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Pyridoxine/pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx) (Pyridoxal 5'-phosphate synthase)

 F4ASG2_GLAS4            Unreviewed;       213 AA.
F4ASG2;
28-JUN-2011, integrated into UniProtKB/TrEMBL.
28-JUN-2011, sequence version 1.
25-OCT-2017, entry version 50.
RecName: Full=Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629};
EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};
AltName: Full=PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629};
Short=PNPOx {ECO:0000256|HAMAP-Rule:MF_01629};
AltName: Full=Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629};
Name=pdxH {ECO:0000256|HAMAP-Rule:MF_01629};
OrderedLocusNames=Glaag_1185 {ECO:0000313|EMBL:AEE22146.1};
Glaciecola sp. (strain 4H-3-7+YE-5).
Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
Alteromonadaceae; Glaciecola.
NCBI_TaxID=983545 {ECO:0000313|EMBL:AEE22146.1, ECO:0000313|Proteomes:UP000006544};
[1] {ECO:0000313|EMBL:AEE22146.1, ECO:0000313|Proteomes:UP000006544}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=4H-3-7+YE-5 {ECO:0000313|EMBL:AEE22146.1,
ECO:0000313|Proteomes:UP000006544};
PubMed=21705587; DOI=10.1128/JB.05468-11;
US DOE Joint Genome Institute;
Klippel B., Lochner A., Bruce D.C., Davenport K.W., Detter C.,
Goodwin L.A., Han J., Han S., Land M.L., Mikhailova N., Nolan M.,
Pennacchio L., Pitluck S., Tapia R., Woyke T., Wiebusch S., Basner A.,
Abe F., Horikoshi K., Keller M., Antranikian G.;
"Complete genome sequence of the marine, cellulose and xylan degrading
bacterium Glaciecola sp. 4H-3-7+YE-5.";
J. Bacteriol. 193:4547-4548(2011).
[2]
NUCLEOTIDE SEQUENCE.
STRAIN=4H-3-7+YE-5;
US DOE Joint Genome Institute;
Lucas S., Copeland A., Lapidus A., Cheng J.-F., Goodwin L.,
Pitluck S., Davenport K., Detter J.C., Han C., Tapia R., Land M.,
Hauser L., Kyrpides N., Ivanova N., Mikhailova N., Pagani I.,
Piela B., Lochner A., Antranikian F.I., Woyke T.;
"Complete sequence of chromosome of Glaciecola sp. 4H-3-7+YE-5.";
Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Catalyzes the oxidation of either pyridoxine 5'-
phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal
5'-phosphate (PLP). {ECO:0000256|HAMAP-Rule:MF_01629,
ECO:0000256|SAAS:SAAS00025342}.
-!- CATALYTIC ACTIVITY: Pyridoxamine 5'-phosphate + H(2)O + O(2) =
pyridoxal 5'-phosphate + NH(3) + H(2)O(2). {ECO:0000256|HAMAP-
Rule:MF_01629, ECO:0000256|SAAS:SAAS00025373}.
-!- CATALYTIC ACTIVITY: Pyridoxine 5'-phosphate + O(2) = pyridoxal 5'-
phosphate + H(2)O(2). {ECO:0000256|HAMAP-Rule:MF_01629,
ECO:0000256|SAAS:SAAS00025349}.
-!- COFACTOR:
Name=FMN; Xref=ChEBI:CHEBI:58210;
Evidence={ECO:0000256|HAMAP-Rule:MF_01629,
ECO:0000256|PIRSR:PIRSR000190-2};
Note=Binds 1 FMN per subunit. {ECO:0000256|HAMAP-Rule:MF_01629,
ECO:0000256|PIRSR:PIRSR000190-2};
-!- PATHWAY: Cofactor metabolism; pyridoxal 5'-phosphate salvage;
pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate: step 1/1.
{ECO:0000256|HAMAP-Rule:MF_01629, ECO:0000256|SAAS:SAAS00531211}.
-!- PATHWAY: Cofactor metabolism; pyridoxal 5'-phosphate salvage;
pyridoxal 5'-phosphate from pyridoxine 5'-phosphate: step 1/1.
{ECO:0000256|HAMAP-Rule:MF_01629, ECO:0000256|SAAS:SAAS00531213}.
-!- SUBUNIT: Homodimer. {ECO:0000256|HAMAP-Rule:MF_01629,
ECO:0000256|SAAS:SAAS00899181}.
-!- SIMILARITY: Belongs to the pyridoxamine 5'-phosphate oxidase
family. {ECO:0000256|HAMAP-Rule:MF_01629,
ECO:0000256|SAAS:SAAS00899054}.
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EMBL; CP002526; AEE22146.1; -; Genomic_DNA.
RefSeq; WP_013753187.1; NC_015497.1.
STRING; 983545.Glaag_1185; -.
EnsemblBacteria; AEE22146; AEE22146; Glaag_1185.
KEGG; gag:Glaag_1185; -.
eggNOG; ENOG4108S7T; Bacteria.
eggNOG; COG0259; LUCA.
KO; K00275; -.
OrthoDB; POG091H054N; -.
UniPathway; UPA01068; UER00304.
UniPathway; UPA01068; UER00305.
