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Putative RNA-binding protein Luc7-like 1 (Putative SR protein LUC7B1) (SR 89)

 LUC7L_HUMAN             Reviewed;         371 AA.
Q9NQ29; B8ZZ13; Q96S32; Q9NPH4;
10-MAY-2004, integrated into UniProtKB/Swiss-Prot.
01-OCT-2000, sequence version 1.
27-SEP-2017, entry version 134.
RecName: Full=Putative RNA-binding protein Luc7-like 1;
AltName: Full=Putative SR protein LUC7B1;
AltName: Full=SR+89;
Name=LUC7L; Synonyms=LUC7L1;
Homo sapiens (Human).
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
NCBI_TaxID=9606;
[1]
NUCLEOTIDE SEQUENCE (ISOFORM 2).
Utsch B., Albers N., Wickert L., Bidlingmaier F., Ludwig M.;
"SR+89, a gene encoding a serine/arginine-rich protein, is widely
transcribed from human chromosome 16p13.3 proximal to the alpha-globin
cluster. Exclusion of this new gene as a candidate gene for the
hypospadic phenotype associated with homozygous SEA-alpha-
thalassaemia.";
Submitted (JUN-2000) to the EMBL/GenBank/DDBJ databases.
[2]
NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, AND TISSUE
SPECIFICITY.
PubMed=11170747; DOI=10.1006/geno.2000.6394;
Tufarelli C., Frischauf A.-M., Hardison R., Flint J., Higgs D.R.;
"Characterization of a widely expressed gene (LUC7-LIKE; LUC7L)
defining the centromeric boundary of the human alpha-globin domain.";
Genomics 71:307-314(2001).
[3]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=11157797; DOI=10.1093/hmg/10.4.339;
Daniels R.J., Peden J.F., Lloyd C., Horsley S.W., Clark K.,
Tufarelli C., Kearney L., Buckle V.J., Doggett N.A., Flint J.,
Higgs D.R.;
"Sequence, structure and pathology of the fully annotated terminal 2
Mb of the short arm of human chromosome 16.";
Hum. Mol. Genet. 10:339-352(2001).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L.,
Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R.,
Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V.,
Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R.,
Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H.,
Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G.,
Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W.,
Venter J.C.;
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
[5]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
TISSUE=Embryo;
PubMed=14702039; DOI=10.1038/ng1285;
Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R.,
Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H.,
Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.,
Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K.,
Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A.,
Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M.,
Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y.,
Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M.,
Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K.,
Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S.,
Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J.,
Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y.,
Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N.,
Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S.,
Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S.,
Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O.,
Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H.,
Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B.,
Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y.,
Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T.,
Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y.,
Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S.,
Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T.,
Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M.,
Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T.,
Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K.,
Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R.,
Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.;
"Complete sequencing and characterization of 21,243 full-length human
cDNAs.";
Nat. Genet. 36:40-45(2004).
[6]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
PubMed=15616553; DOI=10.1038/nature03187;
Martin J., Han C., Gordon L.A., Terry A., Prabhakar S., She X.,
Xie G., Hellsten U., Chan Y.M., Altherr M., Couronne O., Aerts A.,
Bajorek E., Black S., Blumer H., Branscomb E., Brown N.C., Bruno W.J.,
Buckingham J.M., Callen D.F., Campbell C.S., Campbell M.L.,
Campbell E.W., Caoile C., Challacombe J.F., Chasteen L.A.,
Chertkov O., Chi H.C., Christensen M., Clark L.M., Cohn J.D.,
Denys M., Detter J.C., Dickson M., Dimitrijevic-Bussod M., Escobar J.,
Fawcett J.J., Flowers D., Fotopulos D., Glavina T., Gomez M.,
Gonzales E., Goodstein D., Goodwin L.A., Grady D.L., Grigoriev I.,
Groza M., Hammon N., Hawkins T., Haydu L., Hildebrand C.E., Huang W.,
Israni S., Jett J., Jewett P.B., Kadner K., Kimball H., Kobayashi A.,
Krawczyk M.-C., Leyba T., Longmire J.L., Lopez F., Lou Y., Lowry S.,
Ludeman T., Manohar C.F., Mark G.A., McMurray K.L., Meincke L.J.,
Morgan J., Moyzis R.K., Mundt M.O., Munk A.C., Nandkeshwar R.D.,
Pitluck S., Pollard M., Predki P., Parson-Quintana B., Ramirez L.,
Rash S., Retterer J., Ricke D.O., Robinson D.L., Rodriguez A.,
Salamov A., Saunders E.H., Scott D., Shough T., Stallings R.L.,
Stalvey M., Sutherland R.D., Tapia R., Tesmer J.G., Thayer N.,
Thompson L.S., Tice H., Torney D.C., Tran-Gyamfi M., Tsai M.,
Ulanovsky L.E., Ustaszewska A., Vo N., White P.S., Williams A.L.,
Wills P.L., Wu J.-R., Wu K., Yang J., DeJong P., Bruce D.,
Doggett N.A., Deaven L., Schmutz J., Grimwood J., Richardson P.,
Rokhsar D.S., Eichler E.E., Gilna P., Lucas S.M., Myers R.M.,
Rubin E.M., Pennacchio L.A.;
"The sequence and analysis of duplication-rich human chromosome 16.";
Nature 432:988-994(2004).
