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Protein glass

 GLAS_DROME              Reviewed;         604 AA.
P13360; Q95T58; Q9VE83; Q9VE84;
01-JAN-1990, integrated into UniProtKB/Swiss-Prot.
02-FEB-2004, sequence version 2.
20-JUN-2018, entry version 168.
RecName: Full=Protein glass;
Name=gl; ORFNames=CG7672;
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM A).
PubMed=2770860; DOI=10.1038/340531a0;
Moses K., Ellis M.C., Rubin G.M.;
"The glass gene encodes a zinc-finger protein required by Drosophila
photoreceptor cells.";
Nature 340:531-536(1989).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley;
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G.,
Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A.,
Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X.,
Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[3]
GENOME REANNOTATION, AND ALTERNATIVE SPLICING.
STRAIN=Berkeley;
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D.N.J., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM B).
STRAIN=Berkeley; TISSUE=Head;
PubMed=12537569; DOI=10.1186/gb-2002-3-12-research0080;
Stapleton M., Carlson J.W., Brokstein P., Yu C., Champe M.,
George R.A., Guarin H., Kronmiller B., Pacleb J.M., Park S., Wan K.H.,
Rubin G.M., Celniker S.E.;
"A Drosophila full-length cDNA resource.";
Genome Biol. 3:RESEARCH0080.1-RESEARCH0080.8(2002).
[5]
FUNCTION, AND DNA-BINDING ACTIVITY.
PubMed=7604032; DOI=10.1073/pnas.92.14.6557;
O'Neill E.M., Ellis M.C., Rubin G.M., Tjian R.;
"Functional domain analysis of glass, a zinc-finger-containing
transcription factor in Drosophila.";
Proc. Natl. Acad. Sci. U.S.A. 92:6557-6561(1995).
-!- FUNCTION: Transcription factor required for gene expression
specific to photoreceptor cells. {ECO:0000269|PubMed:7604032}.
-!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=A;
IsoId=P13360-1; Sequence=Displayed;
Name=B;
IsoId=P13360-2; Sequence=VSP_009352;
Note=No experimental confirmation available.;
-----------------------------------------------------------------------
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Distributed under the Creative Commons Attribution-NoDerivs License
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EMBL; X15400; CAA33450.1; -; Genomic_DNA.
EMBL; AE014297; AAF55543.1; -; Genomic_DNA.
EMBL; AE014297; AAF55544.2; -; Genomic_DNA.
EMBL; AY060322; AAL25361.1; -; mRNA.
PIR; S05447; S05447.
RefSeq; NP_476854.1; NM_057506.3. [P13360-1]
RefSeq; NP_732330.1; NM_169807.4. [P13360-2]
UniGene; Dm.7107; -.
ProteinModelPortal; P13360; -.
SMR; P13360; -.
BioGrid; 67226; 18.
STRING; 7227.FBpp0303075; -.
PaxDb; P13360; -.
PRIDE; P13360; -.
EnsemblMetazoa; FBtr0083584; FBpp0083005; FBgn0004618. [P13360-1]
EnsemblMetazoa; FBtr0083585; FBpp0083006; FBgn0004618. [P13360-2]
GeneID; 42210; -.
KEGG; dme:Dmel_CG7672; -.
CTD; 42210; -.
FlyBase; FBgn0004618; gl.
eggNOG; KOG1721; Eukaryota.
eggNOG; COG5048; LUCA.
GeneTree; ENSGT00910000144031; -.
InParanoid; P13360; -.
KO; K09214; -.
OMA; THYPASA; -.
OrthoDB; EOG091G0PP0; -.
PhylomeDB; P13360; -.
GenomeRNAi; 42210; -.
PRO; PR:P13360; -.
Proteomes; UP000000803; Chromosome 3R.
Bgee; FBgn0004618; -.
ExpressionAtlas; P13360; baseline and differential.
Genevisible; P13360; DM.
GO; GO:0005634; C:nucleus; IDA:UniProtKB.
GO; GO:0003677; F:DNA binding; IMP:UniProtKB.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0003705; F:transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding; IDA:FlyBase.
GO; GO:0060086; P:circadian temperature homeostasis; IMP:FlyBase.
