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Putative ATP-dependent RNA helicase DDX47 (Putative ATP-dependent RNA helicase DDX47 isoform 1)

 G5BYF5_HETGA            Unreviewed;       454 AA.
G5BYF5;
14-DEC-2011, integrated into UniProtKB/TrEMBL.
14-DEC-2011, sequence version 1.
25-OCT-2017, entry version 27.
SubName: Full=Putative ATP-dependent RNA helicase DDX47 {ECO:0000313|EMBL:EHB14316.1};
SubName: Full=Putative ATP-dependent RNA helicase DDX47 isoform 1 {ECO:0000313|EMBL:JAN98100.1};
Name=DDX47 {ECO:0000313|EMBL:JAN98100.1};
ORFNames=GW7_02278 {ECO:0000313|EMBL:EHB14316.1};
Heterocephalus glaber (Naked mole rat).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia;
Hystricomorpha; Bathyergidae; Heterocephalus.
NCBI_TaxID=10181 {ECO:0000313|EMBL:EHB14316.1, ECO:0000313|Proteomes:UP000006813};
[1] {ECO:0000313|EMBL:EHB14316.1, ECO:0000313|Proteomes:UP000006813}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=21993625; DOI=10.1038/nature10533;
Kim E.B., Fang X., Fushan A.A., Huang Z., Lobanov A.V., Han L.,
Marino S.M., Sun X., Turanov A.A., Yang P., Yim S.H., Zhao X.,
Kasaikina M.V., Stoletzki N., Peng C., Polak P., Xiong Z., Kiezun A.,
Zhu Y., Chen Y., Kryukov G.V., Zhang Q., Peshkin L., Yang L.,
Bronson R.T., Buffenstein R., Wang B., Han C., Li Q., Chen L.,
Zhao W., Sunyaev S.R., Park T.J., Zhang G., Wang J., Gladyshev V.N.;
"Genome sequencing reveals insights into physiology and longevity of
the naked mole rat.";
Nature 479:223-227(2011).
[2] {ECO:0000313|EMBL:JAN98100.1}
NUCLEOTIDE SEQUENCE.
TISSUE=Skin {ECO:0000313|EMBL:JAN98100.1};
Bens M., Sahm A., Jahn N., Morhart M., Holtze S., Hildebrandt T.B.,
Platzer M., Szafranski K.;
"FRAMA: From RNA-seq data to annotated mRNA assemblies.";
Submitted (OCT-2015) to the EMBL/GenBank/DDBJ databases.
-!- SIMILARITY: Belongs to the DEAD box helicase family.
{ECO:0000256|RuleBase:RU000492}.
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EMBL; JH172446; EHB14316.1; -; Genomic_DNA.
EMBL; GEBF01005532; JAN98100.1; -; Transcribed_RNA.
RefSeq; XP_004845914.1; XM_004845857.2.
Ensembl; ENSHGLT00000010758; ENSHGLP00000010638; ENSHGLG00000007623.
Ensembl; ENSHGLT00100013337; ENSHGLP00100013186; ENSHGLG00100009764.
GeneID; 101697827; -.
KEGG; hgl:101697827; -.
CTD; 51202; -.
InParanoid; G5BYF5; -.
KO; K14777; -.
Proteomes; UP000006813; Unassembled WGS sequence.
GO; GO:0016020; C:membrane; IEA:Ensembl.
GO; GO:0005730; C:nucleolus; IEA:Ensembl.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
GO; GO:0003723; F:RNA binding; IEA:Ensembl.
GO; GO:0008625; P:extrinsic apoptotic signaling pathway via death domain receptors; IEA:Ensembl.
GO; GO:0008380; P:RNA splicing; IEA:Ensembl.
GO; GO:0006364; P:rRNA processing; IEA:Ensembl.
CDD; cd00079; HELICc; 1.
InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
InterPro; IPR014001; Helicase_ATP-bd.
InterPro; IPR001650; Helicase_C.
InterPro; IPR027417; P-loop_NTPase.
InterPro; IPR000629; RNA-helicase_DEAD-box_CS.
InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
Pfam; PF00270; DEAD; 1.
Pfam; PF00271; Helicase_C; 1.
SMART; SM00487; DEXDc; 1.
SMART; SM00490; HELICc; 1.
SUPFAM; SSF52540; SSF52540; 1.
PROSITE; PS00039; DEAD_ATP_HELICASE; 1.
PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
PROSITE; PS51194; HELICASE_CTER; 1.
PROSITE; PS51195; Q_MOTIF; 1.
3: Inferred from homology;
ATP-binding {ECO:0000256|RuleBase:RU000492,
ECO:0000313|EMBL:EHB14316.1};
Complete proteome {ECO:0000313|Proteomes:UP000006813};
Helicase {ECO:0000256|RuleBase:RU000492, ECO:0000313|EMBL:EHB14316.1};
Hydrolase {ECO:0000256|RuleBase:RU000492,
ECO:0000313|EMBL:EHB14316.1};
Nucleotide-binding {ECO:0000256|RuleBase:RU000492,
ECO:0000313|EMBL:EHB14316.1};
Reference proteome {ECO:0000313|Proteomes:UP000006813}.
DOMAIN 23 51 Q_MOTIF. {ECO:0000259|PROSITE:PS51195}.
DOMAIN 54 225 Helicase ATP-binding.
{ECO:0000259|PROSITE:PS51192}.
DOMAIN 236 396 Helicase C-terminal.
{ECO:0000259|PROSITE:PS51194}.
MOTIF 23 51 Q motif. {ECO:0000256|PROSITE-
ProRule:PRU00552}.
SEQUENCE 454 AA; 50598 MW; 7BD894DD6F4B724D CRC64;
MAASGEHDSL PEEPQPTVEE ETKTFKDLGV TDVLCEACDQ LGWTKPTKIQ IEAIPMALQG
RDIIGLAETG SGKTGAFALP ILNALLDTPQ RLFALVLTPT RELAFQISEQ FEALGSSIGV
QCAVIVGGID SMSQSLALAK KPHVVIATPG RLIDHLENTK GFNLRALKYL VMDEADRILN
MDFETEVDKI LKVIPRDRKT FLFSATMTKK VQKLQRAALK NPVKCAVSSK YQTVEKLQQY
YLFIPSKFKD TYLVYILNEL AGNSFMIFCS TCNNTQRTAL LLRNLGFTAI PLHGQMSQSK
RLGSLNKFKA KARSILLATD VASRGLDIPH VDVVVNFDIP THSKDYIHRV GRTARAGRSG
KAITFVTQYD VELFQRIEHL IGKKLPVFPT QDDEVMMLTE RVTEAQRFAR MELREHGEKK
KRSREDAGDN DDMEGAIGVR NKVAGGKMKK RKGR


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