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Protein real-time

 RETM_DROME              Reviewed;         659 AA.
Q9VMD6; Q95U56;
26-APR-2005, integrated into UniProtKB/Swiss-Prot.
01-MAR-2001, sequence version 2.
12-SEP-2018, entry version 119.
RecName: Full=Protein real-time;
Name=retm; ORFNames=CG9528;
Drosophila melanogaster (Fruit fly).
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha;
Ephydroidea; Drosophilidae; Drosophila; Sophophora.
NCBI_TaxID=7227;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Berkeley;
PubMed=10731132; DOI=10.1126/science.287.5461.2185;
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D.,
Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F.,
George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N.,
Sutton G.G., Wortman J.R., Yandell M.D., Zhang Q., Chen L.X.,
Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D.,
Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G.,
Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D.,
Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M.,
Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S.,
Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P.,
Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I.,
Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P.,
de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M.,
Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P.,
Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W.,
Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K.,
Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M.,
Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J.,
Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C.,
Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A.,
Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z.,
Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X.,
Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D.,
Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A.,
Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L.,
Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M.,
Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G.,
Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H.,
Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J.,
Spier E., Spradling A.C., Stapleton M., Strong R., Sun E.,
Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X.,
Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J.,
Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A.,
Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L.,
Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X.,
Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.;
"The genome sequence of Drosophila melanogaster.";
Science 287:2185-2195(2000).
[2]
GENOME REANNOTATION.
STRAIN=Berkeley;
PubMed=12537572; DOI=10.1186/gb-2002-3-12-research0083;
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S.,
Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E.,
Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P.,
Bettencourt B.R., Celniker S.E., de Grey A.D.N.J., Drysdale R.A.,
Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q.,
Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M.,
Lewis S.E.;
"Annotation of the Drosophila melanogaster euchromatic genome: a
systematic review.";
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND RNA EDITING OF POSITION
245.
STRAIN=Berkeley; TISSUE=Head;
PubMed=12537569; DOI=10.1186/gb-2002-3-12-research0080;
Stapleton M., Carlson J.W., Brokstein P., Yu C., Champe M.,
George R.A., Guarin H., Kronmiller B., Pacleb J.M., Park S., Wan K.H.,
Rubin G.M., Celniker S.E.;
"A Drosophila full-length cDNA resource.";
Genome Biol. 3:RESEARCH0080.1-RESEARCH0080.8(2002).
[4]
SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND DEVELOPMENTAL STAGE.
PubMed=15700158; DOI=10.1007/s00427-005-0470-4;
Dee C.T., Moffat K.G.;
"A novel family of mitochondrial proteins is represented by the
Drosophila genes slmo, preli-like and real-time.";
Dev. Genes Evol. 215:248-254(2005).
[5]
RNA EDITING OF POSITION 245.
PubMed=17018572; DOI=10.1261/rna.254306;
Stapleton M., Carlson J.W., Celniker S.E.;
"RNA editing in Drosophila melanogaster: new targets and functional
consequences.";
RNA 12:1922-1932(2006).
[6]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-477, AND IDENTIFICATION
BY MASS SPECTROMETRY.
TISSUE=Embryo;
PubMed=18327897; DOI=10.1021/pr700696a;
Zhai B., Villen J., Beausoleil S.A., Mintseris J., Gygi S.P.;
"Phosphoproteome analysis of Drosophila melanogaster embryos.";
J. Proteome Res. 7:1675-1682(2008).
-!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000269|PubMed:15700158}.
-!- TISSUE SPECIFICITY: Restricted to the developing gut and central
nervous system (CNS). {ECO:0000269|PubMed:15700158}.
-!- DEVELOPMENTAL STAGE: Detected from at stage 7, where it is
expressed in the early germ band. By stage 11, when the germ band
is fully extended, it is expressed strongly in the ventral
neuroectoderm, which represents the progenitor of the CNS. At this
time, a small region of particularly strong expression is visible
at the tip of the extended germ band marking the proctodeum (the
primordial hindgut) and expression is also visible in the anterior
midgut and the foregut primordial region known as the stomodeum.
Expression then persists in both the emerging gut and nervous
system during the next three developmental stages (12-14). Strong
expression in the primordial midgut is rapidly down-regulated
prior to stage 15, by when the presumptive midgut has closed both
ventrally and dorsally and is largely established. However,
expression persists in the hindgut as it continues to develop by
projecting towards the antero-dorsal region of the embryo and is
also evident in differentiating components of the foregut, which
might include the stomatogastric nervous system. Interestingly, it
is expressed strongly throughout the developing CNS and the
intensity of this staining is maintained through stage 16 during
major periods of developmental reorganization, while expression in
regions of the gut is rapidly down-regulated. Expression continues
in the CNS late into stage 17, but is also clearly reduced by the
end of stage 17 immediately prior to hatching. Expressed during
all subsequent developmental stages from first instar larvae
through to adulthood. {ECO:0000269|PubMed:15700158}.
-!- RNA EDITING: Modified_positions=245 {ECO:0000269|PubMed:12537569,
ECO:0000269|PubMed:17018572}; Note=Partially edited. Target of
Adar.;
-----------------------------------------------------------------------
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
Distributed under the Creative Commons Attribution (CC BY 4.0) License
-----------------------------------------------------------------------
EMBL; AE014134; AAF52383.2; -; Genomic_DNA.
