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Putative cadmium/zinc-transporting ATPase HMA4 (EC 3.6.3.3) (EC 3.6.3.5) (Protein HEAVY METAL ATPASE 4) (Putative cadmium/zinc-transporting ATPase 2)

 HMA4_ARATH              Reviewed;        1172 AA.
O64474;
11-JAN-2001, integrated into UniProtKB/Swiss-Prot.
01-MAY-1999, sequence version 2.
23-MAY-2018, entry version 151.
RecName: Full=Putative cadmium/zinc-transporting ATPase HMA4;
EC=3.6.3.3;
EC=3.6.3.5;
AltName: Full=Protein HEAVY METAL ATPASE 4;
AltName: Full=Putative cadmium/zinc-transporting ATPase 2;
Name=HMA4; OrderedLocusNames=At2g19110; ORFNames=T20K24.12;
Arabidopsis thaliana (Mouse-ear cress).
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
Arabidopsis.
NCBI_TaxID=3702;
[1]
NUCLEOTIDE SEQUENCE [MRNA].
STRAIN=cv. Columbia; TISSUE=Root;
PubMed=12848823; DOI=10.1046/j.1365-313X.2003.01790.x;
Mills R.F., Krijger G.C., Baccarini P.J., Hall J.L., Williams L.E.;
"Functional expression of AtHMA4, a P1B-type ATPase of the Zn/Co/Cd/Pb
subclass.";
Plant J. 35:164-176(2003).
[2]
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=cv. Columbia;
PubMed=10617197; DOI=10.1038/45471;
Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L.,
Moffat K.S., Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L.,
Tallon L.J., Gill J.E., Adams M.D., Carrera A.J., Creasy T.H.,
Goodman H.M., Somerville C.R., Copenhaver G.P., Preuss D.,
Nierman W.C., White O., Eisen J.A., Salzberg S.L., Fraser C.M.,
Venter J.C.;
"Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana.";
Nature 402:761-768(1999).
[3]
GENOME REANNOTATION.
STRAIN=cv. Columbia;
PubMed=27862469; DOI=10.1111/tpj.13415;
Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
Town C.D.;
"Araport11: a complete reannotation of the Arabidopsis thaliana
reference genome.";
Plant J. 89:789-804(2017).
[4]
NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
STRAIN=cv. Columbia;
PubMed=14593172; DOI=10.1126/science.1088305;
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J.,
Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F.,
Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.,
Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J.,
Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y.,
Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P.,
Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F.,
Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M.,
Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J.,
Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T.,
Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y.,
Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.;
"Empirical analysis of transcriptional activity in the Arabidopsis
genome.";
Science 302:842-846(2003).
-!- FUNCTION: Involved in cadmium/zinc transport. {ECO:0000305}.
-!- CATALYTIC ACTIVITY: ATP + H(2)O + Cd(2+)(In) = ADP + phosphate +
Cd(2+)(Out).
-!- CATALYTIC ACTIVITY: ATP + H(2)O + Zn(2+)(In) = ADP + phosphate +
Zn(2+)(Out).
-!- SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein.
-!- SIMILARITY: Belongs to the cation transport ATPase (P-type) (TC
3.A.3) family. Type IB subfamily. {ECO:0000305}.
-----------------------------------------------------------------------
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EMBL; AJ297264; CAC19544.1; -; mRNA.
EMBL; AC002392; AAD12041.1; -; Genomic_DNA.
EMBL; CP002685; AEC06848.1; -; Genomic_DNA.
EMBL; CP002685; ANM62252.1; -; Genomic_DNA.
EMBL; CP002685; ANM62253.1; -; Genomic_DNA.
EMBL; AY096796; AAM19954.1; -; mRNA.
PIR; F84572; F84572.
RefSeq; NP_001318247.1; NM_001335621.1.
RefSeq; NP_001324425.1; NM_001335622.1.
RefSeq; NP_179501.1; NM_127468.5.
UniGene; At.25023; -.
PDB; 2KKH; NMR; -; A=2-96.
PDBsum; 2KKH; -.
ProteinModelPortal; O64474; -.
SMR; O64474; -.
BioGrid; 1785; 1.
IntAct; O64474; 1.
STRING; 3702.AT2G19110.1; -.
TCDB; 3.A.3.6.18; the p-type atpase (p-atpase) superfamily.
PaxDb; O64474; -.
PRIDE; O64474; -.
EnsemblPlants; AT2G19110.1; AT2G19110.1; AT2G19110.
EnsemblPlants; AT2G19110.2; AT2G19110.2; AT2G19110.
