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Protein transport protein USE1 (SNARE-like tail-anchored protein 1) (Unconventional SNARE in the endoplasmic reticulum protein 1)

 USE1_YEAST              Reviewed;         245 AA.
P53146; D6VU47;
01-OCT-1996, integrated into UniProtKB/Swiss-Prot.
01-OCT-1996, sequence version 1.
05-JUL-2017, entry version 125.
RecName: Full=Protein transport protein USE1;
AltName: Full=SNARE-like tail-anchored protein 1;
AltName: Full=Unconventional SNARE in the endoplasmic reticulum protein 1;
Name=USE1; Synonyms=SLT1; OrderedLocusNames=YGL098W;
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast).
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces.
NCBI_TaxID=559292;
[1]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=ATCC 204508 / S288c;
PubMed=9290212;
DOI=10.1002/(SICI)1097-0061(19970915)13:11<1077::AID-YEA152>3.3.CO;2-P;
Rieger M., Brueckner M., Schaefer M., Mueller-Auer S.;
"Sequence analysis of 203 kilobases from Saccharomyces cerevisiae
chromosome VII.";
Yeast 13:1077-1090(1997).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC 204508 / S288c;
PubMed=9169869;
Tettelin H., Agostoni-Carbone M.L., Albermann K., Albers M.,
Arroyo J., Backes U., Barreiros T., Bertani I., Bjourson A.J.,
Brueckner M., Bruschi C.V., Carignani G., Castagnoli L., Cerdan E.,
Clemente M.L., Coblenz A., Coglievina M., Coissac E., Defoor E.,
Del Bino S., Delius H., Delneri D., de Wergifosse P., Dujon B.,
Durand P., Entian K.-D., Eraso P., Escribano V., Fabiani L.,
Fartmann B., Feroli F., Feuermann M., Frontali L., Garcia-Gonzalez M.,
Garcia-Saez M.I., Goffeau A., Guerreiro P., Hani J., Hansen M.,
Hebling U., Hernandez K., Heumann K., Hilger F., Hofmann B.,
Indge K.J., James C.M., Klima R., Koetter P., Kramer B., Kramer W.,
Lauquin G., Leuther H., Louis E.J., Maillier E., Marconi A.,
Martegani E., Mazon M.J., Mazzoni C., McReynolds A.D.K.,
Melchioretto P., Mewes H.-W., Minenkova O., Mueller-Auer S.,
Nawrocki A., Netter P., Neu R., Nombela C., Oliver S.G., Panzeri L.,
Paoluzi S., Plevani P., Portetelle D., Portillo F., Potier S.,
Purnelle B., Rieger M., Riles L., Rinaldi T., Robben J.,
Rodrigues-Pousada C., Rodriguez-Belmonte E., Rodriguez-Torres A.M.,
Rose M., Ruzzi M., Saliola M., Sanchez-Perez M., Schaefer B.,
Schaefer M., Scharfe M., Schmidheini T., Schreer A., Skala J.,
Souciet J.-L., Steensma H.Y., Talla E., Thierry A., Vandenbol M.,
van der Aart Q.J.M., Van Dyck L., Vanoni M., Verhasselt P., Voet M.,
Volckaert G., Wambutt R., Watson M.D., Weber N., Wedler E., Wedler H.,
Wipfli P., Wolf K., Wright L.F., Zaccaria P., Zimmermann M.,
Zollner A., Kleine K.;
"The nucleotide sequence of Saccharomyces cerevisiae chromosome VII.";
Nature 387:81-84(1997).
[3]
GENOME REANNOTATION.
STRAIN=ATCC 204508 / S288c;
PubMed=24374639; DOI=10.1534/g3.113.008995;
Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R.,
Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S.,
Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M.,
Cherry J.M.;
"The reference genome sequence of Saccharomyces cerevisiae: Then and
now.";
G3 (Bethesda) 4:389-398(2014).
[4]
NUCLEOTIDE SEQUENCE [GENOMIC DNA].
