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RNA-directed RNA polymerase L (Protein L) (Large structural protein) (Replicase) (Transcriptase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-); GDP polyribonucleotidyltransferase (EC 2.7.7.88)]

 Q4KRW1_HRSV             Unreviewed;      2165 AA.
Q4KRW1;
02-AUG-2005, integrated into UniProtKB/TrEMBL.
02-AUG-2005, sequence version 1.
30-AUG-2017, entry version 81.
RecName: Full=RNA-directed RNA polymerase L {ECO:0000256|PIRNR:PIRNR000830};
Short=Protein L {ECO:0000256|PIRNR:PIRNR000830};
AltName: Full=Large structural protein {ECO:0000256|PIRNR:PIRNR000830};
AltName: Full=Replicase {ECO:0000256|PIRNR:PIRNR000830};
AltName: Full=Transcriptase {ECO:0000256|PIRNR:PIRNR000830};
Includes:
RecName: Full=RNA-directed RNA polymerase {ECO:0000256|PIRNR:PIRNR000830};
EC=2.7.7.48 {ECO:0000256|PIRNR:PIRNR000830};
Includes:
RecName: Full=mRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|PIRNR:PIRNR000830};
EC=2.1.1.56 {ECO:0000256|PIRNR:PIRNR000830};
Includes:
RecName: Full=mRNA guanylyltransferase {ECO:0000256|PIRNR:PIRNR000830};
EC=2.7.7.- {ECO:0000256|PIRNR:PIRNR000830};
Includes:
RecName: Full=GDP polyribonucleotidyltransferase {ECO:0000256|PIRNR:PIRNR000830};
EC=2.7.7.88 {ECO:0000256|PIRNR:PIRNR000830};
Name=L {ECO:0000313|EMBL:AAX23996.1};
Human respiratory syncytial virus.
Viruses; ssRNA viruses; ssRNA negative-strand viruses;
Mononegavirales; Pneumoviridae; Orthopneumovirus.
NCBI_TaxID=11250 {ECO:0000313|EMBL:AAX23996.1, ECO:0000313|Proteomes:UP000158141};
NCBI_TaxID=9606; Homo sapiens (Human).
[1] {ECO:0000313|EMBL:AAX23996.1, ECO:0000313|Proteomes:UP000158141}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=ATCC VR-26 {ECO:0000313|EMBL:AAX23996.1};
PubMed=15994826; DOI=10.1128/JVI.79.14.9315-9319.2005;
Lo M.S., Brazas R.M., Holtzman M.J.;
"Respiratory syncytial virus nonstructural proteins NS1 and NS2
mediate inhibition of Stat2 expression and alpha/beta interferon
responsiveness.";
J. Virol. 79:9315-9319(2005).
[2] {ECO:0000313|Proteomes:UP000119304, ECO:0000313|Proteomes:UP000130886, ECO:0000313|Proteomes:UP000163705}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Long {ECO:0000313|EMBL:AHC94766.1},
Luc_recombinant_long {ECO:0000313|EMBL:AHC94778.1}, and
MCh_recombinant_long {ECO:0000313|EMBL:AHC94790.1};
Rameix-Welti M.-A., Sourimant J., Yu Q., Ribeiro C., Galloux M.,
Fix J., Gault E., Eleouet J.-F.;
"Rescue of respiratory syncytial virus expressing mCherry and firefly
luciferase : new tools for antiviral drug discovery.";
Submitted (SEP-2013) to the EMBL/GenBank/DDBJ databases.
[3] {ECO:0000313|EMBL:AMQ35404.1, ECO:0000313|Proteomes:UP000103294}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Long recombinant {ECO:0000313|EMBL:AMQ35404.1};
Wen L., He K., Yang H.;
Submitted (FEB-2016) to the EMBL/GenBank/DDBJ databases.