[7]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 3).
TISSUE=Blood, and Lung;
PubMed=15489334; DOI=10.1101/gr.2596504;
The MGC Project Team;
"The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC).";
Genome Res. 14:2121-2127(2004).
[8]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-363, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Cervix carcinoma;
PubMed=17081983; DOI=10.1016/j.cell.2006.09.026;
Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P.,
Mann M.;
"Global, in vivo, and site-specific phosphorylation dynamics in
signaling networks.";
Cell 127:635-648(2006).
[9]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Cervix carcinoma;
PubMed=18669648; DOI=10.1073/pnas.0805139105;
Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E.,
Elledge S.J., Gygi S.P.;
"A quantitative atlas of mitotic phosphorylation.";
Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008).
[10]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-363, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Leukemic T-cell;
PubMed=19690332; DOI=10.1126/scisignal.2000007;
Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K.,
Rodionov V., Han D.K.;
"Quantitative phosphoproteomic analysis of T cell receptor signaling
reveals system-wide modulation of protein-protein interactions.";
Sci. Signal. 2:RA46-RA46(2009).
[11]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-363, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
TISSUE=Cervix carcinoma;
PubMed=20068231; DOI=10.1126/scisignal.2000475;
Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L.,
Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S.,
Mann M.;
"Quantitative phosphoproteomics reveals widespread full
phosphorylation site occupancy during mitosis.";
Sci. Signal. 3:RA3-RA3(2010).
[12]
IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=21269460; DOI=10.1186/1752-0509-5-17;
Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P.,
Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J.;
"Initial characterization of the human central proteome.";
BMC Syst. Biol. 5:17-17(2011).
[13]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-363, AND IDENTIFICATION
BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
PubMed=21406692; DOI=10.1126/scisignal.2001570;
Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J.,
Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V.,
Blagoev B.;
"System-wide temporal characterization of the proteome and
phosphoproteome of human embryonic stem cell differentiation.";
Sci. Signal. 4:RS3-RS3(2011).
[14]
PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-332; SER-336 AND
SER-363, AND IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE
ANALYSIS].
TISSUE=Cervix carcinoma, and Erythroleukemia;
PubMed=23186163; DOI=10.1021/pr300630k;
Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J.,
Mohammed S.;
"Toward a comprehensive characterization of a human cancer cell
phosphoproteome.";
J. Proteome Res. 12:260-271(2013).
-!- FUNCTION: May bind to RNA via its Arg/Ser-rich domain.
{ECO:0000269|PubMed:11170747}.
-!- INTERACTION:
Self; NbExp=2; IntAct=EBI-473747, EBI-473747;
Q8IWX8:CHERP; NbExp=2; IntAct=EBI-473747, EBI-2555370;
Q96SB4:SRPK1; NbExp=2; IntAct=EBI-473747, EBI-539478;
P78362:SRPK2; NbExp=2; IntAct=EBI-473747, EBI-593303;
-!- ALTERNATIVE PRODUCTS:
Event=Alternative splicing; Named isoforms=3;
Name=1;
IsoId=Q9NQ29-1; Sequence=Displayed;
Name=2;
IsoId=Q9NQ29-2; Sequence=VSP_010215;
Note=May be due to an intron retention.;
Name=3;
IsoId=Q9NQ29-3; Sequence=VSP_010214;
Note=No experimental confirmation available.;
-!- TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11170747}.
-!- SIMILARITY: Belongs to the Luc7 family. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; AJ404326; CAB93981.1; -; mRNA.
EMBL; AJ404326; CAB93982.1; -; mRNA.
EMBL; AY005111; AAG22846.1; -; mRNA.
EMBL; AE006462; AAK61218.1; -; Genomic_DNA.
EMBL; AK001093; BAA91500.1; -; mRNA.
EMBL; Z69890; CAM26671.1; -; Genomic_DNA.
EMBL; Z69706; CAM26671.1; JOINED; Genomic_DNA.
EMBL; CH471112; EAW85853.1; -; Genomic_DNA.
EMBL; BC003194; AAH03194.1; -; mRNA.
EMBL; BC065198; AAH65198.1; -; mRNA.
CCDS; CCDS10401.1; -. [Q9NQ29-2]
CCDS; CCDS32348.1; -. [Q9NQ29-1]
RefSeq; NP_001307155.1; NM_001320226.1. [Q9NQ29-2]
RefSeq; NP_001317349.1; NM_001330420.1.
RefSeq; NP_060502.1; NM_018032.4. [Q9NQ29-2]
RefSeq; NP_958815.1; NM_201412.2. [Q9NQ29-1]
UniGene; Hs.16803; -.
ProteinModelPortal; Q9NQ29; -.
SMR; Q9NQ29; -.
BioGrid; 120818; 125.
IntAct; Q9NQ29; 24.
MINT; MINT-3071845; -.
STRING; 9606.ENSP00000293872; -.
iPTMnet; Q9NQ29; -.
PhosphoSitePlus; Q9NQ29; -.