STRAIN=ATCC 204508 / S288c;
PubMed=17322287; DOI=10.1101/gr.6037607;
Hu Y., Rolfs A., Bhullar B., Murthy T.V.S., Zhu C., Berger M.F.,
Camargo A.A., Kelley F., McCarron S., Jepson D., Richardson A.,
Raphael J., Moreira D., Taycher E., Zuo D., Mohr S., Kane M.F.,
Williamson J., Simpson A.J.G., Bulyk M.L., Harlow E., Marsischky G.,
Kolodner R.D., LaBaer J.;
"Approaching a complete repository of sequence-verified protein-
encoding clones for Saccharomyces cerevisiae.";
Genome Res. 17:536-543(2007).
[5]
FUNCTION, SUBCELLULAR LOCATION, INTERACTION WITH SEC20; SEC22 AND
UFE1, AND MUTAGENESIS OF ASP-183.
PubMed=12853481; DOI=10.1093/emboj/cdg339;
Dilcher M., Veith B., Chidambaram S., Hartmann E., Schmitt H.D.,
Fischer von Mollard G.;
"Use1p is a yeast SNARE protein required for retrograde traffic to the
ER.";
EMBO J. 22:3664-3674(2003).
[6]
SUBCELLULAR LOCATION [LARGE SCALE ANALYSIS].
PubMed=14562095; DOI=10.1038/nature02026;
Huh W.-K., Falvo J.V., Gerke L.C., Carroll A.S., Howson R.W.,
Weissman J.S., O'Shea E.K.;
"Global analysis of protein localization in budding yeast.";
Nature 425:686-691(2003).
[7]
LEVEL OF PROTEIN EXPRESSION [LARGE SCALE ANALYSIS].
PubMed=14562106; DOI=10.1038/nature02046;
Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A.,
Dephoure N., O'Shea E.K., Weissman J.S.;
"Global analysis of protein expression in yeast.";
Nature 425:737-741(2003).
[8]
FUNCTION, SUBCELLULAR LOCATION, MEMBRANE TOPOLOGY, AND IDENTIFICATION
IN A COMPLEX WITH UFE1; SEC22 AND YKT6.
PubMed=12893879; DOI=10.1073/pnas.1734000100;
Burri L., Varlamov O., Doege C.A., Hofmann K., Beilharz T.,
Rothman J.E., Soellner T.H., Lithgow T.;
"A SNARE required for retrograde transport to the endoplasmic
reticulum.";
Proc. Natl. Acad. Sci. U.S.A. 100:9873-9877(2003).
[9]
FUNCTION.
PubMed=12911815; DOI=10.1034/j.1600-0854.2003.00116.x;
Belgareh-Touze N., Corral-Debrinski M., Launhardt H., Galan J.-M.,
Munder T., Le Panse S., Haguenauer-Tsapis R.;
"Yeast functional analysis: identification of two essential genes
involved in ER to Golgi trafficking.";
Traffic 4:607-617(2003).
[10]
FUNCTION.
PubMed=15116429; DOI=10.1002/yea.1063;
Davydenko S.G., Juselius J.K., Munder T., Bogengruber E., Jaentti J.,
Keraenen S.;
"Screening for novel essential genes of Saccharomyces cerevisiae
involved in protein secretion.";
Yeast 21:463-471(2004).
[11]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=19779198; DOI=10.1126/science.1172867;
Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.;
"Global analysis of Cdk1 substrate phosphorylation sites provides
insights into evolution.";
Science 325:1682-1686(2009).
-!- FUNCTION: SNARE required for targeting and fusion of Golgi-derived
retrograde transport vesicles with the ER.
{ECO:0000269|PubMed:12853481, ECO:0000269|PubMed:12893879,
ECO:0000269|PubMed:12911815, ECO:0000269|PubMed:15116429}.
-!- SUBUNIT: Component of a SNARE complex consisting of UFE1, USE1,
SEC20 and SEC22 or YKT6. {ECO:0000269|PubMed:12893879}.