[4] {ECO:0000313|EMBL:AMQ35404.1, ECO:0000313|Proteomes:UP000103294}
NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
STRAIN=Long recombinant {ECO:0000313|EMBL:AMQ35404.1};
Zhivaki D., Lemoine S., Lim A., Morva A., Vidalain P.-O.,
Schandene L., Casartelli N., Rameix - Welti M.A.--A., Deriaud E.,
Beitz B., Ripaux - Lefevre M., Miatello J., Lemercier B., Descamps D.,
Eleouet J.F.--F., Riffault S., Schwartz O., Porcheray F., Mascart F.,
Zhang X., Tissieres P., Lo - Man R.;
"Neonatal regulatory B cells are infected by human respiratory
syncytial virus and are predictive ofacute bronchiolitis severity.";
Submitted (MAR-2016) to the EMBL/GenBank/DDBJ databases.
[5] {ECO:0000313|EMBL:API65192.1}
NUCLEOTIDE SEQUENCE.
Rincheval V., Lelek M., Bouillier C., Sitterlin D., Blouquit S.,
Galloux M., Eleouet J.-F., Zimmer C., Gault E., Rameix-Welti M.-A.;
"M2-1 protein of respiratory syncytial virus concentrates with mRNA in
viral mRNA granules inside inclusion bodies.";
Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
-!- FUNCTION: Displays RNA-directed RNA polymerase, mRNA guanylyl
transferase, mRNA (guanine-N(7)-)-methyltransferase and poly(A)
synthetase activities. The viral mRNA guanylyl transferase
displays a different biochemical reaction than the cellular
enzyme. The template is composed of the viral RNA tightly
encapsidated by the nucleoprotein (N). Functions either as
transcriptase or as replicase. The transcriptase synthesizes
subsequently the subgenomic RNAs, assuring their capping and
polyadenylation by a stuttering mechanism. The replicase mode is
dependent on intracellular protein N concentration. In this mode,
the polymerase replicates the whole viral genome without
recognizing the transcriptional signals.
{ECO:0000256|PIRNR:PIRNR000830}.
-!- CATALYTIC ACTIVITY: 5'-triphospho-mRNA + GDP = diphosphate +
guanosine 5'-triphospho-mRNA. {ECO:0000256|PIRNR:PIRNR000830}.
-!- CATALYTIC ACTIVITY: Nucleoside triphosphate + RNA(n) = diphosphate
+ RNA(n+1). {ECO:0000256|PIRNR:PIRNR000830,
ECO:0000256|SAAS:SAAS00361115}.
-!- CATALYTIC ACTIVITY: S-adenosyl-L-methionine + G(5')pppR-RNA = S-
adenosyl-L-homocysteine + m(7)G(5')pppR-RNA.
{ECO:0000256|PIRNR:PIRNR000830, ECO:0000256|SAAS:SAAS00847042}.
-!- SUBCELLULAR LOCATION: Host cytoplasm
{ECO:0000256|SAAS:SAAS00847043}.
-!- SUBCELLULAR LOCATION: Virion {ECO:0000256|PIRNR:PIRNR000830}. Host
cytoplasm {ECO:0000256|PIRNR:PIRNR000830}.
-!- SIMILARITY: Belongs to the paramyxovirus L protein family.
{ECO:0000256|PIRNR:PIRNR000830}.
-----------------------------------------------------------------------
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EMBL; AY911262; AAX23996.1; -; Genomic_RNA.
EMBL; KF713490; AHC94766.1; -; Viral_cRNA.
EMBL; KF713491; AHC94778.1; -; Viral_cRNA.
EMBL; KF713492; AHC94790.1; -; Viral_cRNA.
EMBL; KU707921; AMQ35404.1; -; Genomic_RNA.
EMBL; KX348546; API65192.1; -; Genomic_RNA.
Proteomes; UP000103294; Genome.
Proteomes; UP000119304; Genome.
Proteomes; UP000130886; Genome.
Proteomes; UP000158141; Genome.
Proteomes; UP000163705; Genome.
GO; GO:0030430; C:host cell cytoplasm; IEA:UniProtKB-SubCell.
GO; GO:0019012; C:virion; IEA:UniProtKB-SubCell.
GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
GO; GO:0004482; F:mRNA (guanine-N7-)-methyltransferase activity; IEA:UniProtKB-EC.
GO; GO:0003968; F:RNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
InterPro; IPR026890; Mononeg_mRNAcap.
InterPro; IPR014023; Mononeg_RNA_pol_cat.
InterPro; IPR025786; Mononega_L_MeTrfase.
