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Protochlorophyllide reductase B, chloroplastic (PCR B) (EC 1.3.1.33) (NADPH-protochlorophyllide oxidoreductase B) (POR B)

 PORB_ORYSJ              Reviewed;         402 AA.
Q8W3D9; A0A0P0XWE3; Q337H5; Q7XD32;
26-MAY-2009, integrated into UniProtKB/Swiss-Prot.
01-MAR-2002, sequence version 1.
23-MAY-2018, entry version 108.
RecName: Full=Protochlorophyllide reductase B, chloroplastic;
Short=PCR B;
EC=1.3.1.33;
AltName: Full=NADPH-protochlorophyllide oxidoreductase B;
Short=POR B;
Flags: Precursor;
Name=PORB; OrderedLocusNames=Os10g0496900, LOC_Os10g35370;
ORFNames=OSJNBa0017E08.8;
Oryza sativa subsp. japonica (Rice).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade;
Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
NCBI_TaxID=39947;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
PubMed=12791992; DOI=10.1126/science.1083523;
Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K.,
Thompson S., Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S.,
Henry D., Oates R., Palmer M., Pries G., Gibson J., Anderson H.,
Paradkar M., Crane L., Dale J., Carver M.B., Wood T., Frisch D.,
Engler F., Soderlund C., Palmer L.E., Teytelman L., Nascimento L.,
De la Bastide M., Spiegel L., Ware D., O'Shaughnessy A., Dike S.,
Dedhia N., Preston R., Huang E., Ferraro K., Kuit K., Miller B.,
Zutavern T., Katzenberger F., Muller S., Balija V., Martienssen R.A.,
Stein L., Minx P., Johnson D., Cordum H., Mardis E., Cheng Z.,
Jiang J., Wilson R., McCombie W.R., Wing R.A., Yuan Q., Ouyang S.,
Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Tsitrin T.,
Overton L., Bera J., Kim M., Jin S., Tallon L., Ciecko A., Pai G.,
Van Aken S., Utterback T., Reidmuller S., Bormann J., Feldblyum T.,
Hsiao J., Zismann V., Blunt S., de Vazeille A.R., Shaffer T., Koo H.,
Suh B., Yang Q., Haas B., Peterson J., Pertea M., Volfovsky N.,
Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R.,
Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S.,
Bowers J.E., Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.;
"In-depth view of structure, activity, and evolution of rice
chromosome 10.";
Science 300:1566-1569(2003).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Nipponbare;
PubMed=16100779; DOI=10.1038/nature03895;
International rice genome sequencing project (IRGSP);
"The map-based sequence of the rice genome.";
Nature 436:793-800(2005).
[3]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
PubMed=18089549; DOI=10.1093/nar/gkm978;
The rice annotation project (RAP);
"The rice annotation project database (RAP-DB): 2008 update.";
Nucleic Acids Res. 36:D1028-D1033(2008).
[4]
GENOME REANNOTATION.
STRAIN=cv. Nipponbare;
PubMed=24280374; DOI=10.1186/1939-8433-6-4;
Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H.,
McCombie W.R., Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S.,
Childs K.L., Davidson R.M., Lin H., Quesada-Ocampo L.,
Vaillancourt B., Sakai H., Lee S.S., Kim J., Numa H., Itoh T.,
Buell C.R., Matsumoto T.;
"Improvement of the Oryza sativa Nipponbare reference genome using
next generation sequence and optical map data.";
Rice 6:4-4(2013).
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
STRAIN=cv. Nipponbare;
PubMed=12869764; DOI=10.1126/science.1081288;
The rice full-length cDNA consortium;
"Collection, mapping, and annotation of over 28,000 cDNA clones from
japonica rice.";
Science 301:376-379(2003).
-!- FUNCTION: Phototransformation of protochlorophyllide (Pchlide) to
chlorophyllide (Chlide).
-!- CATALYTIC ACTIVITY: Chlorophyllide a + NADP(+) =
protochlorophyllide + NADPH.
-!- PATHWAY: Porphyrin-containing compound metabolism; chlorophyll
biosynthesis.