Proteomes; UP000006544; Chromosome.
GO; GO:0010181; F:FMN binding; IEA:UniProtKB-UniRule.
GO; GO:0004733; F:pyridoxamine-phosphate oxidase activity; IEA:UniProtKB-UniRule.
GO; GO:0008615; P:pyridoxine biosynthetic process; IEA:UniProtKB-KW.
Gene3D; 2.30.110.10; -; 1.
HAMAP; MF_01629; PdxH; 1.
InterPro; IPR000659; Pyridox_Oxase.
InterPro; IPR019740; Pyridox_Oxase_CS.
InterPro; IPR011576; Pyridox_Oxase_put.
InterPro; IPR019576; Pyridoxamine_oxidase_dimer_C.
InterPro; IPR012349; Split_barrel_FMN-bd.
PANTHER; PTHR10851:SF0; PTHR10851:SF0; 1.
Pfam; PF10590; PNP_phzG_C; 1.
Pfam; PF01243; Putative_PNPOx; 1.
PIRSF; PIRSF000190; Pyd_amn-ph_oxd; 1.
SUPFAM; SSF50475; SSF50475; 1.
TIGRFAMs; TIGR00558; pdxH; 1.
PROSITE; PS01064; PYRIDOX_OXIDASE; 1.
3: Inferred from homology;
Complete proteome {ECO:0000313|Proteomes:UP000006544};
Flavoprotein {ECO:0000256|HAMAP-Rule:MF_01629,
ECO:0000256|PIRSR:PIRSR000190-2, ECO:0000256|SAAS:SAAS00899185};
FMN {ECO:0000256|HAMAP-Rule:MF_01629, ECO:0000256|PIRSR:PIRSR000190-2,
ECO:0000256|SAAS:SAAS00899185};
Oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01629,
ECO:0000256|SAAS:SAAS00899182, ECO:0000313|EMBL:AEE22146.1};
Pyridoxine biosynthesis {ECO:0000256|HAMAP-Rule:MF_01629,
ECO:0000256|SAAS:SAAS00025314}.
DOMAIN 35 119 Putative_PNPOx.
{ECO:0000259|Pfam:PF01243}.
DOMAIN 172 213 PNP_phzG_C. {ECO:0000259|Pfam:PF10590}.
NP_BIND 61 66 FMN. {ECO:0000256|HAMAP-Rule:MF_01629,
ECO:0000256|PIRSR:PIRSR000190-2}.
NP_BIND 76 77 FMN. {ECO:0000256|HAMAP-Rule:MF_01629,
ECO:0000256|PIRSR:PIRSR000190-2}.
NP_BIND 140 141 FMN. {ECO:0000256|HAMAP-Rule:MF_01629,
ECO:0000256|PIRSR:PIRSR000190-2}.
REGION 8 11 Substrate binding.
{ECO:0000256|PIRSR:PIRSR000190-1}.
REGION 191 193 Substrate binding. {ECO:0000256|HAMAP-
Rule:MF_01629,
ECO:0000256|PIRSR:PIRSR000190-1}.
BINDING 66 66 Substrate. {ECO:0000256|HAMAP-
Rule:MF_01629,
ECO:0000256|PIRSR:PIRSR000190-1}.
BINDING 82 82 FMN. {ECO:0000256|HAMAP-Rule:MF_01629,
ECO:0000256|PIRSR:PIRSR000190-2}.
BINDING 83 83 FMN. {ECO:0000256|HAMAP-Rule:MF_01629,
ECO:0000256|PIRSR:PIRSR000190-2}.
BINDING 105 105 FMN. {ECO:0000256|HAMAP-Rule:MF_01629,
ECO:0000256|PIRSR:PIRSR000190-2}.
BINDING 123 123 Substrate. {ECO:0000256|HAMAP-
Rule:MF_01629,
ECO:0000256|PIRSR:PIRSR000190-1}.
BINDING 127 127 Substrate. {ECO:0000256|HAMAP-
Rule:MF_01629,
ECO:0000256|PIRSR:PIRSR000190-1}.
BINDING 131 131 Substrate. {ECO:0000256|HAMAP-
Rule:MF_01629,
ECO:0000256|PIRSR:PIRSR000190-1}.
BINDING 185 185 FMN. {ECO:0000256|HAMAP-Rule:MF_01629,
ECO:0000256|PIRSR:PIRSR000190-2}.
BINDING 195 195 FMN. {ECO:0000256|HAMAP-Rule:MF_01629,
ECO:0000256|PIRSR:PIRSR000190-2}.
SEQUENCE 213 AA; 24213 MW; 72908F3E884BDDD5 CRC64;
MQPLSQIRRE YSQGHLTEES LLSDPYSQFN QWMGDAVEAG LPDPTAMTVA SVDGQGQPSQ
RIVLLKDVID GGFVFYTNLG SRKAQDLMSN SKVSLHFPWH ILERQVHVRG TASLVARDEV
QKYFSSRPIS SQLAAWTSKQ SQPIDSREAL LARFEETKNT FSNKDIPAPE FWGGFKVAPQ
EIEFWQGGDH RLHDRFVFSR ENSADWSVQR LMP


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