BioMuta; LUC7L; -.
DMDM; 47116932; -.
EPD; Q9NQ29; -.
MaxQB; Q9NQ29; -.
PaxDb; Q9NQ29; -.
PeptideAtlas; Q9NQ29; -.
PRIDE; Q9NQ29; -.
DNASU; 55692; -.
Ensembl; ENST00000293872; ENSP00000293872; ENSG00000007392. [Q9NQ29-1]
Ensembl; ENST00000337351; ENSP00000337507; ENSG00000007392. [Q9NQ29-2]
Ensembl; ENST00000397783; ENSP00000380885; ENSG00000007392. [Q9NQ29-2]
GeneID; 55692; -.
KEGG; hsa:55692; -.
UCSC; uc002cga.2; human. [Q9NQ29-1]
CTD; 55692; -.
DisGeNET; 55692; -.
EuPathDB; HostDB:ENSG00000007392.16; -.
GeneCards; LUC7L; -.
HGNC; HGNC:6723; LUC7L.
HPA; HPA056424; -.
HPA; HPA069321; -.
MIM; 607782; gene.
neXtProt; NX_Q9NQ29; -.
OpenTargets; ENSG00000007392; -.
PharmGKB; PA30485; -.
eggNOG; KOG0796; Eukaryota.
eggNOG; COG5200; LUCA.
GeneTree; ENSGT00730000110670; -.
HOGENOM; HOG000215956; -.
HOVERGEN; HBG062167; -.
InParanoid; Q9NQ29; -.
OMA; REESWER; -.
OrthoDB; EOG091G0PSO; -.
PhylomeDB; Q9NQ29; -.
TreeFam; TF317607; -.
ChiTaRS; LUC7L; human.
GeneWiki; LUC7L; -.
GenomeRNAi; 55692; -.
PRO; PR:Q9NQ29; -.
Proteomes; UP000005640; Chromosome 16.
Bgee; ENSG00000007392; -.
CleanEx; HS_LUC7L; -.
ExpressionAtlas; Q9NQ29; baseline and differential.
Genevisible; Q9NQ29; HS.
GO; GO:0005685; C:U1 snRNP; IBA:GO_Central.
GO; GO:0071004; C:U2-type prespliceosome; IBA:GO_Central.
GO; GO:0042802; F:identical protein binding; IPI:IntAct.
GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
GO; GO:0050733; F:RS domain binding; IEA:Ensembl.
GO; GO:0006376; P:mRNA splice site selection; IBA:GO_Central.
GO; GO:0045843; P:negative regulation of striated muscle tissue development; IEA:Ensembl.
InterPro; IPR004882; Luc7-rel.
PANTHER; PTHR12375; PTHR12375; 1.
Pfam; PF03194; LUC7; 1.
1: Evidence at protein level;
Alternative splicing; Coiled coil; Complete proteome; Phosphoprotein;
Reference proteome.
CHAIN 1 371 Putative RNA-binding protein Luc7-like 1.
/FTId=PRO_0000187280.
COILED 87 177 {ECO:0000255}.
COILED 218 259 {ECO:0000255}.
COMPBIAS 243 362 Arg/Ser-rich.
MOD_RES 332 332 Phosphoserine.
{ECO:0000244|PubMed:23186163}.
MOD_RES 336 336 Phosphoserine.
{ECO:0000244|PubMed:23186163}.
MOD_RES 363 363 Phosphoserine.
{ECO:0000244|PubMed:17081983,
ECO:0000244|PubMed:19690332,
ECO:0000244|PubMed:20068231,
ECO:0000244|PubMed:21406692,
ECO:0000244|PubMed:23186163}.
VAR_SEQ 1 20 MSAQAQMRALLDQLMGTARD -> MQM (in isoform
3). {ECO:0000303|PubMed:15489334}.
/FTId=VSP_010214.
VAR_SEQ 326 371 Missing (in isoform 2).
{ECO:0000303|PubMed:14702039,
ECO:0000303|PubMed:15489334}.
/FTId=VSP_010215.
CONFLICT 171 171 E -> V (in Ref. 3; AAK61218).
{ECO:0000305}.
SEQUENCE 371 AA; 43728 MW; C277F424F5F5659C CRC64;
MSAQAQMRAL LDQLMGTARD GDETRQRVKF TDDRVCKSHL LDCCPHDILA GTRMDLGECT
KIHDLALRAD YEIASKERDL FFELDAMDHL ESFIAECDRR TELAKKRLAE TQEEISAEVS
AKAEKVHELN EEIGKLLAKA EQLGAEGNVD ESQKILMEVE KVRAKKKEAE EEYRNSMPAS
SFQQQKLRVC EVCSAYLGLH DNDRRLADHF GGKLHLGFIQ IREKLDQLRK TVAEKQEKRN
QDRLRRREER EREERLSRRS GSRTRDRRRS RSRDRRRRRS RSTSRERRKL SRSRSRDRHR
RHRSRSRSHS RGHRRASRDR SAKYKFSRER ASREESWESG RSERGPPDWR LESSNGKMAS
RRSEEKEAGE I


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