-!- INTERACTION:
P28791:SEC20; NbExp=4; IntAct=EBI-23881, EBI-16572;
Q12745:SEC39; NbExp=3; IntAct=EBI-23881, EBI-31898;
P41834:UFE1; NbExp=2; IntAct=EBI-23881, EBI-20016;
-!- SUBCELLULAR LOCATION: Endoplasmic reticulum membrane
{ECO:0000269|PubMed:12853481, ECO:0000269|PubMed:12893879,
ECO:0000269|PubMed:14562095}; Single-pass type IV membrane protein
{ECO:0000269|PubMed:12853481, ECO:0000269|PubMed:12893879,
ECO:0000269|PubMed:14562095}.
-!- MISCELLANEOUS: Present with 937 molecules/cell in log phase SD
medium. {ECO:0000269|PubMed:14562106}.
-!- SIMILARITY: Belongs to the USE1 family. {ECO:0000305}.
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EMBL; Z72620; CAA96804.1; -; Genomic_DNA.
EMBL; AY557814; AAS56140.1; -; Genomic_DNA.
EMBL; BK006941; DAA08008.1; -; Genomic_DNA.
PIR; S64105; S64105.
RefSeq; NP_011417.1; NM_001180963.1.
ProteinModelPortal; P53146; -.
BioGrid; 33151; 283.
DIP; DIP-5478N; -.
IntAct; P53146; 9.
MINT; MINT-475168; -.
STRING; 4932.YGL098W; -.
MaxQB; P53146; -.
PRIDE; P53146; -.
EnsemblFungi; YGL098W; YGL098W; YGL098W.
GeneID; 852780; -.
KEGG; sce:YGL098W; -.
EuPathDB; FungiDB:YGL098W; -.
SGD; S000003066; USE1.
HOGENOM; HOG000000925; -.
InParanoid; P53146; -.
KO; K08507; -.
OMA; DRQIEDQ; -.
OrthoDB; EOG092C5D1S; -.
BioCyc; YEAST:G3O-30598-MONOMER; -.
PRO; PR:P53146; -.
Proteomes; UP000002311; Chromosome VII.
GO; GO:0071458; C:integral component of cytoplasmic side of endoplasmic reticulum membrane; IDA:SGD.
GO; GO:0031201; C:SNARE complex; IDA:SGD.
GO; GO:0005484; F:SNAP receptor activity; IMP:SGD.
GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW.
GO; GO:0006890; P:retrograde vesicle-mediated transport, Golgi to ER; IMP:SGD.
GO; GO:0048279; P:vesicle fusion with endoplasmic reticulum; IC:SGD.
InterPro; IPR019150; Vesicle_transport_protein_Use1.
PANTHER; PTHR13050; PTHR13050; 1.
Pfam; PF09753; Use1; 1.
1: Evidence at protein level;
Complete proteome; Endoplasmic reticulum; ER-Golgi transport;
Membrane; Protein transport; Reference proteome; Transmembrane;
Transmembrane helix; Transport.
CHAIN 1 245 Protein transport protein USE1.
/FTId=PRO_0000215584.
TOPO_DOM 1 218 Cytoplasmic. {ECO:0000255}.
TRANSMEM 219 239 Helical; Anchor for type IV membrane
protein. {ECO:0000255}.
TOPO_DOM 240 245 Lumenal. {ECO:0000255}.
MUTAGEN 183 183 D->G: In USE1-0; slows down protein
transport from the endoplasmic reticulum
to the Golgi at 37 degrees Celsius.
{ECO:0000269|PubMed:12853481}.
SEQUENCE 245 AA; 28107 MW; 213ABBF0492E80EF CRC64;
MAETSNDPFL SYVLSSKQLT NLNRLRRKAV TKQLGSSDDN KVSEEFLRYQ HTYQREAFEY
LQTKHDAHKI MESQYEQYQS SSKTRRYSID LDSVDAVDTE SQTEYPNEEF IDRNEDSEAV
MELRKRLLGK GQNKGLGYET TKSVDRQIED QDTLQQDLIQ DMSKLVGSLK QGAVAFQSAL
DEDKQVLGAA EIGIQVASQG LMDVSGKLRK YDKSKLSYLF YITVFIFMIL GLVFTFIIIQ
LFPAL


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