EnsemblPlants; AT2G19110.3; AT2G19110.3; AT2G19110.
GeneID; 816428; -.
Gramene; AT2G19110.1; AT2G19110.1; AT2G19110.
Gramene; AT2G19110.2; AT2G19110.2; AT2G19110.
Gramene; AT2G19110.3; AT2G19110.3; AT2G19110.
KEGG; ath:AT2G19110; -.
Araport; AT2G19110; -.
TAIR; locus:2059083; AT2G19110.
eggNOG; KOG0207; Eukaryota.
eggNOG; COG2217; LUCA.
HOGENOM; HOG000250399; -.
InParanoid; O64474; -.
KO; K01534; -.
OMA; HENAGLE; -.
OrthoDB; EOG09360170; -.
PhylomeDB; O64474; -.
BioCyc; ARA:AT2G19110-MONOMER; -.
EvolutionaryTrace; O64474; -.
PRO; PR:O64474; -.
Proteomes; UP000006548; Chromosome 2.
ExpressionAtlas; O64474; baseline and differential.
Genevisible; O64474; AT.
GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
GO; GO:0005886; C:plasma membrane; IDA:TAIR.
GO; GO:0009506; C:plasmodesma; IDA:TAIR.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0008551; F:cadmium-exporting ATPase activity; IEA:UniProtKB-EC.
GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
GO; GO:0016463; F:zinc-exporting ATPase activity; IEA:UniProtKB-EC.
GO; GO:0015691; P:cadmium ion transport; IMP:TAIR.
GO; GO:0030001; P:metal ion transport; IMP:TAIR.
GO; GO:0046686; P:response to cadmium ion; IMP:TAIR.
GO; GO:0032025; P:response to cobalt ion; IMP:TAIR.
GO; GO:0010038; P:response to metal ion; IMP:TAIR.
GO; GO:0010043; P:response to zinc ion; IMP:TAIR.
GO; GO:0055069; P:zinc ion homeostasis; IGI:TAIR.
GO; GO:0006829; P:zinc ion transport; IMP:TAIR.
Gene3D; 3.40.1110.10; -; 1.
Gene3D; 3.40.50.1000; -; 2.
InterPro; IPR023299; ATPase_P-typ_cyto_dom_N.
InterPro; IPR018303; ATPase_P-typ_P_site.
InterPro; IPR023298; ATPase_P-typ_TM_dom_sf.
InterPro; IPR008250; ATPase_P-typ_transduc_dom_A_sf.
InterPro; IPR036412; HAD-like_sf.
InterPro; IPR023214; HAD_sf.
InterPro; IPR006121; HMA_dom.
InterPro; IPR036163; HMA_dom_sf.
InterPro; IPR027256; P-typ_ATPase_IB.
InterPro; IPR001757; P_typ_ATPase.
SUPFAM; SSF55008; SSF55008; 1.
SUPFAM; SSF56784; SSF56784; 2.
SUPFAM; SSF81653; SSF81653; 1.
SUPFAM; SSF81665; SSF81665; 3.
TIGRFAMs; TIGR01525; ATPase-IB_hvy; 1.
TIGRFAMs; TIGR01494; ATPase_P-type; 1.
PROSITE; PS00154; ATPASE_E1_E2; 1.
PROSITE; PS50846; HMA_2; 1.
1: Evidence at protein level;
3D-structure; ATP-binding; Cadmium; Complete proteome; Hydrolase;
Magnesium; Membrane; Metal-binding; Nucleotide-binding;
Reference proteome; Transmembrane; Transmembrane helix; Zinc.
CHAIN 1 1172 Putative cadmium/zinc-transporting ATPase
HMA4.
/FTId=PRO_0000046399.
TOPO_DOM 1 93 Cytoplasmic. {ECO:0000255}.
TRANSMEM 94 115 Helical. {ECO:0000255}.
TOPO_DOM 116 118 Extracellular. {ECO:0000255}.
TRANSMEM 119 138 Helical. {ECO:0000255}.
TOPO_DOM 139 145 Cytoplasmic. {ECO:0000255}.
TRANSMEM 146 166 Helical. {ECO:0000255}.
TOPO_DOM 167 167 Extracellular. {ECO:0000255}.
TRANSMEM 168 188 Helical. {ECO:0000255}.
TOPO_DOM 189 314 Cytoplasmic. {ECO:0000255}.
TRANSMEM 315 337 Helical. {ECO:0000255}.
TOPO_DOM 338 345 Extracellular. {ECO:0000255}.
TRANSMEM 346 363 Helical. {ECO:0000255}.