InterPro; IPR016269; RNA-dir_pol_paramyxovirus.
Pfam; PF14318; Mononeg_mRNAcap; 1.
Pfam; PF00946; Mononeg_RNA_pol; 1.
PIRSF; PIRSF000830; RNA_pol_ParamyxoV; 3.
TIGRFAMs; TIGR04198; paramyx_RNAcap; 1.
PROSITE; PS50526; RDRP_SSRNA_NEG_NONSEG; 1.
PROSITE; PS51590; SAM_MT_MNV_L; 1.
3: Inferred from homology;
ATP-binding {ECO:0000256|PIRNR:PIRNR000830,
ECO:0000256|SAAS:SAAS00503432};
Complete proteome {ECO:0000313|Proteomes:UP000103294,
ECO:0000313|Proteomes:UP000119304, ECO:0000313|Proteomes:UP000130886,
ECO:0000313|Proteomes:UP000158141};
Host cytoplasm {ECO:0000256|PIRNR:PIRNR000830,
ECO:0000256|SAAS:SAAS00847045};
Methyltransferase {ECO:0000256|PIRNR:PIRNR000830,
ECO:0000256|SAAS:SAAS00847038};
mRNA capping {ECO:0000256|PIRNR:PIRNR000830,
ECO:0000256|SAAS:SAAS00503423};
mRNA processing {ECO:0000256|PIRNR:PIRNR000830,
ECO:0000256|SAAS:SAAS00503423};
Multifunctional enzyme {ECO:0000256|SAAS:SAAS00503427};
Nucleotide-binding {ECO:0000256|PIRNR:PIRNR000830,
ECO:0000256|SAAS:SAAS00503432};
Nucleotidyltransferase {ECO:0000256|PIRNR:PIRNR000830,
ECO:0000256|SAAS:SAAS00503441, ECO:0000313|EMBL:AMQ35404.1};
RNA-directed RNA polymerase {ECO:0000256|PIRNR:PIRNR000830,
ECO:0000256|SAAS:SAAS00503441, ECO:0000313|EMBL:AMQ35404.1};
S-adenosyl-L-methionine {ECO:0000256|PIRNR:PIRNR000830,
ECO:0000256|SAAS:SAAS00503438};
Transferase {ECO:0000256|PIRNR:PIRNR000830,
ECO:0000256|SAAS:SAAS00503441, ECO:0000256|SAAS:SAAS00847038,
ECO:0000313|EMBL:AMQ35404.1};
Viral RNA replication {ECO:0000256|PIRNR:PIRNR000830,
ECO:0000256|SAAS:SAAS00503417};
Virion {ECO:0000256|PIRNR:PIRNR000830, ECO:0000256|SAAS:SAAS00847034}.
DOMAIN 693 877 RdRp catalytic.
{ECO:0000259|PROSITE:PS50526}.
DOMAIN 1820 2008 Mononegavirus-type SAM-dependent 2'-O-
MTase. {ECO:0000259|PROSITE:PS51590}.
