23:94-101(2005).
[15]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Erythroleukemia;
PubMed=23186163; DOI=10.1021/pr300630k;
Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J.,
Mohammed S.;
"Toward a comprehensive characterization of a human cancer cell
phosphoproteome.";
J. Proteome Res. 12:260-271(2013).
[16]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Liver;
PubMed=24275569; DOI=10.1016/j.jprot.2013.11.014;
Bian Y., Song C., Cheng K., Dong M., Wang F., Huang J., Sun D.,
Wang L., Ye M., Zou H.;
"An enzyme assisted RP-RPLC approach for in-depth analysis of human
liver phosphoproteome.";
J. Proteomics 96:253-262(2014).
[17]
SUBCELLULAR LOCATION, TOPOLOGY, AND INTERACTION WITH YIPF3 AND YIPF4.
PubMed=27999994; DOI=10.1007/s00418-016-1527-3;
Kranjc T., Dempsey E., Cagney G., Nakamura N., Shields D.C.,
Simpson J.C.;
"Functional characterisation of the YIPF protein family in mammalian
cells.";
Histochem. Cell Biol. 147:439-451(2017).
-!- FUNCTION: Plays a role in transport between endoplasmic reticulum
and Golgi. {ECO:0000269|PubMed:11489904,
ECO:0000269|PubMed:15611160}.
-!- SUBUNIT: Interacts with the COPII coat components Sec23 (SEC23A
and/or SEC23B) and Sec24 (SEC24A and/or SEC24B) (PubMed:11489904).
Interacts with YIF1A (PubMed:15990086). May interact with RAB1A
(PubMed:15611160). Interacts with YIPF3 and YIPF4
(PubMed:27999994). {ECO:0000269|PubMed:11489904,
ECO:0000269|PubMed:15611160, ECO:0000269|PubMed:15990086,
ECO:0000269|PubMed:27999994}.
-!- INTERACTION:
O75460:ERN1; NbExp=3; IntAct=EBI-2124787, EBI-371750;
O95070:YIF1A; NbExp=6; IntAct=EBI-2124787, EBI-2799703;
-!- SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
{ECO:0000250|UniProtKB:Q9EQQ2}; Multi-pass membrane protein. Golgi
apparatus, cis-Golgi network membrane
{ECO:0000269|PubMed:27999994}; Multi-pass membrane protein.
Cytoplasmic vesicle, COPII-coated vesicle
{ECO:0000250|UniProtKB:Q5XID0}. Note=Enriched at the endoplasmic
reticulum exit sites. Colocalizes with RAB1A. Incorporated into
COPII-coated vesicles.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=3;
Name=1;
IsoId=Q969M3-1; Sequence=Displayed;
Name=2; Synonyms=D;
IsoId=Q969M3-2; Sequence=VSP_018253;
Name=3; Synonyms=I;
IsoId=Q969M3-3; Sequence=VSP_018254;
-!- TISSUE SPECIFICITY: Ubiquitously expressed. Highly expressed in
coronary smooth muscles. {ECO:0000269|PubMed:15922870}.
-!- INDUCTION: By TGFB1. {ECO:0000269|PubMed:15922870}.
-!- SIMILARITY: Belongs to the YIP1 family. {ECO:0000305}.
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EMBL; AF140225; AAG48521.1; -; mRNA.
EMBL; AY640925; AAV51256.1; -; mRNA.
EMBL; AY640926; AAV51257.1; -; mRNA.
EMBL; AY640927; AAV51258.1; -; mRNA.
EMBL; AY640928; AAV51259.1; -; mRNA.
EMBL; AY640929; -; NOT_ANNOTATED_CDS; mRNA.
EMBL; AY640934; AAV51260.1; -; mRNA.
EMBL; AY037152; AAK67644.1; -; mRNA.
EMBL; AY358863; AAQ89222.1; -; mRNA.
EMBL; AK054576; BAB70763.1; -; mRNA.
EMBL; AF318329; AAL55836.1; -; mRNA.
EMBL; AK223515; BAD97235.1; -; mRNA.
EMBL; CR749463; CAH18295.1; -; mRNA.
EMBL; CH471062; EAW61864.1; -; Genomic_DNA.
EMBL; CH471062; EAW61865.1; -; Genomic_DNA.
EMBL; BC007829; AAH07829.1; -; mRNA.
EMBL; BC014253; AAH14253.1; -; mRNA.
EMBL; BC024737; AAH24737.1; -; mRNA.
EMBL; AB014733; BAB20270.1; -; mRNA.
CCDS; CCDS4279.1; -. [Q969M3-1]
CCDS; CCDS64277.1; -. [Q969M3-2]
RefSeq; NP_001020118.1; NM_001024947.3. [Q969M3-1]
RefSeq; NP_001258661.1; NM_001271732.1. [Q969M3-2]
RefSeq; NP_110426.4; NM_030799.8. [Q969M3-1]
UniGene; Hs.372050; -.
ProteinModelPortal; Q969M3; -.
BioGrid; 123519; 53.
IntAct; Q969M3; 57.
MINT; Q969M3; -.
STRING; 9606.ENSP00000274496; -.
iPTMnet; Q969M3; -.
PhosphoSitePlus; Q969M3; -.
SwissPalm; Q969M3; -.
DMDM; 74760683; -.
EPD; Q969M3; -.
MaxQB; Q969M3; -.
PaxDb; Q969M3; -.
PeptideAtlas; Q969M3; -.
PRIDE; Q969M3; -.
ProteomicsDB; 75792; -.