TOPO_DOM 364 656 Cytoplasmic. {ECO:0000255}.
TRANSMEM 657 676 Helical. {ECO:0000255}.
TOPO_DOM 677 680 Extracellular. {ECO:0000255}.
TRANSMEM 681 700 Helical. {ECO:0000255}.
TOPO_DOM 701 1172 Cytoplasmic. {ECO:0000255}.
DOMAIN 18 84 HMA. {ECO:0000255|PROSITE-
ProRule:PRU00280}.
COMPBIAS 1157 1169 Poly-His.
ACT_SITE 401 401 4-aspartylphosphate intermediate.
{ECO:0000250}.
METAL 601 601 Magnesium. {ECO:0000255|PROSITE-
ProRule:PRU00280}.
METAL 605 605 Magnesium. {ECO:0000255|PROSITE-
ProRule:PRU00280}.
HELIX 6 8 {ECO:0000244|PDB:2KKH}.
STRAND 16 23 {ECO:0000244|PDB:2KKH}.
TURN 28 31 {ECO:0000244|PDB:2KKH}.
HELIX 32 41 {ECO:0000244|PDB:2KKH}.
STRAND 42 51 {ECO:0000244|PDB:2KKH}.
TURN 52 55 {ECO:0000244|PDB:2KKH}.
STRAND 56 61 {ECO:0000244|PDB:2KKH}.
TURN 63 65 {ECO:0000244|PDB:2KKH}.
HELIX 68 78 {ECO:0000244|PDB:2KKH}.
STRAND 82 85 {ECO:0000244|PDB:2KKH}.
SEQUENCE 1172 AA; 127209 MW; 1E913B9450443440 CRC64;
MALQNKEEEK KKVKKLQKSY FDVLGICCTS EVPIIENILK SLDGVKEYSV IVPSRTVIVV
HDSLLISPFQ IAKALNEARL EANVRVNGET SFKNKWPSPF AVVSGLLLLL SFLKFVYSPL
RWLAVAAVAA GIYPILAKAF ASIKRPRIDI NILVIITVIA TLAMQDFMEA AAVVFLFTIS
DWLETRASYK ATSVMQSLMS LAPQKAIIAE TGEEVEVDEV KVDTVVAVKA GETIPIDGIV
VDGNCEVDEK TLTGEAFPVP KQRDSTVWAG TINLNGYICV KTTSLAGDCV VAKMAKLVEE
AQSSKTKSQR LIDKCSQYYT PAIILVSACV AIVPVIMKVH NLKHWFHLAL VVLVSGCPCG
LILSTPVATF CALTKAATSG LLIKSADYLD TLSKIKIVAF DKTGTITRGE FIVIDFKSLS
RDINLRSLLY WVSSVESKSS HPMAATIVDY AKSVSVEPRP EEVEDYQNFP GEGIYGKIDG
NDIFIGNKKI ASRAGCSTVP EIEVDTKGGK TVGYVYVGER LAGFFNLSDA CRSGVSQAMA
ELKSLGIKTA MLTGDNQAAA MHAQEQLGNV LDVVHGDLLP EDKSRIIQEF KKEGPTAMVG
DGVNDAPALA TADIGISMGI SGSALATQTG NIILMSNDIR RIPQAVKLAR RARRKVVENV
CLSIILKAGI LALAFAGHPL IWAAVLVDVG TCLLVIFNSM LLLREKKKIG NKKCYRASTS
KLNGRKLEGD DDYVVDLEAG LLTKSGNGQC KSSCCGDKKN QENVVMMKPS SKTSSDHSHP
GCCGDKKEEK VKPLVKDGCC SEKTRKSEGD MVSLSSCKKS SHVKHDLKMK GGSGCCASKN
EKGKEVVAKS CCEKPKQQVE SVGDCKSGHC EKKKQAEDIV VPVQIIGHAL THVEIELQTK
ETCKTSCCDS KEKVKETGLL LSSENTPYLE KGVLIKDEGN CKSGSENMGT VKQSCHEKGC
SDEKQTGEIT LASEEETDDQ DCSSGCCVNE GTVKQSFDEK KHSVLVEKEG LDMETGFCCD
AKLVCCGNTE GEVKEQCRLE IKKEEHCKSG CCGEEIQTGE ITLVSEEETE STNCSTGCCV
DKEEVTQTCH EKPASLVVSG LEVKKDEHCE SSHRAVKVET CCKVKIPEAC ASKCRDRAKR
HSGKSCCRSY AKELCSHRHH HHHHHHHHHV SA


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