EMBL; AY058298; AAL13527.1; -; mRNA.
RefSeq; NP_001285672.1; NM_001298743.1.
RefSeq; NP_609028.2; NM_135184.4.
UniGene; Dm.4206; -.
ProteinModelPortal; Q9VMD6; -.
BioGrid; 60056; 1.
STRING; 7227.FBpp0302983; -.
iPTMnet; Q9VMD6; -.
PaxDb; Q9VMD6; -.
PRIDE; Q9VMD6; -.
EnsemblMetazoa; FBtr0079272; FBpp0078902; FBgn0031814.
EnsemblMetazoa; FBtr0339788; FBpp0308835; FBgn0031814.
GeneID; 33899; -.
KEGG; dme:Dmel_CG9528; -.
UCSC; CG9528-RA; d. melanogaster.
CTD; 33899; -.
FlyBase; FBgn0031814; retm.
eggNOG; KOG1471; Eukaryota.
eggNOG; ENOG410XRSQ; LUCA.
GeneTree; ENSGT00550000074580; -.
InParanoid; Q9VMD6; -.
OMA; AGGWHHH; -.
OrthoDB; EOG091G0V9N; -.
PhylomeDB; Q9VMD6; -.
GenomeRNAi; 33899; -.
PRO; PR:Q9VMD6; -.
Proteomes; UP000000803; Chromosome 2L.
Bgee; FBgn0031814; Expressed in 25 organ(s), highest expression level in antenna.
ExpressionAtlas; Q9VMD6; baseline and differential.
Genevisible; Q9VMD6; DM.
GO; GO:0005739; C:mitochondrion; IDA:UniProtKB.
CDD; cd00170; SEC14; 1.
Gene3D; 3.40.525.10; -; 1.
InterPro; IPR001251; CRAL-TRIO_dom.
InterPro; IPR036865; CRAL-TRIO_dom_sf.
InterPro; IPR011074; CRAL/TRIO_N_dom.
InterPro; IPR036273; CRAL/TRIO_N_dom_sf.
InterPro; IPR009038; GOLD_dom.
InterPro; IPR036598; GOLD_dom_sf.
InterPro; IPR006797; PRELI/MSF1_dom.
Pfam; PF00650; CRAL_TRIO; 1.
Pfam; PF03765; CRAL_TRIO_N; 1.
Pfam; PF04707; PRELI; 1.
SMART; SM01100; CRAL_TRIO_N; 1.
SMART; SM00516; SEC14; 1.
SUPFAM; SSF101576; SSF101576; 1.
SUPFAM; SSF46938; SSF46938; 1.
SUPFAM; SSF52087; SSF52087; 1.
PROSITE; PS50191; CRAL_TRIO; 1.
PROSITE; PS50866; GOLD; 1.
PROSITE; PS50904; PRELI_MSF1; 1.
1: Evidence at protein level;
Complete proteome; Mitochondrion; Phosphoprotein; Reference proteome;
RNA editing.
CHAIN 1 659 Protein real-time.
/FTId=PRO_0000210763.
DOMAIN 3 175 PRELI/MSF1. {ECO:0000255|PROSITE-
ProRule:PRU00158}.
DOMAIN 286 462 CRAL-TRIO. {ECO:0000255|PROSITE-
ProRule:PRU00056}.
DOMAIN 512 631 GOLD. {ECO:0000255|PROSITE-
ProRule:PRU00096}.
MOD_RES 477 477 Phosphoserine.
{ECO:0000269|PubMed:18327897}.
VARIANT 245 245 Q -> R (in RNA edited version).
SEQUENCE 659 AA; 75679 MW; 3E6D07E266081080 CRC64;
MVQKFQSPVR VYKYPFELVM KAYERRFPTC PQMPIVLDCE VIKDESLEDG AKRNTSRRCK
LAVDAPYIFK KLIGVDHVYF LQHNFLDLAN RTLSIEAVNE SFSSRIEIFE RCRYYAHPDN
SEWTCFDQSA TLDIKNFFGF EHSMEKMGMK QYTQTTLKGK EIIEFFIGQL REEGITHVER
WTSPSDATKS PTLDQASDQQ HSILLDGDFI ARSLGQLSPM QESKLLELRK MLDGVDDLER
VPSYQTILRF LAARDWHVSQ AYAMLCDSLR WRREHRIDAL LAEYSKPAVV VEHFPGGWHH
LDKDGRPVYI LRLGHMDVKG LLKSLGMDGL LRLALHICEE GIQKINESAE RLEKPVLNWS
LLVDLEGLSM RHLWRPGIKA LLNIIETVER NYPETMGRVL VVRAPRVFPI AWTIVSAFID
EHTRSKFLFY GPDCAHMKDG LAQYLDEEIV PDFLGGPCKT MIHEGGLVPK TLYKMNSLED
HDDEVTAELP TTAAAQALVP GKRLSANQQH DHRNLYKSVD LKAGFAHELL IRNEDPKSVL
TWDFDVMRND LHFTLYRVTQ ELPEKNDSAV SYFDLQDFVE GVNYFREEPT LICRHKESVQ
GSHVMHHNDS YLMHWFSPSG AQLNVFYEVL SSANYKGSMT SLQSAFSSNS SAASSVQSR


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