ProteomicsDB; 75793; -. [Q969M3-2]
ProteomicsDB; 75794; -. [Q969M3-3]
DNASU; 81555; -.
Ensembl; ENST00000274496; ENSP00000274496; ENSG00000145817. [Q969M3-1]
Ensembl; ENST00000448443; ENSP00000397704; ENSG00000145817. [Q969M3-1]
Ensembl; ENST00000513112; ENSP00000425422; ENSG00000145817. [Q969M3-2]
GeneID; 81555; -.
KEGG; hsa:81555; -.
UCSC; uc003lnk.6; human. [Q969M3-1]
CTD; 81555; -.
DisGeNET; 81555; -.
EuPathDB; HostDB:ENSG00000145817.16; -.
GeneCards; YIPF5; -.
H-InvDB; HIX0005274; -.
HGNC; HGNC:24877; YIPF5.
HPA; HPA042338; -.
HPA; HPA073622; -.
MIM; 611483; gene.
neXtProt; NX_Q969M3; -.
OpenTargets; ENSG00000145817; -.
PharmGKB; PA142670548; -.
eggNOG; KOG3103; Eukaryota.
eggNOG; COG5080; LUCA.
GeneTree; ENSGT00510000046817; -.
HOVERGEN; HBG055241; -.
InParanoid; Q969M3; -.
KO; K20363; -.
OMA; FDNLNTD; -.
OrthoDB; EOG091G0Y2Z; -.
PhylomeDB; Q969M3; -.
TreeFam; TF313100; -.
ChiTaRS; YIPF5; human.
GeneWiki; YIPF5; -.
GenomeRNAi; 81555; -.
PRO; PR:Q969M3; -.
Proteomes; UP000005640; Chromosome 5.
Bgee; ENSG00000145817; -.
CleanEx; HS_YIPF5; -.
ExpressionAtlas; Q969M3; baseline and differential.
Genevisible; Q969M3; HS.
GO; GO:0030134; C:COPII-coated ER to Golgi transport vesicle; IEA:UniProtKB-SubCell.
GO; GO:0005783; C:endoplasmic reticulum; IDA:HPA.
GO; GO:0070971; C:endoplasmic reticulum exit site; IEA:Ensembl.
GO; GO:0005789; C:endoplasmic reticulum membrane; IEA:UniProtKB-SubCell.
GO; GO:0005794; C:Golgi apparatus; IDA:HPA.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0043231; C:intracellular membrane-bounded organelle; IDA:HPA.
GO; GO:0005654; C:nucleoplasm; IDA:HPA.
GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
GO; GO:0060628; P:regulation of ER to Golgi vesicle-mediated transport; IEA:Ensembl.
GO; GO:0016192; P:vesicle-mediated transport; IEA:UniProtKB-KW.
InterPro; IPR006977; Yip1.
Pfam; PF04893; Yip1; 1.
1: Evidence at protein level;
Alternative splicing; Complete proteome; Cytoplasmic vesicle;
Endoplasmic reticulum; ER-Golgi transport; Golgi apparatus; Membrane;
Protein transport; Reference proteome; Transmembrane;
Transmembrane helix; Transport.
CHAIN 1 257 Protein YIPF5.
/FTId=PRO_0000234328.
TOPO_DOM 1 124 Cytoplasmic.
{ECO:0000305|PubMed:27999994}.
TRANSMEM 125 145 Helical. {ECO:0000255}.
TOPO_DOM 146 146 Lumenal. {ECO:0000305}.
TRANSMEM 147 167 Helical. {ECO:0000255}.
TOPO_DOM 168 173 Cytoplasmic. {ECO:0000305}.
TRANSMEM 174 194 Helical. {ECO:0000255}.
TOPO_DOM 195 196 Lumenal. {ECO:0000305}.
TRANSMEM 197 217 Helical. {ECO:0000255}.
TOPO_DOM 218 236 Cytoplasmic. {ECO:0000305}.
TRANSMEM 237 257 Helical. {ECO:0000255}.
REGION 75 106 Interaction with Sec23.
VAR_SEQ 1 54 Missing (in isoform 2).
{ECO:0000303|PubMed:15922870}.
/FTId=VSP_018253.
VAR_SEQ 242 257 YPCALLYGVFALISVF -> LQPNITYGSNYFLFCCLPYPQ
QHF (in isoform 3).
{ECO:0000303|PubMed:15922870}.
/FTId=VSP_018254.
CONFLICT 136 138 AFG -> DLA (in Ref. 3; AAK67644).
{ECO:0000305}.
CONFLICT 155 155 I -> S (in Ref. 1; AAG48521).
{ECO:0000305}.
CONFLICT 187 187 C -> W (in Ref. 3; AAK67644).
{ECO:0000305}.
CONFLICT 192 192 I -> Y (in Ref. 1; AAG48521).
{ECO:0000305}.
CONFLICT 244 244 C -> R (in Ref. 7; BAD97235).
{ECO:0000305}.
SEQUENCE 257 AA; 27989 MW; B30EACB0E514DC67 CRC64;
MSGFENLNTD FYQTSYSIDD QSQQSYDYGG SGGPYSKQYA GYDYSQQGRF VPPDMMQPQQ
PYTGQIYQPT QAYTPASPQP FYGNNFEDEP PLLEELGINF DHIWQKTLTV LHPLKVADGS
IMNETDLAGP MVFCLAFGAT LLLAGKIQFG YVYGISAIGC LGMFCLLNLM SMTGVSFGCV
ASVLGYCLLP MILLSSFAVI FSLQGMVGII LTAGIIGWCS FSASKIFISA LAMEGQQLLV
AYPCALLYGV FALISVF


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