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Putative RNA-binding protein Luc7-like 1

 LUC7L_MOUSE             Reviewed;         371 AA.
Q9CYI4; Q8K247; Q9CWM1;
10-MAY-2004, integrated into UniProtKB/Swiss-Prot.
10-MAY-2004, sequence version 2.
07-JUN-2017, entry version 118.
RecName: Full=Putative RNA-binding protein Luc7-like 1;
Name=Luc7l;
Mus musculus (Mouse).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
NCBI_TaxID=10090;
[1]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
STRAIN=C57BL/6J; TISSUE=Embryo, and Embryonic stem cell;
PubMed=16141072; DOI=10.1126/science.1112014;
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N.,
Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K.,
Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M.,
Davis M.J., Wilming L.G., Aidinis V., Allen J.E.,
Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L.,
Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M.,
Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R.,
Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G.,
di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G.,
Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M.,
Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E.,
Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N.,
Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T.,
Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H.,
Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K.,
Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J.,
Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L.,
Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K.,
Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P.,
Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O.,
Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G.,
Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M.,
Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C.,
Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y.,
Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B.,
Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K.,
Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A.,
Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K.,
Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C.,
Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J.,
Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y.,
Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T.,
Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N.,
Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N.,
Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S.,
Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J.,
Hayashizaki Y.;
"The transcriptional landscape of the mammalian genome.";
Science 309:1559-1563(2005).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
TISSUE=Mammary tumor;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[3]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Kidney, Lung, Pancreas, Spleen, and Testis;
PubMed=21183079; DOI=10.1016/j.cell.2010.12.001;
Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R.,
Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.;
"A tissue-specific atlas of mouse protein phosphorylation and
expression.";
Cell 143:1174-1189(2010).
-!- FUNCTION: May bind to RNA via its Arg/Ser-rich domain.
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=2;
Name=1;
IsoId=Q9CYI4-1; Sequence=Displayed;
Name=2;
IsoId=Q9CYI4-2; Sequence=VSP_010216;
Note=No experimental confirmation available.;
-!- SIMILARITY: Belongs to the Luc7 family. {ECO:0000305}.
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EMBL; AK010539; BAB27015.1; -; mRNA.
EMBL; AK017655; BAB30856.1; -; mRNA.
EMBL; BC034135; AAH34135.1; -; mRNA.
CCDS; CCDS28549.1; -. [Q9CYI4-1]
RefSeq; NP_080157.1; NM_025881.3.
RefSeq; NP_082466.2; NM_028190.3. [Q9CYI4-1]
RefSeq; XP_017173104.1; XM_017317615.1. [Q9CYI4-2]
UniGene; Mm.440216; -.
ProteinModelPortal; Q9CYI4; -.
SMR; Q9CYI4; -.
BioGrid; 211851; 4.
IntAct; Q9CYI4; 1.
MINT; MINT-4100708; -.
STRING; 10090.ENSMUSP00000110627; -.
iPTMnet; Q9CYI4; -.
PhosphoSitePlus; Q9CYI4; -.
EPD; Q9CYI4; -.
PaxDb; Q9CYI4; -.
PeptideAtlas; Q9CYI4; -.
PRIDE; Q9CYI4; -.
Ensembl; ENSMUST00000114976; ENSMUSP00000110627; ENSMUSG00000024188. [Q9CYI4-1]
GeneID; 66978; -.
KEGG; mmu:66978; -.
UCSC; uc008bdy.2; mouse. [Q9CYI4-1]
CTD; 55692; -.
MGI; MGI:1914228; Luc7l.
eggNOG; KOG0796; Eukaryota.
eggNOG; COG5200; LUCA.
GeneTree; ENSGT00730000110670; -.
HOGENOM; HOG000215956; -.
HOVERGEN; HBG062167; -.
InParanoid; Q9CYI4; -.
OMA; REESWER; -.
OrthoDB; EOG091G0PSO; -.
PhylomeDB; Q9CYI4; -.
TreeFam; TF317607; -.
ChiTaRS; Luc7l; mouse.
PRO; PR:Q9CYI4; -.
Proteomes; UP000000589; Chromosome 17.
Bgee; ENSMUSG00000024188; -.
CleanEx; MM_LUC7L; -.
ExpressionAtlas; Q9CYI4; baseline and differential.
Genevisible; Q9CYI4; MM.
GO; GO:0005634; C:nucleus; IDA:MGI.
GO; GO:0005685; C:U1 snRNP; IBA:GO_Central.
GO; GO:0071004; C:U2-type prespliceosome; IBA:GO_Central.
GO; GO:0042802; F:identical protein binding; ISO:MGI.
GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
GO; GO:0050733; F:RS domain binding; IPI:MGI.
GO; GO:0006376; P:mRNA splice site selection; IBA:GO_Central.
GO; GO:0045843; P:negative regulation of striated muscle tissue development; IDA:MGI.
InterPro; IPR004882; Luc7-rel.
PANTHER; PTHR12375; PTHR12375; 1.
Pfam; PF03194; LUC7; 1.
1: Evidence at protein level;
Alternative splicing; Coiled coil; Complete proteome; Phosphoprotein;
Reference proteome.
CHAIN 1 371 Putative RNA-binding protein Luc7-like 1.
/FTId=PRO_0000187281.
COILED 87 177 {ECO:0000255}.
COILED 220 256 {ECO:0000255}.
COMPBIAS 239 344 Arg/Ser-rich.
MOD_RES 336 336 Phosphoserine.
{ECO:0000250|UniProtKB:Q9NQ29}.
MOD_RES 363 363 Phosphoserine.
{ECO:0000250|UniProtKB:Q9NQ29}.
VAR_SEQ 1 53 Missing (in isoform 2).
{ECO:0000303|PubMed:15489334}.
/FTId=VSP_010216.
CONFLICT 213 213 K -> E (in Ref. 1; BAB30856).
{ECO:0000305}.
CONFLICT 224 226 KLD -> SLI (in Ref. 1; BAB30856).
{ECO:0000305}.
CONFLICT 289 289 K -> R (in Ref. 1; BAB30856).
{ECO:0000305}.
SEQUENCE 371 AA; 43934 MW; D63AC7111F855F4F CRC64;
MSAQAQMRAL LDQLMGTARD GDETRQRVKF TDDRVCKSHL LDCCPHDILA GTRMDLGECT
KIHDLALRAD YEIASKERDL FFELDAMDHL ESFIAECDRR TELAKKRLAE TQEEISAEVS
AKAEKVHELN EEIGKLLAKA EQLGAEGNVD ESQKILMEVE KVRAKKKEAE EEYRNSMPAS
SFQQQKLRVC EVCSAYLGLH DNDRRLADHF GGKLHLGFIQ IREKLDQLRK TVAEKQEKRN
QDRLRRREER EREERLGRRS GSRTRDRRRS RSRDRRRRRS RSTSRERRKF SRSRSRDRYR
RHRSRSRSHS RGHRRASRDR STKYKFSRER SLREESWEYG RNERGPTDWR LENSNGKTAS
RRSEEKEAGE I


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