GO; GO:0001745; P:compound eye morphogenesis; IMP:FlyBase.
GO; GO:0001751; P:compound eye photoreceptor cell differentiation; IMP:FlyBase.
GO; GO:0001752; P:compound eye photoreceptor fate commitment; IMP:FlyBase.
GO; GO:0009649; P:entrainment of circadian clock; IMP:FlyBase.
GO; GO:0043153; P:entrainment of circadian clock by photoperiod; IMP:FlyBase.
GO; GO:0046530; P:photoreceptor cell differentiation; IMP:FlyBase.
GO; GO:0045944; P:positive regulation of transcription by RNA polymerase II; IMP:FlyBase.
GO; GO:0006355; P:regulation of transcription, DNA-templated; IMP:UniProtKB.
GO; GO:0010114; P:response to red light; IMP:FlyBase.
GO; GO:0035271; P:ring gland development; IMP:FlyBase.
GO; GO:0007605; P:sensory perception of sound; IMP:FlyBase.
GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-KW.
GO; GO:0007601; P:visual perception; IEA:UniProtKB-KW.
InterPro; IPR036236; Znf_C2H2_sf.
InterPro; IPR013087; Znf_C2H2_type.
SMART; SM00355; ZnF_C2H2; 5.
SUPFAM; SSF57667; SSF57667; 3.
PROSITE; PS00028; ZINC_FINGER_C2H2_1; 5.
PROSITE; PS50157; ZINC_FINGER_C2H2_2; 5.
1: Evidence at protein level;
Alternative splicing; Complete proteome; DNA-binding; Metal-binding;
Nucleus; Reference proteome; Repeat; Sensory transduction;
Transcription; Transcription regulation; Vision; Zinc; Zinc-finger.
CHAIN 1 604 Protein glass.
/FTId=PRO_0000046939.
ZN_FING 437 459 C2H2-type 1. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 465 487 C2H2-type 2. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 493 515 C2H2-type 3. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 521 543 C2H2-type 4. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
ZN_FING 549 571 C2H2-type 5. {ECO:0000255|PROSITE-
ProRule:PRU00042}.
VAR_SEQ 558 604 Missing (in isoform B).
{ECO:0000303|PubMed:12537569}.
/FTId=VSP_009352.
CONFLICT 60 60 Q -> E (in Ref. 1; CAA33450).
{ECO:0000305}.
CONFLICT 361 361 P -> S (in Ref. 1; cDNA). {ECO:0000305}.
CONFLICT 362 362 L -> M (in Ref. 1; CAA33450).
{ECO:0000305}.
CONFLICT 377 377 S -> T (in Ref. 1; cDNA). {ECO:0000305}.
SEQUENCE 604 AA; 62510 MW; D73C037D56D707AA CRC64;
MGLLYKGSKL LNTILDSLED QEGGAMYISC DVSNGGPVEP ETGYVPNNPL FGLALDSPQQ
ECAASCVGCL SCQGSTALPI SSLTSSDFDC GGCFDPTIGV GVGIGGGHIQ ISTTPPASSG
NGSSNNGAGG GSSGNHGYWS TDEMASTFPG LPPLDIDPLP SLFPFSPCGA SYNFAAGNPH
QAASLSYTVH PHQMLISPNS HNHGQMHSQH QQHQHQQSQV QASHVGNSLL QSSGGNNIGS
NGSAGGVANA ASCYYETSAG TAAPPPPPAA AMYPSMSVNV SMNMTMHHGY GAGDAGGVPM
QCSQMNWTPP SNSTSAAAAA AAVNVLYPPL LSPGHYPASA TYSFTADFRA PAPTGLGALP
PLTVGEKESP SPPANSSLAG YYPTGVGNQG YTPPHKSPTS YQAAALGLSL SAFEDEEDSN
EDLDGDEGSS GGEMKPNLCR LCGKTYARPS TLKTHLRTHS GERPYRCPDC NKSFSQAANL
TAHVRTHTGQ KPFRCPICDR RFSQSSSVTT HMRTHSGERP YRCSSCKKSF SDSSTLTKHL
RIHSGEKPYQ CKLCLLRFSQ SGNLNRHMRV HGNNNSSNGS NGATGVGGES STGSGVGGGN
SLLT


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