-!- SUBCELLULAR LOCATION: Plastid, chloroplast {ECO:0000250}.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q8W3D9-1; Sequence=Displayed;
Note=Derived from EST data. No experimental confirmation
available.;
Name=2;
IsoId=Q8W3D9-2; Sequence=VSP_037403;
-!- SIMILARITY: Belongs to the short-chain dehydrogenases/reductases
(SDR) family. POR subfamily. {ECO:0000305}.
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EMBL; AC068923; AAL58280.1; -; Genomic_DNA.
EMBL; DP000086; AAP54438.1; -; Genomic_DNA.
EMBL; DP000086; ABB47824.1; -; Genomic_DNA.
EMBL; AP008216; BAF26869.1; -; Genomic_DNA.
EMBL; AP014966; BAT11485.1; -; Genomic_DNA.
EMBL; AK068143; BAG90777.1; -; mRNA.
RefSeq; XP_015614945.1; XM_015759459.1. [Q8W3D9-1]
UniGene; Os.88103; -.
ProteinModelPortal; Q8W3D9; -.
SMR; Q8W3D9; -.
STRING; 39947.LOC_Os10g35370.1; -.
PaxDb; Q8W3D9; -.
PRIDE; Q8W3D9; -.
EnsemblPlants; Os10t0496900-02; Os10t0496900-02; Os10g0496900. [Q8W3D9-1]
GeneID; 4349004; -.
Gramene; Os10t0496900-02; Os10t0496900-02; Os10g0496900. [Q8W3D9-1]
KEGG; osa:4349004; -.
eggNOG; KOG1208; Eukaryota.
eggNOG; COG1028; LUCA.
InParanoid; Q8W3D9; -.
KO; K00218; -.
UniPathway; UPA00668; -.
Proteomes; UP000059680; Chromosome 10.
ExpressionAtlas; Q8W3D9; differential.
GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
GO; GO:0016630; F:protochlorophyllide reductase activity; IEA:UniProtKB-EC.
GO; GO:0015995; P:chlorophyll biosynthetic process; IEA:UniProtKB-UniPathway.
GO; GO:0015979; P:photosynthesis; IEA:UniProtKB-KW.
InterPro; IPR036291; NAD(P)-bd_dom_sf.
InterPro; IPR005979; Prochl_reduct.
InterPro; IPR002347; SDR_fam.
PANTHER; PTHR44419; PTHR44419; 1.
Pfam; PF00106; adh_short; 1.
PRINTS; PR00081; GDHRDH.
SUPFAM; SSF51735; SSF51735; 2.
TIGRFAMs; TIGR01289; LPOR; 1.
2: Evidence at transcript level;
Alternative splicing; Chlorophyll biosynthesis; Chloroplast;
Complete proteome; NADP; Oxidoreductase; Photosynthesis; Plastid;
Reference proteome; Transit peptide.
TRANSIT 1 ? Chloroplast. {ECO:0000255}.
CHAIN ? 402 Protochlorophyllide reductase B,
chloroplastic.
/FTId=PRO_0000376077.
VAR_SEQ 1 114 Missing (in isoform 2).
{ECO:0000303|PubMed:12869764}.
/FTId=VSP_037403.
SEQUENCE 402 AA; 42766 MW; 749869F7316DFAAA CRC64;
MALQAATTTS FLPSALSARK EGAVKDSAFL GVRLGDGLKL ETSALGLRTK RVSTSSVAIR
AQASAAVSSP TVTPASPSGK QTLRKGTAVI TGASSGLGLA TAKALAETGR WHVVMGCRDF
LKASRAAKAA GMEKGSYTIV HLDLASLDSV RQFVANVRRL EMPVDVVVCN AAVYQPTAKQ
PSFTADGFEM SVGVNHLGHF LLARELLADL TSSDYPSKRL IIVGSITGNT NTLAGNVPPK
ANLGDLRGLA SGLDGVSSSA MIDGGEFDGA KAYKDSKVCN MLTMQEFHRR YHGETGVTFA
SLYPGCIATT GLFREHVPLF RLLFPPFQKY ITKGYVSEEE AGKRLAQVVS DPSLTKSGVY
WSWNNNSASF ENQLSEEASD PEKAKKVWEL SEKLVGLADH DQ


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