SEQUENCE 2165 AA; 250415 MW; F085876F9C9CED3A CRC64;
MDPIINGNSA NVYLTDSYLK GVISFSECNA LGSYIFNGPY LKNDYTNLIS RQNPLIEHMN
LKKLNITQSL ISKYHKGEIK LEEPTYFQSL LMTYKSMTSL EQIATTNLLK KIIRRAIEIS
DVKVYAILNK LGLKEKDKIK SNNGQDEDNS VITTIIKDDI LSAVKDNQSH LKADKNHSTK
QKDTIKTTLL KKLMCSMQHP PSWLIHWFNL YTKLNNILTQ YRSNEVKNHG FILIDNQTLS
GFQFILNQYG CIVYHKELKR ITVTTYNQFL TWKDISLSRL NVCLITWISN CLNTLNKSLG
LRCGFNNVIL TQLFLYGDCI LKLFHNEGFY IIKEVEGFIM SLILNITEED QFRKRFYNSM
LNNITDAANK AQKNLLSRVC HTLLDKTVSD NIINGRWIIL LSKFLKLIKL AGDNNLNNLS
ELYFLFRIFG HPMVDERQAM DAVKVNCNET KFYLLSSLSM LRGAFIYRII KGFVNNYNRW
PTLRNAIVLP LRWLTYYKLN TYPSLLELTE RDLIVLSGLR FYREFRLPKK VDLEMIINDK
AISPPKNLIW TSFPRNYMPS HIQNYIEHEK LKFSESDKSR RVLEYYLRDN KFNECDLYNC
VVNQSYLNNP NHVVSLTGKE RELSVGRMFA MQPGMFRQVQ ILAEKMIAEN ILQFFPESLT
RYGDLELQKI LELKAGISNK SNRYNDNYNN YISKCSIITD LSKFNQAFRY ETSCICSDVL
DELHGVQSLF SWLHLTIPHV TIICTYRHAP PYIRDHIVDL NNVDEQSGLY RYHMGGIEGW
CQKLWTIEAI SLLDLISLKG KFSITALING DNQSIDISKP VRLMEGQTHA QADYLLALNS
LKLLYKEYAG IGHKLKGTET YISRDMQFMS KTIQHNGVYY PASIKKVLRV GPWINTILDD
FKVSLESIGS LTQELEYRGE SLLCSLIFRN VWLYNQIALQ LKNHALCNNK LYLDILKVLK
HLKTFFNLDN IDTALTLYMN LPMLFGGGDP NLLYRSFYRR TPDFLTEAIV HSVFILSYYT
NHDLKDKLQD LSDDRLNKFL TCIITFDKNP NAEFVTLMRD PQALGSERQA KITSEINRLA
VTEVLSTAPN KIFSKSAQHY TTTEIDLNDI MQNIEPTYPH GLRVVYESLP FYKAEKIVNL
ISGTKSITNI LEKTSAIDLT DIDRATEMMR KNITLLIRIL PLDCNRDKRE ILSMENLSIT
ELSKYVRERS WSLSNIVGVT SPSIMYTMDI KYTTSTIASG IIIEKYNVNS LTRGERGPTK
PWVGSSTQEK KTMPVYNRQV LTKKQRDQID LLAKLDWVYA SIDNKDEFME ELSIGTLGLT
YEKAKKLFPQ YLSVNYLHRL TVSSRPCEFP ASIPAYRTTN YHFDTSPINR ILTEKYGDED
IDIVFQNCIS FGLSLMSVVE QFTNVCPNRI ILIPKLNEIH LMKPPIFTGD VDIHKLKQVI
QKQHMFLPDK ISLTQYVELF LSNKTLKSGS HVNSNLILAH KISDYFHNTY ILSTNLAGHW
ILIIQLMKDS KGIFEKDWGE GYITDHMFIN LKVFFNAYKT YLLCFHKGYG KAKLECDMNT
SDLLCVLELI DSSYWKSMSK VFLEQKVIKY ILSQDASLHR VKGCHSFKLW FLKRLNVAEF
TVCPWVVNID YHPTHMKAIL TYIDLVRMGL INIDRIHIKN KHKFNDEFYT SNLFYINYNF
SDNTHLLTKH IRIANSELEN NYNKLYHPTP ETLENILANP IKSNDKKTLN DYCIGKNVDS
IMLPLLSNKK LVKSSAMIRT NYSKQDLYNL FPTVVIDRII DHSGNTAKSN QLYTTTSHQI
SLVHNSTSLY CMLPWHHINR FNFVFSSTGC KISIEYILKD LKIKDPNCIA FIGEGAGNLL
LRTVVELHPD IRYIYRSLKD CNDHSLPIEF LRLYNGHINI DYGENLTIPA TDATNNIHWS
YLHIKFAEPI SLFVCDAELP VTVNWSKIII EWSKHVRKCK YCSSVNKCTL IVKYHAQDDI
DFKLDNITIL KTYVCLGSKL KGSEVYLVLT IGPANIFPVF NVVQNAKLIL SRTKNFIMPK
KADKESIDAN IKSLIPFLCY PITKKGINTA LSKLKSVVSG DILSYSIAGR NEVFSNKLIN
HKHMNILKWF NHVLNFRSTE LNYNHLYMVE STYPYLSELL NSLTTNELKK LIKITGSLLY
NFHNE


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